Nucleotide Global Alignment

Description

Query:
TRCN0000468356
Subject:
XR_427107.3
Aligned Length:
4535
Identities:
1280
Gaps:
3247

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATGTAAGAGGCAGGGCACTCGGCTGCGGATGGGTAACAGGGCGTGGGCTGGCACACTTACTTGCACCAGTGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGAGAGGGGGTGCAGGCTGAGGAGCTGCCCAGAGCACCGCTCACACTCCCAGAGTACCTGAAGTCGGCATTTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATGACAGGTGACAAGGGTCCCCAAAGGCTAAGCGGGTCCAGCTATGGTTCCATCTCCAGCCCGACCAGCCCGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCAGCCCAGGGCCACAGCAAGCACCTCCCAGAGAGACCTACCTGAGTGAGAAGATCCCCATCCCAGACACAAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCGGGCACCTTCAGCCTGCGGAAGCTATGGGCCTTCACGGGGCCTGGCTTCCTCATGAGCATTGCTTTCCTGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCAGGAAACATCGAGTCAGATCTTCAGGCTGGCGCCGTGGCGGGATTCAAACTTCTCTGGGTGCTGCTCTGGG  444

Query    1  -----------------------------------------------------------------ATGGTGCGA  9
                                                                             .||| ||||
Sbjct  445  CCACCGTGTTGGGCTTGCTCTGCCAGCGACTGGCTGCACGTCTGGGCGTGGTGACAGGCAAGGACTTGG-GCGA  517

Query   10  TGTCAGCTCACTGCAACCTCTACCTCCC--AGGTGCCCCGCACCGTCCTCTGGCTGACCATCGAGCTAGCCATT  81
            .||       ||||.|.||||||..|||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  GGT-------CTGCCATCTCTACTACCCTAAGGTGCCCCGCACCGTCCTCTGGCTGACCATCGAGCTAGCCATT  584

Query   82  GTGGGCTCCGACATGCAGGAAGTCATCGGCACGGCCATTGCATTCAATCTGCTCTCAGCTGGACGAATCCCACT  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  585  GTGGGCTCCGACATGCAGGAAGTCATCGGCACGGCCATTGCATTCAATCTGCTCTCAGCTGGACGAATCCCACT  658

Query  156  CTGGGGTGGCGTCCTCATCACCATCGTGGACACCTTCTTCTTCCTCTTCCTCGATAACTACGGGCTGCGGAAGC  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  659  CTGGGGTGGCGTCCTCATCACCATCGTGGACACCTTCTTCTTCCTCTTCCTCGATAACTACGGGCTGCGGAAGC  732

Query  230  TGGAAGCTTTTTTTGGACTCCTTATAACCATTATGGCCTTGACCTTTGGCTATGAGTATGTGGTGGCGCGTCCT  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  733  TGGAAGCTTTTTTTGGACTCCTTATAACCATTATGGCCTTGACCTTTGGCTATGAGTATGTGGTGGCGCGTCCT  806

Query  304  GAGCAGGGAGCGCTTCTTCGGGGCCTGTTCCTGCCCTCGTGCCCGGGCTGCGGCCACCCCGAGCTGCTGCAGGC  377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807  GAGCAGGGAGCGCTTCTTCGGGGCCTGTTCCTGCCCTCGTGCCCGGGCTGCGGCCACCCCGAGCTGCTGCAGGC  880

Query  378  GGTGGGCATTGTTGGCGCCATCATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGA  451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  881  GGTGGGCATTGTTGGCGCCATCATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGA  954

Query  452  TAGACCGGGCCCGCCGAGCGGACATCAGAGAAGCCAACATGTACTTCCTGATTGAGGCCACCATCGCCCTGTCC  525
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  955  TAGACCGGGCCCGCCGAGCAGACATCAGAGAAGCCAACATGTACTTCCTGATTGAGGCCACCATCGCCCTGTCC  1028

Query  526  GTCTCCTTTATCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAGGCCTTCTACCAGAAAACCAACCAGGCTGC  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029  GTCTCCTTTATCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAGGCCTTCTACCAGAAAACCAACCAGGCTGC  1102

Query  600  GTTCAACATCTGTGCCAACAGCAGCCTCCACGACTACGCCAAGATCTTCCCCATGAACAACGCCACCGTGGCCG  673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103  GTTCAACATCTGTGCCAACAGCAGCCTCCACGACTACGCCAAGATCTTCCCCATGAACAACGCCACCGTGGCCG  1176

Query  674  TGGACATTTACCAGGGGGGCGTGATCCTGGGCTGCCTGTTCGGCCCCGCGGCCCTCTACATCTGGGCCATAGGT  747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177  TGGACATTTACCAGGGGGGCGTGATCCTGGGCTGCCTGTTCGGCCCCGCGGCCCTCTACATCTGGGCCATAGGT  1250

