Nucleotide Global Alignment
Description
- Query:
- TRCN0000468244
- Subject:
- XR_001740396.1
- Aligned Length:
- 4567
- Identities:
- 1559
- Gaps:
- 2995
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCTACTTTGCTGCCCTTTGGTCGCCATGCTTAGTGTGGCTACTGCCTCTGTGCTACTTGAGGCTCTCCTACGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTTTCGATGCCTTCGATGAACCTCTACCTAAGCACTTCTTCCCTTTCACCGCGAACTCCTACCTTCTCGGGTT 148
Query 1 -----------------ATGTCCGAG---GACTCGA----GCGCCCTG--------CCCTGGT---------CC 33
|..||| || .|||.|| |||.||.| ||..||| ||
Sbjct 149 TCTAGCTTGCTCACTTTACATCC-AGCCACACTGGAGATGGCGGCCGGAGGCGGGCCCGAGGTGGGGCGTGACC 221
Query 34 ATCAACAGGGACGATTA-CGAGCTGCAGGAGGTGATC----GGGAGTGGAGCAACTGCTGTAGTCCAAGCAGCT 102
|.| .|||.|||| |.| ||.||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 222 AGC-GCAGTGACG-TCAGCGCGCTGC-----GTG-TCGGCAGGGAGTGGAGCAACTGCTGTAGTCCAAGCAGCT 287
Query 103 TATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGA 361
Query 177 ACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGG 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGG 435
Query 251 TAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGGATATTATTAAGCACATTGTG 509
Query 325 GCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGG 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGG 583
Query 399 GCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATG 657
Query 473 GCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTG 731
Query 547 AGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAGGTCCGTGGTTATGATTTCAA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAGGTCCGTGGTTATGATTTCAA 805
Query 621 AGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCAC 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGCTCCTTATCATAAATATCCAC 879
Query 695 CAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATG 953
Query 769 CTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAGACCAAC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAGACCAAC 1027
Query 843 AGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATTTCTTCAAGAAAAAACATTGC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATTTCTTCAAGAAAAAACATTGC 1101
Query 917 AGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAG--------------------------------------- 951
|||||||||||||||||||||||||||||||||||
Sbjct 1102 AGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAGGATGGCTATAATCAAAAAGACAGTAACAACTGTTGGTAA 1175
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1176 AGATGTGGAGAGATTGGAACACTTCTGCACTGGTGATGGGAATGTGAAATGGTGCAGCCACTTTGGAAAGCAGT 1249
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1250 CTGGCAGTTCCTCAGAAGCCTAAACAAAGTCACCAGGTGACCCAGCAGTTCTACTCCTAGGCACACGCCAGAGA 1323
Query 952 ---------GTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAGGATGGAGGCTGGGAGTGGAG 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 ATTGAAAACGTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAGGATGGAGGCTGGGAGTGGAG 1397
Query 1017 TGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACTCAGGTCTCCCCGAGTGAAAG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACTCAGGTCTCCCCGAGTGAAAG 1471
Query 1091 AATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGCTCCAAGTTCCAGAACAGATC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGCTCCAAGTTCCAGAACAGATC 1545
Query 1165 TCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTCTCTCTCCCACCCACCGCAGA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTCTCTCTCCCACCCACCGCAGA 1619
Query 1239 GCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTAC 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTAC 1693
Query 1313 TAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAGATACAGCAGAG 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 TAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAGATACAGCAGAG 1767
Query 1387 GGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAGTGGCAGCTAATTTGCA 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAGTGGCAGCTAATTTGCA 1841
Query 1461 GAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATCTGGTGTCGAAGGCTCAGATA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATCTGGTGTCGAAGGCTCAGATA 1915
Query 1535 TTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGC--------------------------- 1581
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAACCCTGGAAGAGGCGGCC 1989
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 1990 TAAGGAGATTCCACACATGCGTATCTCTGTTGCTTCTATTGGCCTAAACCCACTACTGCCAAAGAACCCAGCAA 2063
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2064 CAAACCTCCCGGCTAGGAGCTTTAGAAGTCTTTATGTTCTTCCTGCCATCATTCCTCCTTTTCCCACAGGGAAA 2137
