Nucleotide Global Alignment
Description
- Query:
- TRCN0000468244
- Subject:
- XR_001740397.1
- Aligned Length:
- 4737
- Identities:
- 1581
- Gaps:
- 3156
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGAGGAAGAGGGGAAAGTTTGGCCCGTGCGTGGGGCTGGGGTGGAGGGCGGGACAGAGGGGCTGGGCCCAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAAGCTTCTGTCGCTGCTGCTGCGGAGGCCGAGGACAGGACGTGGGCTGGGCCGGGCAGTGCCGGACTCGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGCAGGAGGCGAGGTCCGCCGGAGCTCTGAGCCCCCGCTGCTCTGCCGCGCGGTGACCCCGCGCCCCGGCGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCCGACCCGTGGCTGTTCCGAGACGATTGGTGGGGGCGCGGCGGCGGCGGCGGCGGCTGTTGGGGGTGGGGAG 296
Query 1 ------------------------------------------------------------------ATGTCCGA 8
||||||||
Sbjct 297 ACGCGCGGCGAGGAGACGAGCGAGGTCAGCGAGTTTGAGGGAGGACCGCGAGCCGCTGCCGCCGTCATGTCCGA 370
Query 9 GGACTCGAGCGCCCTGCCCTGGTCCATCAACAGGGACGATTACGAGCTGCAGGAGGTGATCGGGAGTGGAGCAA 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGACTCGAGCGCCCTGCCCTGGTCCATCAACAGGGACGATTACGAGCTGCAGGAGGTGATCGGGAGTGGAGCAA 444
Query 83 CTGCTGTAGTCCAAGCAGCTTATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAA 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGCTGTAGTCCAAGCAGCTTATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAA 518
Query 157 TGTCAAACTAGCATGGATGAACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTCAAACTAGCATGGATGAACTCCTGAAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATC 592
Query 231 TTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAGGTTCTGTTCTGG 666
Query 305 ATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATA 740
Query 379 CTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAGAGATGTGAAAGCTGGAAA 814
Query 453 CATTCTTCTTGGAGAAGATGGCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CATTCTTCTTGGAGAAGATGGCTCAGTACAGATTGCAGACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTG 888
Query 527 ATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAG 962
Query 601 GTCCGTGGTTATGATTTCAAAGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTCCGTGGTTATGATTTCAAAGCTGATATTTGGAGTTTTGGAATTACAGCAATTGAATTGGCTACAGGGGCGGC 1036
Query 675 TCCTTATCATAAATATCCACCAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCCTTATCATAAATATCCACCAATGAAGGTTTTAATGCTGACACTGCAGAACGATCCTCCTTCTTTGGAAACTG 1110
Query 749 GTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAA 1184
Query 823 GATCCAGAAAAAAGACCAACAGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATCCAGAAAAAAGACCAACAGCAGCAGAACTATTAAGGCACAAATTTTTCCAGAAAGCAAAGAATAAAGAATT 1258
Query 897 TCTTCAAGAAAAAACATTGCAGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAG------------------- 951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTTCAAGAAAAAACATTGCAGAGAGCACCAACCATTTCTGAAAGAGCAAAAAAGGATGGCTATAATCAAAAAG 1332
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1333 ACAGTAACAACTGTTGGTAAAGATGTGGAGAGATTGGAACACTTCTGCACTGGTGATGGGAATGTGAAATGGTG 1406
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1407 CAGCCACTTTGGAAAGCAGTCTGGCAGTTCCTCAGAAGCCTAAACAAAGTCACCAGGTGACCCAGCAGTTCTAC 1480
Query 952 -----------------------------GTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAG 996
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCCTAGGCACACGCCAGAGAATTGAAAACGTTCGGAGAGTACCAGGTTCCAGTGGGCGTCTTCATAAGACAGAG 1554
Query 997 GATGGAGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GATGGAGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGGAAAGCAGCAATTTCACAACT 1628
Query 1071 CAGGTCTCCCCGAGTGAAAGAATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGC 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGGTCTCCCCGAGTGAAAGAATCAATATCAAATTCTGAGCTCTTTCCAACAACTGATCCTGTGGGTACTTTGC 1702
Query 1145 TCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTC 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTC 1776
Query 1219 TCTCTCCCACCCACCGCAGAGCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCTCTCCCACCCACCGCAGAGCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAA 1850
Query 1293 GATCCCAATCAGTCTAGTACTAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATCCCAATCAGTCTAGTACTAAGATTAAGGAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTC 1924
Query 1367 CTGGGAGAGATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CTGGGAGAGATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTA 1998
Query 1441 ATAGTGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATC 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ATAGTGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTGGCATC 2072
Query 1515 TGGTGTCGAAGGCTCAGATATTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGC------- 1581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGGTGTCGAAGGCTCAGATATTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCA 2146
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2147 CAACCCTGGAAGAGGCGGCCTAAGGAGATTCCACACATGCGTATCTCTGTTGCTTCTATTGGCCTAAACCCACT 2220
