Nucleotide Global Alignment
Description
- Query:
- TRCN0000468663
- Subject:
- XR_929206.2
- Aligned Length:
- 3765
- Identities:
- 1747
- Gaps:
- 1875
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGCCCTCGCGGCCGCACACACATCCACACTCCTCGCCCGGCTGCCTTCCTCCCTCCCTCTTCCCCCTTCCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCCCTGCAGCCGCGTCCACACTGCGCCGCCCGGGCAGCCCAGAGCGCGGCGCGCACGGGCACCGGCGGCGAGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCGCGGCCACTGCCCCTCCCGGGACCCCCTGTACGCCGTCCGCGCCGTCCAGGGTCACACCGGCGACGGAACC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCAGCAATTAGCCAGCATCCCGGGGTCGGCCCCCAGAAGCATTCCCCGGCCCAGGACGAGGATGAACAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACAGGCGAGGCACAAAGTCGCAACTGAACTTTTTAGAAACATTATTTGTGTGTGTATGTGTGTAGCAGGGGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AATGAGCTGATGCCGAGGGTCCAGCCACCCCGCCTCTGCCTCCTCCTCCCCCTGCCGCCGCTGCCCTCGCAGAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGCGCGCACACACGGCACTTGGGCCGGGTTTCCGCGCTCCGTCCCCCCGTTTGGATGGGGGTTTTCATTTCCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGGAGGCACAGCCCGCGGAGCGCTCTGAAGGGCTGGAGCCCCAAGTTACTCCTCGCCAGCGCCGGCCGCCCGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTCACTCGCGCTGGCCGGCCGGGGGAAGGGACCCGCACGCCGGGCTTTGTTGTGGAAATCCCGGTTACCTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTATAACCCACACCATGGATAACTTATTGGACTTTGCCTGAAAGGAGTCATTAGTGACATTGGATATTTGACCG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTTGGCCACAGGTTTTTCAGAATGAATGGAAGATCATGCAGCATGAGTCTCCACCGGACATCGGGAACCCCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGGGCCTAGGATGGTCAGTGGTCATCACATTCCTGCCATCCGAGCCCACTCCGGGACTCCTGGCCCCTCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTGGCAGCACATCGAGTCCCACTATGGCAAGCCTTGCTAACAACCTCCATCTCAAGATGCCCTCAGGAGGAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATGGCTCCTCAGAACAACGTGGCTGAGAGCCGCATCCATCTGCCTGCCTTAAGCCCCAGGAGACAAATGCTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCAATGGGAAGCCGCGATTCCAGGTCACCCAGGCTGGAGGCATGTCAGGGTCACATACTTTAAAGCCAAAGCAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGGAGTTTGGAAGCCCTTTTCCTCCAAATCCTGGGAAAGGGGCTCTTGGCTTTGGGCCTCAGTGCAAGTCCAT 1184
Query 1 -------------------------------------------ATGATGGTTCAGCGACTGGGACTCATTTCAC 31
|||||||||||||||||||||||||||||||
Sbjct 1185 TGGAAAAGGCAGCTGCAACAATCTAGTGGTCACCAGCAGTCCCATGATGGTTCAGCGACTGGGACTCATTTCAC 1258
Query 32 CTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCCTAGCTTACAGAGGGCAATGAATGCAGCCAAC 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTCCAGCAAGCCAGGTCTCTACAGCATGCAACCAGATCAGTCCTAGCTTACAGAGGGCAATGAATGCAGCCAAC 1332
Query 106 CTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTGAGTCTTTGGCGTCCACGACCTTGAGTCTGAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTGAATATACCTCCTTCAGATACCAGGTCCCTTATTTCGCGTGAGTCTTTGGCGTCCACGACCTTGAGTCTGAC 1406
