Nucleotide Global Alignment

Description

Query:
TRCN0000468244
Subject:
XR_001740396.1
Aligned Length:
4567
Identities:
1559
Gaps:
2995

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCTACTTTGCTGCCCTTTGGTCGCCATGCTTAGTGTGGCTACTGCCTCTGTGCTACTTGAGGCTCTCCTACGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTTTCGATGCCTTCGATGAACCTCTACCTAAGCACTTCTTCCCTTTCACCGCGAACTCCTACCTTCTCGGGTT  148

Query    1  -----------------ATGTCCGAG---GACTCGA----GCGCCCTG--------CCCTGGT---------CC  33
                             |..||| ||   .|||.||    |||.||.|        ||..|||         ||
Sbjct  149  TCTAGCTTGCTCACTTTACATCC-AGCCACACTGGAGATGGCGGCCGGAGGCGGGCCCGAGGTGGGGCGTGACC  221

Query   34  ATCAACAGGGACGATTA-CGAGCTGCAGGAGGTGATC----GGGAGTGGAGCAACTGCTGTAGTCCAAGCAGCT  102
            |.| .|||.|||| |.| ||.|||||     ||| ||    |||||||||||||||||||||||||||||||||
Sbjct  222  AGC-GCAGTGACG-TCAGCGCGCTGC-----GTG-TCGGCAGGGAGTGGAGCAACTGCTGTAGTCCAAGCAGCT  287

Query  103  TATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  TATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGA  361

Query  177  ACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGG  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  ACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGG  435

Query  251  TAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTG  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  TAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTG  509

Query  325  GCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGG  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  GCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGG  583

Query  399  GCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  584  GCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATG  657

Query  473  GCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTG  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  658  GCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTG  731

Query  547  AGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAGGTCCGTGGTTATGATTTCAA  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  732  AGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAGGTCCGTGGTTATGATTTCAA  805

Query  621  AGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCAC  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806  AGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCAC  879

Query  695  CAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATG  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  880  CAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATG  953

Query  769  CTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAGACCAAC  842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954  CTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAGACCAAC  1027

Query  843  AGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATTTCTTCAAGAAAAAACATTGC  916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028  AGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATTTCTTCAAGAAAAAACATTGC  1101

Query  917  AGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAG---------------------------------------  951
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1102  AGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAGGATGGCTATAATCAAAAAGACAGTAACAACTGTTGGTAA  1175

Query  952  --------------------------------------------------------------------------  951
                                                                                      
Sbjct 1176  AGATGTGGAGAGATTGGAACACTTCTGCACTGGTGATGGGAATGTGAAATGGTGCAGCCACTTTGGAAAGCAGT  1249

Query  952  --------------------------------------------------------------------------  951
                                                                                      
Sbjct 1250  CTGGCAGTTCCTCAGAAGCCTAAACAAAGTCACCAGGTGACCCAGCAGTTCTACTCCTAGGCACACGCCAGAGA  1323

Query  952  ---------GTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAGGATGGAGGCTGGGAGTGGAG  1016
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324  ATTGAAAACGTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAGGATGGAGGCTGGGAGTGGAG  1397

Query 1017  TGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACTCAGGTCTCCCCGAGTGAAAG  1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398  TGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACTCAGGTCTCCCCGAGTGAAAG  1471

Query 1091  AATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGCTCCAAGTTCCAGAACAGATC  1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472  AATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGCTCCAAGTTCCAGAACAGATC  1545

Query 1165  TCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTCTCTCTCCCACCCACCGCAGA  1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546  TCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTCTCTCTCCCACCCACCGCAGA  1619

Query 1239  GCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTAC  1312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620  GCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTAC  1693

Query 1313  TAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAGATACAGCAGAG  1386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694  TAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAGATACAGCAGAG  1767

Query 1387  GGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAGTGGCAGCTAATTTGCA  1460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768  GGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAGTGGCAGCTAATTTGCA  1841

Query 1461  GAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATCTGGTGTCGAAGGCTCAGATA  1534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842  GAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATCTGGTGTCGAAGGCTCAGATA  1915

Query 1535  TTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGC---------------------------  1581
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 1916  TTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAACCCTGGAAGAGGCGGCC  1989

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 1990  TAAGGAGATTCCACACATGCGTATCTCTGTTGCTTCTATTGGCCTAAACCCACTACTGCCAAAGAACCCAGCAA  2063

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2064  CAAACCTCCCGGCTAGGAGCTTTAGAAGTCTTTATGTTCTTCCTGCCATCATTCCTCCTTTTCCCACAGGGAAA  2137

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2138  GAAAAGTTGGATCACTAGTGGCCAGCATCCCCAGAGTTCCGTTAGTAAACTTACTTCATATGTCCCCTGTCTTC  2211

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2212  CTCCATCTGAGAAGTGGCCCATGTGCTTCAAGGCCCAGGAGGGAGATCTGTCAGCTCATTCTTGCCTTACTCCA  2285

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2286  ATGATGGCCCAGGTGGAAAAGTAGCAGCTGTATCGGGCTTCCTCATCCTGCCTGTTCCCCCACACCTGCCAGGA  2359

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2360  TATGGACATCTTGGGATATCTCTTTACCACTGAAGTAGAATTGATTGTTCAGCTGGAGCCCAGAGAATTTAATT  2433

