Nucleotide Global Alignment

Description

Query:
TRCN0000468540
Subject:
XR_001743238.1
Aligned Length:
2447
Identities:
1672
Gaps:
741

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTGCTAAGACTGTGGGTCGCCGGAGGTGGTGGGAGTTAGTTTTGGCAGCCCGGGCCTGAGAGAGGTCAAGGGT  74

Query    1  ---------------------ATGGTGAAGCAGACTATCCAGATATTCGCGAGGGTGAAGCCCCCTGTCCGGAA  53
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CATTGCAGAGCCAGGGAGGAGATGGTGAAGCAGACTATCCAGATATTCGCGAGGGTGAAGCCCCCTGTCCGGAA  148

Query   54  GCACCAACAAGGGATTTATTCCATAGATGAAGATGAAAAATTAATACCTAGCTTGGAAATCATCTTACCACGTG  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCACCAACAAGGGATTTATTCCATAGATGAAGATGAAAAATTAATACCTAGCTTGGAAATCATCTTACCACGTG  222

Query  128  ATTTGGCAGATGGGTTTGTGAATAATAAGCGAGAAAGCTACAAATTTAAATTTCAAAGAATTTTTGATCAGGAT  201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATTTGGCAGATGGGTTTGTGAATAATAAGCGAGAAAGCTACAAATTTAAATTTCAAAGAATTTTTGATCAGGAT  296

Query  202  GCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTGTCCTGGCAGGTTACAATGGTAC  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTGTCCTGGCAGGTTACAATGGTAC  370

Query  276  CATCTTTGCATATGGGCAAACAGGCAGCGGGAAGACATTCACTATCACAGGGGGTGCAGAGCGTTACAGTGACA  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CATCTTTGCATATGGGCAAACAGGCAGCGGGAAGACATTCACTATCACAGGGGGTGCAGAGCGTTACAGTGACA  444

Query  350  GAGGCATTATCCCAAGGACACTGTCATACATTTTTGAACAGTTACAAAAGGACAGCAGCAAAATATATACAACA  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGGCATTATCCCAAGGACACTGTCATACATTTTTGAACAGTTACAAAAGGACAGCAGCAAAATATATACAACA  518

Query  424  CACATTTCCTATTTGGAAATCTACAATGAATGTGGTTATGATCTTTTGGATCCAAGACATGAAGCCTCCAGTTT  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CACATTTCCTATTTGGAAATCTACAATGAATGTGGTTATGATCTTTTGGATCCAAGACATGAAGCCTCCAGTTT  592

Query  498  GGAAGATTTGCCGAAAGTGACAATACTGGAGGATCCTGATCAGAACATTCACCTGAAAAACTTGACTCTCCATC  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGAAGATTTGCCGAAAGTGACAATACTGGAGGATCCTGATCAGAACATTCACCTGAAAAACTTGACTCTCCATC  666

Query  572  AGGCAACCACAGAGGAAGAAGCTCTGAATTTGCTTTTTTTAGGAGACACCAACCGAATGATTGCAGAGACTCCT  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGGCAACCACAGAGGAAGAAGCTCTGAATTTGCTTTTTTTAGGAGACACCAACCGAATGATTGCAGAGACTCCT  740

Query  646  ATGAACCAAGCTTCAACCCGTTCCCACTGCATTTTCACCATTCATTTGTCAAGCAAGGAACCAGGATCTGCAAC  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATGAACCAAGCTTCAACCCGTTCCCACTGCATTTTCACCATTCATTTGTCAAGCAAGGAACCAGGATCTGCAAC  814

Query  720  TGTACGACATGCCAAACTCCATCTGGTTGACCTGGCTGGTTCAGAGCGAGTTGCAAAGACTGGAGTAGGGGGCC  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGTACGACATGCCAAACTCCATCTGGTTGACCTGGCTGGTTCAGAGCGAGTTGCAAAGACTGGAGTAGGGGGCC  888

Query  794  ATCTTCTAACAGAGGCCAAGTATATCAACTTGTCACTACATTACTTAGAACAGGTTATCATTGCCCTTTCAGAA  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCTTCTAACAGAGGCCAAGTATATCAACTTGTCACTACATTACTTAGAACAGGTTATCATTGCCCTTTCAGAA  962

Query  868  AAGCACCGTTCGCACATTCCTTATAGAAACTCCATGATGACCAGTGTCCTAAGAGACAGTTTGGGAGGGAACTG  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAGCACCGTTCGCACATTCCTTATAGAAACTCCATGATGACCAGTGTCCTAAGAGACAGTTTGGGAGGGAACTG  1036

Query  942  CATGACAACTATGATTGCAACACTCTCCTTGGAGAAAAGGAATCTTGATGAGTCTATATCAACCTGCAGATTTG  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATGACAACTATGATTGCAACACTCTCCTTGGAGAAAAGGAATCTTGATGAGTCTATATCAACCTGCAGATTTG  1110

Query 1016  CACAGCGAGTGGCACTCATAAAGAATGAAGCTGTTCTTAATGAAGAAATTAACCCCAGATTAGTGATTAAACGC  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CACAGCGAGTGGCACTCATAAAGAATGAAGCTGTTCTTAATGAAGAAATTAACCCCAGATTAGTGATTAAACGC  1184