Query 180 GGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAGGGCTACAGGGCCCTCCCTTCGCTCTCCAACC 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGAAAGTCAGTCGGCCTCAAGCATGAAGCAGGAGTGGTCCCAGGGCTACAGGGCCCTCCCTTCGCTCTCCAACC 1480
Query 254 ACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCTTCCTCCCGGGACATCCATGTCCAGCAATAGT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ACGGCTCTCAGAATGGCCTTGATCTAGGGGATCTCCTTAGCCTTCCTCCCGGGACATCCATGTCCAGCAATAGT 1554
Query 328 GTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTAGCCACTCTCCTTACCCTAGTCCTCGGCACTC 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTCTCTAACTCATTACCATCCTACCTTTTTGGCACGGAAAGTAGCCACTCTCCTTACCCTAGTCCTCGGCACTC 1628
Query 402 ATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTGTCCTTGTCCCCGCTGTCCGATGGCATCGGGA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ATCCACCAGGTCCCACTCGGCCCGCTCCAAGAAGAGAGCGCTGTCCTTGTCCCCGCTGTCCGATGGCATCGGGA 1702
Query 476 TAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTTGGTGGCCTACATCAACGGGTCGAGGGCTTCGCCG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TAGATTTCAATACCATCATCCGCACGTCGCCCACGTCCTTGGTGGCCTACATCAACGGGTCGAGGGCTTCGCCG 1776
Query 550 GCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCATTTCCTGGGCGTGCGCGGCAGCTGCATTCCCCAGCCGCG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GCCAACCTGTCCCCGCAGCCGGAGGTCTACGGGCATTTCCTGGGCGTGCGCGGCAGCTGCATTCCCCAGCCGCG 1850
Query 624 CCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGGTGGCCCCTGGAGGCCTGGCGCTGCCGGCCTACGGCGAGGACG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CCCGGTGCCCGGCAGCCAGAAGGGCGTGCTGGTGGCCCCTGGAGGCCTGGCGCTGCCGGCCTACGGCGAGGACG 1924
Query 698 GGGCCCTGGAGCACGAGCGCATGCAACAGCTGGAGCACGGCGGCCTGCAGCCAGGCCTGGTCAACCACATGGTG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GGGCCCTGGAGCACGAGCGCATGCAACAGCTGGAGCACGGCGGCCTGCAGCCAGGCCTGGTCAACCACATGGTG 1998
Query 772 GTGCAGCATGGCCTGCCGGGCCCCGACAGCCAGCCGGCCGGCCTGTTCAAGACCGAACGCCTGGAGGAGTTCCC 845
|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTGCAGCATGGCCTGCCGGGCCCCGACAGCCAGTCGGCCGGCCTGTTCAAGACCGAACGCCTGGAGGAGTTCCC 2072
Query 846 GGGCAGCACCGTAGACCTACCCCCCGCGCCTCCGCTCCCTCCTCTGCCGCCGCCCCAAGGCCCCCCACCCCCTT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2073 GGGCAGCACCGTAGACCTACCCCCCGCGCCTCCGCTCCCTCCTCTGCCGCCGCCCCCAGGCCCCCCACCCCCTT 2146
Query 920 ACCATGCCCATGCGCACCTTCACCACCCGGAGCTCGGGCCCCACGCCCAGCAGCTGGCCTTGCCCCAGGCCACC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ACCATGCCCATGCGCACCTTCACCACCCGGAGCTCGGGCCCCACGCCCAGCAGCTGGCCTTGCCCCAGGCCACC 2220
Query 994 CTGGACGACGACGGGGAGATGGACGGCATCGGGGGCAAGCATTGCTACCGCTGGATCGACTGCAGCGCCCTGTA 1067