Query  748  CTCCTGGCGGCTGGGCAGAGCTCCACCATGACGGGCACCTACGCGGGACAGTTCGTGATGG-------------  808
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct 1251  CTCCTGGCGGCTGGGCAGAGCTCCACCATGACGGGCACCTACGCGGGACAGTTCGTGATGGAGGCTGGAGTGCA  1324

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1325  ATGGCGCGATCTCCGGCTCACCGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGACC  1398

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1399  AGCTGGGATTACAGGCCACCACACCCAGCTAATTTTGTATTTTCAGTAAAGACGGGGTTTCTCCATGTTGGTCA  1472

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1473  GGGTGGTCTCGAACTCCCAGCCTCAGGTGATCTGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGA  1546

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1547  GCCACCGCGCCCGGCTCTTTCTTTCTTTTTTGAGACAGGATTTCACTCTGTTGCTCAGGCTGGAGTGCAATGGC  1620

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1621  GCCATCACAGCTCGCTGCAGCCTCAACTTCAGCCTCCCGAGTCATTGGGACTACAGGCTCATGCCACCACACCA  1694

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1695  GGCTAATTTTTAAAATTATTTGTAGAGATGTGGTCTTCCTATGTTTCCCAGGCTGGTCTCGAACTCCTGGGCTC  1768

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1769  AAGTGATCTTCCCGCCTTGGCTTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCCCACTCAGCTTTGTTTCC  1842

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1843  TTCATGTAGCCCAGAGGGCGACACTATAAGCCCCATTTTACAGATGAGAAAACAGATCCTGACAGATGAGGTGA  1916

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1917  CTTGCTGGAAGCTGCAGACCCAGGACTAACAGAAGCCTTTTCCCCAAAACTGTTTAGTCTTCAGCAACCAGCTA  1990

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 1991  TGGGATGGGAGCTCCCCATTTCTCCCCACCCATCCCCTCTTGCCACCTAGGGACAGAGCTGTCCCAGTTCAACA  2064

Query  809  --------------------------------------------------------------------------  808
                                                                                      
Sbjct 2065  GTGGAAAAACAGAGCATGCCCCCAGGGATAAATCGGTTGAGGGACTACAGAGGATCTCTCCTCTGGAATCCCCA  2138

Query  809  ---------------------------------------AGGGCTTCCTGAGGCTGCGGTGGTCACGCTTCGCC  843
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 2139  GTCCTGTCTACTCCTCACCAAGGAGTTCACCCCCACCCCAGGGCTTCCTGAGGCTGCGGTGGTCACGCTTCGCC  2212

Query  844  CGTGTCCTCCTCACCCGCTCCTGCGCCATCCTGCCCACCGTGCTCGTGGCTGTCTTCCGGGACCTGAGGGACTT  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213  CGTGTCCTCCTCACCCGCTCCTGCGCCATCCTGCCCACCGTGCTCGTGGCTGTCTTCCGGGACCTGAGGGACTT  2286

Query  918  GTCGGGCCTCAATGATCTGCTCAACGTGCTGCAGAGCCTGCTGCTCCCGTTCGCCGTGCTGCCCATCCTCACGT  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287  GTCGGGCCTCAATGATCTGCTCAACGTGCTGCAGAGCCTGCTGCTCCCGTTCGCCGTGCTGCCCATCCTCACGT  2360

Query  992  TCACCAGCATGCCCACCCTCATGCAGGAGTTTGCCAATGGCCTGCTGAACAAGGTCGTCACCTCTTCCATCATG  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361  TCACCAGCATGCCCACCCTCATGCAGGAGTTTGCCAATGGCCTGCTGAACAAGGTCGTCACCTCTTCCATCATG  2434

Query 1066  GTGCTAGTCTGCGCCATCAACCTCTACTTCGTGGTCAGCTATCTGCCCAGCCTGCCCCACCCTGCCTACTTCGG  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435  GTGCTAGTCTGCGCCATCAACCTCTACTTCGTGGTCAGCTATCTGCCCAGCCTGCCCCACCCTGCCTACTTCGG  2508

Query 1140  CCTTGCAGCCTTGCTGGCCGCAGCCTACCCGGGCCTCAGCACCTACCTGGTCTGGACCTGTTGCCTTGCCCACG  1213
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509  CCTTGCAGCCTTGCTGGCCGCAGCCTACCTGGGCCTCAGCACCTACCTGGTCTGGACCTGTTGCCTTGCCCACG  2582

Query 1214  GAGCCACCTTTCTGGCCCACAGCTCCCACCACCACTTCCTGTATGGGCTCCTTGAAGAGGACCAGAAAGGGGAG  1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583  GAGCCACCTTTCTGGCCCACAGCTCCCACCACCACTTCCTGTATGGGCTCCTTGAAGAGGACCAGAAAGGGGAG  2656