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2138 GAAAAGTTGGATCACTAGTGGCCAGCATCCCCAGAGTTCCGTTAGTAAACTTACTTCATATGTCCCCTGTCTTC 2211
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2212 CTCCATCTGAGAAGTGGCCCATGTGCTTCAAGGCCCAGGAGGGAGATCTGTCAGCTCATTCTTGCCTTACTCCA 2285
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2286 ATGATGGCCCAGGTGGAAAAGTAGCAGCTGTATCGGGCTTCCTCATCCTGCCTGTTCCCCCACACCTGCCAGGA 2359
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2360 TATGGACATCTTGGGATATCTCTTTACCACTGAAGTAGAATTGATTGTTCAGCTGGAGCCCAGAGAATTTAATT 2433
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2434 TAATGTTTTTTCTTTGTACCTGATGTGAATTCTAGCAACCTTTGTTAGGAAAAAGCACAGCCTCAGATGGAGGC 2507
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2508 AGCCTAAACTGTGTTCTTGTTTTGTTCATGGTGTTTCTAAGCGTTTTGCTGAAGCTGCTCTCAGGCACCCCCTT 2581
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2582 CTTCATTGCTCTCTCCAGAAAGGGTTGCTAGCCTTAACTTCAGCTGGTGCAAAACATCTGACTGTAGCCGAACT 2655
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2656 TCAGCCATCAGATCCTTCAAAGTGGAACTTTGGATTGTTTTTACAGACAACATCGAGTAATGGCTTGTAAATGT 2729
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2730 GAATTTTGCCAGAGGTGGTTTTTGAACAGGAAAATCATAATTCATATCATTGGAGAAGTATTTATTTTCAAATA 2803
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2804 TCAAATTGAAGAAAAACTCAATCCTCCCATGAAAATCAGTTCGCCTGGCCTCCAAGTCGTGAGGAAATGGGTAT 2877
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2878 GCAAGGCTGAGATTTCTACAGCAATAAAGGAGACACACACTGGGCCAGAGAGGCCTGCCTTCTGCCTGCTCTCC 2951
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2952 TGCACTGACCCTTTGGAGGGGGTCTCTGTGTGCTGAAGCTAACTCAAGATGGAAAGTGAAACCACATGTGCCGT 3025
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3026 GACCTTTAGGTTTTATGAGTAGACAGTGTTCATTTGATTTTCTACAGAAATAATATAAATTATTCTTTAGGTTT 3099
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3100 AAAAAAGAGCACTCATAATGCAATATGTGAATAATCAGTGAGGTTGATTTTTCTTTTTTCCTACCGTTTCATAG 3173
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3174 TCTTTGTCTAACTGCTAGTAACCCTACCGAGTTTTATATATGAGTGGGATACTCAATCTGGCCTTAAAAAGATA 3247
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3248 CACAAAGATGGGCTGTGGGTCCCTGGAAAGGGGGAGAGTTGCCCTTTACAGAATCACTCGAGCCCTTTCCAGCA 3321
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3322 CTGTTGGTCTGATGAACAAGGTTGTTTTACCTTATTTTCTCTTGGAACATATCTGAAAACCTTCCCCACAAATA 3395
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3396 ACTTGTCACACCTTTTGTTTCATTCTGAGTCTTTAGTTTTAGTCATGGGCTTTCTTCACCTGCTCTAGGTGCAA 3469
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3470 AGGCATGTTGGGAAAGAGATGGATGTTGGGGAGGAAGAGAGGAGATGGATTTCAGTTGGGAGTTAGGAGGAGAG 3543
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3544 TAGGTGAGATGATCAGACACCGGAGTTCAACGTCCCAGCAGTCTTGGTAAAAGGAGGGAGCCTGCTGAGCCAGG 3617
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3618 AGGGAGAAAAGAAGATTGACCAGCTTGCTAGAAAAATACTTAGCTTTTCTTTTTCTTTTTTTGTGGAGGGGGGA 3691
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3692 CGGAGAGGAACAAGGATGGGGAGGTAGGAATGAGGTATAGAAAAGAGATAGCATCTTCTTTGGCACAAGACTAG 3765
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3766 TGGCTTACCGCTTACCTTAGAGTTTTGTTTTTTTTTTTTCAAACCCATCAAAATCTACTTATTTATGAATCCAA 3839
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3840 GGGGTGGCAGCATCACTCTGTTCTAGCATTCTTTGTGGAGATGGTCTGGTGCCTAGCTGGGAGTGAGCAGCAGC 3913
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3914 CCATCCCCTGTTCACTTTCTCTAGCCCATCATTACCTGTGAACTGCAGTGGGGCAGTCATGGCAAATAGAATTG 3987
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3988 GGCTGGGGTTTCTCCTTCTTTTCAGTTCATTGTTTGCCCTGCTAGGAATTAGAAGACAGACACCATGTCCCAGG 4061
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4062 ACAGTGTTACTTCTTCTGCATGATGTGTGGTAGACTCCCTTTGCTGGCTTGTGCAGTGATACTGAGAAAATACA 4135
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4136 TGAACAGAAACTGCCCAGGTGGAACAGCACGTAACCTAGTGAGTGACTGTACTCCTTTCTAGGAATGCTGATTC 4209
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4210 AGAGTGCACCTCTTTGACTAGGTCCCAGGATCCCCTTGTCCCTGGAGTAGGGACTAACTATAGCACAAAGTAAT 4283
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4284 ATGTGCCAATGCTATTTGTGAAATGTTTGGTCTTTCTAAACGACTAAAGGATTTGTTGGGTTTTTGCTTAAGTT 4357
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4358 TTGAACCAAATCCTAGAGCCAGCTGATAATATTTAATAATCTGGAGGAGAGAATAATGATGTACCAATAAGTGG 4431
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4432 AGATTCCTCCTTATGATGTATGCTAGGTTATGGAAGATGTAAAATATTCAACTTTTTCCTCCTTTTTTTGGACT 4505
Query 1582 ----------------------------------------------------- 1581
Sbjct 4506 TTGTATTTTACTGCATGTTTTCTTCATTTTTAATCAATAAAGAGTAAATTGTC 4558