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2221 ACTGCCAAAGAACCCAGCAACAAACCTCCCGGCTAGGAGCTTTAGAAGTCTTTATGTTCTTCCTGCCATCATTC 2294
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2295 CTCCTTTTCCCACAGGGAAAGAAAAGTTGGATCACTAGTGGCCAGCATCCCCAGAGTTCCGTTAGTAAACTTAC 2368
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2369 TTCATATGTCCCCTGTCTTCCTCCATCTGAGAAGTGGCCCATGTGCTTCAAGGCCCAGGAGGGAGATCTGTCAG 2442
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2443 CTCATTCTTGCCTTACTCCAATGATGGCCCAGGTGGAAAAGTAGCAGCTGTATCGGGCTTCCTCATCCTGCCTG 2516
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2517 TTCCCCCACACCTGCCAGGATATGGACATCTTGGGATATCTCTTTACCACTGAAGTAGAATTGATTGTTCAGCT 2590
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2591 GGAGCCCAGAGAATTTAATTTAATGTTTTTTCTTTGTACCTGATGTGAATTCTAGCAACCTTTGTTAGGAAAAA 2664
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2665 GCACAGCCTCAGATGGAGGCAGCCTAAACTGTGTTCTTGTTTTGTTCATGGTGTTTCTAAGCGTTTTGCTGAAG 2738
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2739 CTGCTCTCAGGCACCCCCTTCTTCATTGCTCTCTCCAGAAAGGGTTGCTAGCCTTAACTTCAGCTGGTGCAAAA 2812
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2813 CATCTGACTGTAGCCGAACTTCAGCCATCAGATCCTTCAAAGTGGAACTTTGGATTGTTTTTACAGACAACATC 2886
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2887 GAGTAATGGCTTGTAAATGTGAATTTTGCCAGAGGTGGTTTTTGAACAGGAAAATCATAATTCATATCATTGGA 2960
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 2961 GAAGTATTTATTTTCAAATATCAAATTGAAGAAAAACTCAATCCTCCCATGAAAATCAGTTCGCCTGGCCTCCA 3034
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3035 AGTCGTGAGGAAATGGGTATGCAAGGCTGAGATTTCTACAGCAATAAAGGAGACACACACTGGGCCAGAGAGGC 3108
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3109 CTGCCTTCTGCCTGCTCTCCTGCACTGACCCTTTGGAGGGGGTCTCTGTGTGCTGAAGCTAACTCAAGATGGAA 3182
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3183 AGTGAAACCACATGTGCCGTGACCTTTAGGTTTTATGAGTAGACAGTGTTCATTTGATTTTCTACAGAAATAAT 3256
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3257 ATAAATTATTCTTTAGGTTTAAAAAAGAGCACTCATAATGCAATATGTGAATAATCAGTGAGGTTGATTTTTCT 3330
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3331 TTTTTCCTACCGTTTCATAGTCTTTGTCTAACTGCTAGTAACCCTACCGAGTTTTATATATGAGTGGGATACTC 3404
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3405 AATCTGGCCTTAAAAAGATACACAAAGATGGGCTGTGGGTCCCTGGAAAGGGGGAGAGTTGCCCTTTACAGAAT 3478
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3479 CACTCGAGCCCTTTCCAGCACTGTTGGTCTGATGAACAAGGTTGTTTTACCTTATTTTCTCTTGGAACATATCT 3552
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3553 GAAAACCTTCCCCACAAATAACTTGTCACACCTTTTGTTTCATTCTGAGTCTTTAGTTTTAGTCATGGGCTTTC 3626
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3627 TTCACCTGCTCTAGGTGCAAAGGCATGTTGGGAAAGAGATGGATGTTGGGGAGGAAGAGAGGAGATGGATTTCA 3700
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3701 GTTGGGAGTTAGGAGGAGAGTAGGTGAGATGATCAGACACCGGAGTTCAACGTCCCAGCAGTCTTGGTAAAAGG 3774
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3775 AGGGAGCCTGCTGAGCCAGGAGGGAGAAAAGAAGATTGACCAGCTTGCTAGAAAAATACTTAGCTTTTCTTTTT 3848
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3849 CTTTTTTTGTGGAGGGGGGACGGAGAGGAACAAGGATGGGGAGGTAGGAATGAGGTATAGAAAAGAGATAGCAT 3922
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3923 CTTCTTTGGCACAAGACTAGTGGCTTACCGCTTACCTTAGAGTTTTGTTTTTTTTTTTTCAAACCCATCAAAAT 3996
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 3997 CTACTTATTTATGAATCCAAGGGGTGGCAGCATCACTCTGTTCTAGCATTCTTTGTGGAGATGGTCTGGTGCCT 4070
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4071 AGCTGGGAGTGAGCAGCAGCCCATCCCCTGTTCACTTTCTCTAGCCCATCATTACCTGTGAACTGCAGTGGGGC 4144
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4145 AGTCATGGCAAATAGAATTGGGCTGGGGTTTCTCCTTCTTTTCAGTTCATTGTTTGCCCTGCTAGGAATTAGAA 4218
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4219 GACAGACACCATGTCCCAGGACAGTGTTACTTCTTCTGCATGATGTGTGGTAGACTCCCTTTGCTGGCTTGTGC 4292
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4293 AGTGATACTGAGAAAATACATGAACAGAAACTGCCCAGGTGGAACAGCACGTAACCTAGTGAGTGACTGTACTC 4366
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4367 CTTTCTAGGAATGCTGATTCAGAGTGCACCTCTTTGACTAGGTCCCAGGATCCCCTTGTCCCTGGAGTAGGGAC 4440
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4441 TAACTATAGCACAAAGTAATATGTGCCAATGCTATTTGTGAAATGTTTGGTCTTTCTAAACGACTAAAGGATTT 4514
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4515 GTTGGGTTTTTGCTTAAGTTTTGAACCAAATCCTAGAGCCAGCTGATAATATTTAATAATCTGGAGGAGAGAAT 4588
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4589 AATGATGTACCAATAAGTGGAGATTCCTCCTTATGATGTATGCTAGGTTATGGAAGATGTAAAATATTCAACTT 4662
Query 1582 -------------------------------------------------------------------------- 1581
Sbjct 4663 TTTCCTCCTTTTTTTGGACTTTGTATTTTACTGCATGTTTTCTTCATTTTTAATCAATAAAGAGTAAATTGTCC 4736
Query 1582 - 1581
Sbjct 4737 T 4737