Query 1288  ACCTCTGGC-----------------------------------------------------------------  1296
            |||||||||                                                                 
Sbjct 2657  ACCTCTGGCTAGGCCCACACCAGGGCCTGGCTGGGAGTGGCATGTATGACGTGACTGGCCTGCTGGATGTGGAG  2730

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2731  GGGGCGCGTGCAGGCAGCAGGATAGAGTGGGACAGTTCCTGAGACCAGCCAACCTGGGGGCTTTAGGGACCTGC  2804

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2805  TGTTTCCTAGCGCAGCCATGTGATTACCCTCTGGGTCTCAGTGTCCTCATCTGTAAAATGGAGACACCACCACC  2878

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2879  CTTGCCATGGAGGTTAAGCACTTTAACACAGTGTCTGGCACTTGGGACAAAAACAAACAAACGAAAAACATTTC  2952

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2953  AAAAGGTATTTATTGAGCACCTGCAGGCGTGACCTGACAGCCCAAGGGTGGGTGGGGTGAGGGCTTGAGGACTT  3026

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3027  GGGCGGGACACAGGCTCCAAACTGGAGCTTGAAATAGTGTCTGATGAATGTTAAATTATCTATCTATCTATTTA  3100

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3101  TTTATTTATTTGAGACAGGGAAAGGGTCTCCCTCTGTTGCCAAGGCTGGAGTGCAGTGGCGCAATCTTAACTCA  3174

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3175  TTGCAACCTCCACCTTCTGGGTTCAAGCGATTCTCTTTATTCAGCCCCGGGAGTGGCGCGCGCCACCACGCCCA  3248

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3249  GCTAATTTGTGTATTTTCAGCAGAGACGGGGTTTGCCATGCTGGCCAGGCTGGTCTCGAACTGCTGGATTCAAG  3322

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3323  TGATCCGCCCATCTCCGTCTCCCAAAGTGCTGGGAATTACAGGCGTGAGCCACCAAACCCGGCCTGATTAAAGT  3396

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3397  TAAATAAATACTAGTTCCCTTCTCGTCCAAAGGAGCAGGGAATGGGAACCGGGAAGGCACGAAGTCTCTAAAGC  3470

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3471  ATCCAGAAGACCCCTACACCAGGGTCTGGTCCGCTCCTATTCGCCGCAGCCTTTCTGTTCCGCCTGCAACCCAT  3544

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3545  TTTCCAGACAGTAAAACGGCGGCGCACTTCTTTCTCCGTCAGGCACCAGGTCATAAGGAACCCAAGAGTCTGTG  3618

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3619  CCTCTGAGGCCCAAATTATTTGCTGTTTCCTCAGGGGAGCCGGCGGCCGCGACTCCCACGCCGCGCCGTTACCG  3692

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3693  CTCCCTCTCTGCTGACTGCTCCCCCTAGGGGCAGAGACGGTCCCGACGCCCGCCATCCCGCCCCGGCCTCACCC  3766

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3767  CTCCCCGCCAGGCGGAACGACGCGGGGAGGCGGGCGCTCGGGGCTCGCGCCAGGGGCCCCAGAATCCTTCGGGG  3840

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3841  AGAGTGGGTGGGAGGAAGCTGTGTGGGCGGGGAGCCCCCTCTGCCTTAGGGAGCGGCTGGGCACCCATTCGCCC  3914

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3915  CATTCAGGGGCTGCACTTTATAGACGTTCCCTAGGCTGTTTCTAGGCTCCCCCAAGTCCCTCCTCCAGCCTCGT  3988

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 3989  CGGGTCCCTCAGACCCCAGCCCAGGACCTGCGGAGGGCCGCAGCGAGGAGAGGCCAACAGGCCTTTCCCTAGAG  4062

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4063  TTGAACCTGGGCCGGGTGTTGCACCTGGAAGAACCCCCGATTTCCTGGGGACCCAGCAGGGCAGGCGGCCTGGC  4136

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4137  TCCGCGCTCAGGTCCGGACGCTTGTTTATGAGAAGAATTTCCTCTTTCTTAAAAGGGCAACGATGCGAGTGGGT  4210

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4211  CCCTCAAGGAGAGAAGAGATGGGACCGGTCTGGTGCGACCTGGGCAAGCGCTGCAGAGGGTACCTGGGCAAGAG  4284

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4285  GGCCGCCCGCCTCCTCTGGGTTTGGCACTGGAGAAGATGGGTCCATGCCAGCTGAAGGAGGAGATGGATGGGGG  4358

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4359  ACGTTTAGCGAAGAAAGGCATCTCCCAGATCCTTTAGCCTCCTGGAAGTGCCCCCGTTGTACCCCCTACACACC  4432

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 4433  CCTCTTGGCATTGAGTGCCAGTCCTCTGCCAGGCTCTGTGTTACAAGTTGGGGAGGGCGGCAAAGTCCCGAATT  4506

Query 1297  ---------------------  1296
                                 
Sbjct 4507  AAAGATGTCAGTTCTCAAGGA  4527

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