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 2221 CTGGACGACGACGGGGAGATGGACGGCATCGGGGGCAAGCATTGCTGCCGCTGGATCGACTGCAGCGCCCTGTA 2294
Query 1068 CGACCAGCAGGAGGAGCTCGTGCGGCACATCGAGAAGGTCCACATCGACCAGCGCAAAGGGGAGGACTTCACTT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CGACCAGCAGGAGGAGCTCGTGCGGCACATCGAGAAGGTCCACATCGACCAGCGCAAAGGGGAGGACTTCACTT 2368
Query 1142 GCTTCTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAACGCCCGCTATAAACTGCTGATCCACATGAGAGTC 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 GCTTCTGGGCCGGTTGCCCTCGAAGATACAAGCCCTTCAACGCCCGCTATAAACTGCTGATCCACATGAGAGTC 2442
Query 1216 CACTCTGGGGAGAAGCCCAACAAGTGTACG-----TTTGAAGGTTGCGAGAAGGCCTTTTCAAG-GCTTGAA-- 1281
|||||||||||||||||||||||||||||| ||| |||||.|| ||||||.| ||||.||
Sbjct 2443 CACTCTGGGGAGAAGCCCAACAAGTGTACGGTATTTTT---GGTTGAGA-------TTTTCACGTGCTTAAAGC 2506
Query 1282 -----AATCTCAAG-ATCCACTTGCGGAGCCACACAGGCGA----GAAGCCGTATTTGTGCCAGCATCCGGGTT 1345
|.|...||| ||||| |||| ||||..|| |||| |.||
Sbjct 2507 CATTGATTGGGAAGCATCCA----CGGA-----ACAGATGATCTGGAAG----------------AACC----- 2550
Query 1346 GTCAGAAGGCCTTCAG-TAACTCCAGTGACCGCGCCAAACACCAGCGGACGCATCTGGACACCAAACCTTATGC 1418
|||| .||||| ||..|.||| |.|.|||
Sbjct 2551 --CAGA----GTTCAGATATTTGCAG------------------------GAAACTG----------------- 2577
Query 1419 TTGTCAAATT---CCAGGATGTACCAAACGCTACACA-GACCCAAGTTCCCTAAGAAAGCATGTGAAGGCACAT 1488
|||| |.|||||| | || ||.|||||| .|||| .||.
Sbjct 2578 ------AATTCAACGAGGATG---------------ATGA------------AAAAAAGCA-ATGAA---TCAC 2614
Query 1489 TCTTCCAAAGAGCAACA-AGCAAGGAAAAAGTT-GCGGTCCAGCACAGAGCTCCATCCAGACCTGCTCACAGAT 1560
|||| ||||.|.|.| ||| ||.||| || .||.|.||..|||.||.| ||||| ||| ||
Sbjct 2615 TCTT---AAGAACTAGACAGC-AGCAAA---TTATCGATTCAATACACAGTT-------GACCT----ACA-AT 2669
Query 1561 TGCCTCACCGTGCAGTCCCTGCAGCCGGCCACTTCCCCTAGAGAT-------------GCTGC---------TG 1612
|.| .||||..|| ||||| ||.|| ||
Sbjct 2670 TCC--------ACAGTTTCT--------------------GAGATGAGGTATTATAAGGCAGCATAGCATAGTG 2715
Query 1613 CTGAAGGGACCGTGGGACGCTCCCCTGGACCCGG---GCCTGACCTCTATTCA----GCTCCCATTTTCTCCAG 1679
.|.|| ||.||||| .|.|||||.||.| |||||...|..|.||| .||.|||.||
Sbjct 2716 ATTAA--GAGCGTGG------ACTCTGGAGCCAGACTGCCTGGATTTAAATCATGACTCTGCCACTT------- 2774
Query 1680 CAATTATTCAAGCCGAAGTGGAACA-GCTGCTGGGGCC-----------GTACCAC------CCCCA------- 1728
||| |||| ||.|||| .|.|||| ||.||
Sbjct 2775 ----------------------ACAGGCTG-TGAGGCCAGCATGTTACTTTTCCACTTAGTACCTCATTTTTCT 2825
Query 1729 CATCCTGTCAGTCACCCTTCTCCAGGACA---TAATGTACAGGGGAGC-----CCTCACAACCCC----TCCTC 1790
||| ||||.|.| .||||.| .|||.||||.|...|| ||.||.|||..| |..||
Sbjct 2826 CAT-CTGTAAAT----------GAGGATAATTAAATATACATGCAGGCATGTGCCACATAACAACATGTTGGTC 2888
Query 1791 CCA-----GTTACCTCCACTCACAGCTGTGGACGC------------AGGAGCTGAGAGGTT----TGCACCTT 1843
..| |.||..|.|||..|||.|.||||.|.| |||||||||.|..|| | |||||.