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2434  TAATGTTTTTTCTTTGTACCTGATGTGAATTCTAGCAACCTTTGTTAGGAAAAAGCACAGCCTCAGATGGAGGC  2507

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2508  AGCCTAAACTGTGTTCTTGTTTTGTTCATGGTGTTTCTAAGCGTTTTGCTGAAGCTGCTCTCAGGCACCCCCTT  2581

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2582  CTTCATTGCTCTCTCCAGAAAGGGTTGCTAGCCTTAACTTCAGCTGGTGCAAAACATCTGACTGTAGCCGAACT  2655

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2656  TCAGCCATCAGATCCTTCAAAGTGGAACTTTGGATTGTTTTTACAGACAACATCGAGTAATGGCTTGTAAATGT  2729

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2730  GAATTTTGCCAGAGGTGGTTTTTGAACAGGAAAATCATAATTCATATCATTGGAGAAGTATTTATTTTCAAATA  2803

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2804  TCAAATTGAAGAAAAACTCAATCCTCCCATGAAAATCAGTTCGCCTGGCCTCCAAGTCGTGAGGAAATGGGTAT  2877

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2878  GCAAGGCTGAGATTTCTACAGCAATAAAGGAGACACACACTGGGCCAGAGAGGCCTGCCTTCTGCCTGCTCTCC  2951

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 2952  TGCACTGACCCTTTGGAGGGGGTCTCTGTGTGCTGAAGCTAACTCAAGATGGAAAGTGAAACCACATGTGCCGT  3025

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3026  GACCTTTAGGTTTTATGAGTAGACAGTGTTCATTTGATTTTCTACAGAAATAATATAAATTATTCTTTAGGTTT  3099

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3100  AAAAAAGAGCACTCATAATGCAATATGTGAATAATCAGTGAGGTTGATTTTTCTTTTTTCCTACCGTTTCATAG  3173

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3174  TCTTTGTCTAACTGCTAGTAACCCTACCGAGTTTTATATATGAGTGGGATACTCAATCTGGCCTTAAAAAGATA  3247

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3248  CACAAAGATGGGCTGTGGGTCCCTGGAAAGGGGGAGAGTTGCCCTTTACAGAATCACTCGAGCCCTTTCCAGCA  3321

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3322  CTGTTGGTCTGATGAACAAGGTTGTTTTACCTTATTTTCTCTTGGAACATATCTGAAAACCTTCCCCACAAATA  3395

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3396  ACTTGTCACACCTTTTGTTTCATTCTGAGTCTTTAGTTTTAGTCATGGGCTTTCTTCACCTGCTCTAGGTGCAA  3469

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3470  AGGCATGTTGGGAAAGAGATGGATGTTGGGGAGGAAGAGAGGAGATGGATTTCAGTTGGGAGTTAGGAGGAGAG  3543

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3544  TAGGTGAGATGATCAGACACCGGAGTTCAACGTCCCAGCAGTCTTGGTAAAAGGAGGGAGCCTGCTGAGCCAGG  3617

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3618  AGGGAGAAAAGAAGATTGACCAGCTTGCTAGAAAAATACTTAGCTTTTCTTTTTCTTTTTTTGTGGAGGGGGGA  3691

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3692  CGGAGAGGAACAAGGATGGGGAGGTAGGAATGAGGTATAGAAAAGAGATAGCATCTTCTTTGGCACAAGACTAG  3765

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3766  TGGCTTACCGCTTACCTTAGAGTTTTGTTTTTTTTTTTTCAAACCCATCAAAATCTACTTATTTATGAATCCAA  3839

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3840  GGGGTGGCAGCATCACTCTGTTCTAGCATTCTTTGTGGAGATGGTCTGGTGCCTAGCTGGGAGTGAGCAGCAGC  3913

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3914  CCATCCCCTGTTCACTTTCTCTAGCCCATCATTACCTGTGAACTGCAGTGGGGCAGTCATGGCAAATAGAATTG  3987

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 3988  GGCTGGGGTTTCTCCTTCTTTTCAGTTCATTGTTTGCCCTGCTAGGAATTAGAAGACAGACACCATGTCCCAGG  4061

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4062  ACAGTGTTACTTCTTCTGCATGATGTGTGGTAGACTCCCTTTGCTGGCTTGTGCAGTGATACTGAGAAAATACA  4135

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4136  TGAACAGAAACTGCCCAGGTGGAACAGCACGTAACCTAGTGAGTGACTGTACTCCTTTCTAGGAATGCTGATTC  4209

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4210  AGAGTGCACCTCTTTGACTAGGTCCCAGGATCCCCTTGTCCCTGGAGTAGGGACTAACTATAGCACAAAGTAAT  4283

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4284  ATGTGCCAATGCTATTTGTGAAATGTTTGGTCTTTCTAAACGACTAAAGGATTTGTTGGGTTTTTGCTTAAGTT  4357

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4358  TTGAACCAAATCCTAGAGCCAGCTGATAATATTTAATAATCTGGAGGAGAGAATAATGATGTACCAATAAGTGG  4431

Query 1582  --------------------------------------------------------------------------  1581
                                                                                      
Sbjct 4432  AGATTCCTCCTTATGATGTATGCTAGGTTATGGAAGATGTAAAATATTCAACTTTTTCCTCCTTTTTTTGGACT  4505

Query 1582  -----------------------------------------------------  1581
                                                                 
Sbjct 4506  TTGTATTTTACTGCATGTTTTCTTCATTTTTAATCAATAAAGAGTAAATTGTC  4558

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