Query 1090  CTACAAAAGGAAATCCAGGAACTGAAGGATGAACTGGCCATGGTCACTGGGGAGCAGAGGACAGAGGCACTCAC  1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CTACAAAAGGAAATCCAGGAACTGAAGGATGAACTGGCCATGGTCACTGGGGAGCAGAGGACAGAGGCACTCAC  1258

Query 1164  AGAAGCAGAGCTCCTTCAGCTGGAAAAACTAATAACATCCTTTTTGGAAGACCAGGATTCAGACAGTAGATTAG  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGAAGCAGAGCTCCTTCAGCTGGAAAAACTAATAACATCCTTTTTGGAAGACCAGGATTCAGACAGTAGATTAG  1332

Query 1238  AGGTTGGCGCGGATATGCGTAAAGTTCATCACTGTTTTCATCATTTAAAGAAACTATTGAATGACAAGAAGATC  1311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGGTTGGCGCGGATATGCGTAAAGTTCATCACTGTTTTCATCATTTAAAGAAACTATTGAATGACAAGAAGATC  1406

Query 1312  CTTGAAAACAATACAGTCTCCTCTGAAAGCAAAGACCAAGATTGTCAAGAACCATTAAAAGAAGAAGAATATAG  1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTTGAAAACAATACAGTCTCCTCTGAAAGCAAAGACCAAGATTGTCAAGAACCATTAAAAGAAGAAGAATATAG  1480

Query 1386  AAAGCTACGAGATATTCTGAAACAGAGAGATAACGAAATCAGTATCCT-TTC----TG-------AAGTGATGA  1447
            |||||||||||||||||||||||||||||||||||||||||.|||||| .||    ||       |||..|.||
Sbjct 1481  AAAGCTACGAGATATTCTGAAACAGAGAGATAACGAAATCAATATCCTGGTCAACATGTTAAAAAAAGAAAAGA  1554

Query 1448  AGAAA-CT----------TCCTCTATCCTGGTTTG---AAAGGGGAAT---GAGAG------------------  1486
            ||||| ||          |||.||...||||..||   |.|.|.||||   ||.||                  
Sbjct 1555  AGAAAGCTCAGGAGGCTCTCCACTTGGCTGGCATGGATAGACGTGAATTCAGACAGTCCCAGAGCCCACCCTTC  1628

Query 1487  -----AGGA----------AATGTCATTAGGATGCCAGGAGGCTTTTGAAATCTTCA--------AGAGGGACC  1537
                 ||||          ||.|||| .||.||||     |.||      |||.|||        |.| ||.||
Sbjct 1629  CGCCTAGGAAACCCAGAAGAAGGTCA-AAGAATGC-----GACT------ATCCTCAGCTCCCTCACA-GGCCC  1689

Query 1538  ACG-CTGACAGCGTTACCATCGATGACAACAAACAGATT-CT------GAAACAGAGATTTTCTGAAGCCAAGG  1603
            |.| || .||||.||    |.|..||.||.|..|||.|| ||      |||| |.|||||||||||||||||||
Sbjct 1690  AGGACT-TCAGCATT----TTGGGGAAAAGATCCAGTTTGCTCCACAAGAAA-ATAGATTTTCTGAAGCCAAGG  1757

Query 1604  CCCTGGGAGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCACCTGAAGGAAGAAATCACCCAGCGGCATATA  1677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758  CCCTGGGAGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCACCTGAAGGAAGAAATCACCCAGCGGCATATA  1831

Query 1678  CAGCAAGTAGCCCTAGGAATCTCGGAAAACATGGCCGTGCCTCTGATGCCAGACCAGCAGGAGGAGAAGCTGCG  1751
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct 1832  CAGCAAGTAGCCCTAGGAATCTCGGAAAACATGGCCGTGCCTCTGATG--------------------------  1879

Query 1752  ATCACAACTGGAGGAAGAAAAGAGAAGGTATAAAACAATGTTCACTCGCCTGAAAGCCCTGAAGGTGGAGATCG  1825
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 1826  AGCACTTGCAGCTGCTCATGGACAAAGCCAAGGTGAAGCTACAGAAAGAGTTTGAAGTCTGGTGGGCAGAGGAG  1899
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 1900  GCCACCAACCTGCAGGTAAATTCTCCAGCAGTGAATTCACTCGATCACACGAAGCCATTTCTCCAGACATCTGA  1973
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 1974  CTCCCAGCATGAACGGTCCCAACTCCTCTCTAACAAAAGTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCACTG  2047
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 2048  GCAGATTCGATGTCTGTGATGTGAATGCCAGGAAAATCCTGCCCTCGCCTTGCCCCAGTCCACACAGCCAGAAA  2121
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 2122  CAGAGCAGCACCAGCACCCCACTGGAAGACAGCATCCCCAAGAGGCCAGTGTCGTCCATCCCTCTCACCGGAGA  2195
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 2196  CAGCCAGACGGACTCGGACATCATCGCCTTCATCAAGGCCAGACAGAGCATTCTGCAGAAGCAATGTTTGGGAA  2269
                                                                                      
Sbjct 1880  --------------------------------------------------------------------------  1879

Query 2270  GCAAT  2274
                 
Sbjct 1880  -----  1879

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