Sbjct 2889 AAAGAGTGGCTATGTACACATACAACAGTGGCCCCATAAGATTATAAAGGAGCTGAAAAATTCCTAT-CACCTA 2961
Query 1844 CTG-CTCCATCTCCTCA--CCACATCAGCCCCCGGAGAGTTCCAGCTCCTTCTTCA--------------ATAC 1900
||| |..||| |.||.| .||||||| .|||| ||..||.||.|||| ||.|
Sbjct 2962 CTGACGTCAT-TGCTAATGTCACATCA-----TGGAG-----CAATTCATTATTCACGTGCATGGGGGTGATTC 3024
Query 1901 TGCAAAGAACACAGCCTCCCTATACCCAGCAGCCATCAGGTTCACACCTGAAGTC-CTATCAGCCAG----AAA 1969
||....|||||.| ||||| ||| || ||||| |.|
Sbjct 3025 TGGTGTGAACAAA-----CCTAT-----------------------------GTCACT----GCCAGTTGTATA 3060
Query 1970 CAAACTCTTCTTTTCAACCAAATGGTATCCATGTCCATGGATTTTATGGGCAGCTGCAGAAGTTCTGTCCCCCA 2043
.||| |.||.||.|| ||.| |||||..||| |.||
Sbjct 3061 AAAA---------TAAAGCACAT-------------ATAG---TTATGTACAG-----------------CACA 3092
Query 2044 CACTACCCCGATTCCCAGAGAAT-----TGTGCCGCCTGTCAGCTCCTGCAGTGTGGTGCCTTCGTTTGAGGAC 2112
.|.||| || ||.||| |.|| ||| |||.|| |||..|.|.
Sbjct 3093 TAATAC-----TT----GATAATAAAAATCTG-----TGT-------TGCTGT------------TTTATGTAT 3133
Query 2113 TGCCTAGTCCCTAC-ATCCATGGGCCAGGCCAGTTTTGA----TGTTTTCCACAGAG------CCTTCTCGACT 2175
|..||| ||| ||.| ||||| | |.|||| |||| ||||||
Sbjct 3134 TTACTA-----TACTATAC-------------GTTTT-ATTATTATTTT----AGAGTGCTTTCCTTCT----- 3179
Query 2176 CACTCGGGCATTACAGTGTAT----GATTTACCTTCAAGTT-------CCTCGAGCCTC--TTTGGGGAGTCTC 2236
||.||| || ||||| | |||||| .||| |
Sbjct 3180 ---------------GTTTATAAAAGA---------AAGTTAATAAAAC----AGCCTCAGGTTG--------C 3217
Query 2237 TCCG-CAGCGGGG-----CTGAAGA------TGCTACCTTCTTGCAGATCAGCACCGTGGACCGCTGTCCTAGC 2298
|||| || .|.|| |..|||| ||.|| ||.|.|.|||| |||.||| |
Sbjct 3218 TCCGTCA-AGAGGTATTTCAAAAGAAAGCATTGTTA--TTATGGGAGAT----------GACAGCT-------C 3271
Query 2299 CA-GCTCTCCTCTGT--CTGCACC-GAAGGC---------------------------------- 2325
|| ||| ||| ||||.|| ||||.|
Sbjct 3272 CAGGCT------TGTTACTGCCCCTGAAGACCCTCCAGTGGGATGAGATGTGGAGGTGGAAGACA 3330
