Nucleotide Global Alignment
Description
- Query:
- TRCN0000469005
- Subject:
- XM_024451739.1
- Aligned Length:
- 2365
- Identities:
- 1426
- Gaps:
- 605
Alignment
Query 1 ATGACATCGACGGGGAAGGACGGCGGCGCGCAGCACGCGCAGTATGTTGGGCCCTACCGGCTGGAGAAGACGCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGGCAAGGGGCAGACAGGTCTGGTGAAGCTGGGGGTTCACTGCGTCACCTGCCAGAAGGTGGCCATCAAGATCG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCAACCGTGAGAAGCTCAGCGAGTCGGTGCTGATGAAGGTGGAGCGGGAGATCGCGATCCTGAAGCTCATTGAG 222
|||||||||||||||||||||||.||||||||||||||.||.
Sbjct 1 --------------------------------ATGAAGGTGGAGCGGGAGATCGCCATCCTGAAGCTCATCGAA 42
Query 223 CACCCCCACGTCCTAAAGCTGCACGACGTTTATGAAAACAAAAAATATTTGTACCTGGTGCTAGAACACGTGTC 296
|||||.||.|||||.|||||.||||||||.||.||.|||||.|||||||||||||||||.||.||.|||||.||
Sbjct 43 CACCCACATGTCCTCAAGCTCCACGACGTCTACGAGAACAAGAAATATTTGTACCTGGTTCTGGAGCACGTCTC 116
Query 297 AGGTGGTGAGCTCTTCGACTACCTGGTGAAGAAGGGGAGGCTGACGCCTAAGGAGGCTCGGAAGTTCTTCCGGC 370
.||.||||||||.||||||||||||||.|||||||||||.||||||||.||||||||.||.|||||||||||.|
Sbjct 117 GGGGGGTGAGCTATTCGACTACCTGGTAAAGAAGGGGAGACTGACGCCCAAGGAGGCCCGAAAGTTCTTCCGCC 190
Query 371 AGATCATCTCTGCGCTGGACTTCTGCCACAGCCACTCCATATGCCACAGGGATCTGAAACCTGAAAACCTCCTG 444
||||..|.||||||||||||||||||||||||.|||||||.||||||||.||.||.||.||.||.|||||.||.
Sbjct 191 AGATTGTGTCTGCGCTGGACTTCTGCCACAGCTACTCCATCTGCCACAGAGACCTAAAGCCCGAGAACCTGCTT 264
Query 445 CTGGACGAGAAGAACAACATCCGCATCGCAGACTTTGGCATGGCGTCCCTGCAGGTTGGCGACAGCCTGTTGGA 518
.||||.|||||.||||||||||||||.||||||||.||||||||||||||||||||.||.||||||||..||||
Sbjct 265 TTGGATGAGAAAAACAACATCCGCATTGCAGACTTCGGCATGGCGTCCCTGCAGGTGGGGGACAGCCTCCTGGA 338
Query 519 GACCAGCTGTGGGTCCCCCCACTACGCCTGCCCCGAGGTGATCCGGGGGGAGAAGTATGACGGCCGGAAGGCGG 592
|||||||||.|||||||||||.||.||.||.||.||||||||...||||||.||.|||||.|||||...|||.|
Sbjct 339 GACCAGCTGCGGGTCCCCCCATTATGCGTGTCCAGAGGTGATTAAGGGGGAAAAATATGATGGCCGCCGGGCAG 412
Query 593 ACGTGTGGAGCTGCGGCGTCATCCTGTTCGCCTTGCTGGTGGGGGCTCTGCCCTTCGACGATGACAACTTGCGA 666
||.||||||||||.||.||||||||.||||||.||||.|||||||||||||||||.||.||.||||||.|.||.
Sbjct 413 ACATGTGGAGCTGTGGAGTCATCCTCTTCGCCCTGCTCGTGGGGGCTCTGCCCTTTGATGACGACAACCTCCGC 486
Query 667 CAGCTGCTGGAGAAGGTGAAGCGGGGCGTGTTCCACATGCCGCACTTTATCCCGCCCGACTGCCAGAGTCTGCT 740
||||||||||||||||||||.||||||||.|||||||||||.|||||.||.||.||.||.||||||||.||.||
Sbjct 487 CAGCTGCTGGAGAAGGTGAAACGGGGCGTCTTCCACATGCCCCACTTCATTCCTCCAGATTGCCAGAGCCTCCT 560
Query 741 -ACGGGCATGATCGAGGTGGACGCGGCACG------CGCTCACGCTAGAGCACATTCAGACCACAT--ATGGTA 805
|.|||.||||||||.||||| ||.|| .|||||..||.|||||.||||||| .|||| .|||||
Sbjct 561 GAGGGGAATGATCGAAGTGGA----GCCCGAAAAAAGGCTCAGTCTGGAGCAAATTCAGA-AACATCCTTGGTA 629
Query 806 TATAGGGGGCAAGAATGAGCCCGAACC------AGAG-CAGCCCATTCCTCGCAAGG------TGCAGATCCGC 866
..||||.||.||..|.|||||.||.|| .||| ||||||.|..| |||..|| |||.||.|
Sbjct 630 CCTAGGCGGGAAACACGAGCCAGACCCGTGCCTGGAGCCAGCCCCTGGC-CGCCGGGTAGCCATGCGGAGC--- 699
Query 867 TCGCTGC---CCAGCCTGGAGGACATCGACCCCGACGTGCTGGACAGCAT-GCACTCACTGGGCTGCTTCCGAG 936
|||| |||.| ||| ||..|.|||||||||||.||.||.||||| ||| |||||||||||||||.|.|
Sbjct 700 ---CTGCCATCCAAC--GGA-GAGCTGGACCCCGACGTCCTAGAGAGCATGGCA-TCACTGGGCTGCTTCAGGG 766
Query 937 ACCGCAACAAGCTGCTGCAGGACCT--GCTGTCCGAGGAGGAGAACCAGGAGAAGATGATTTACTTCCTCCTCC 1008
|||||.|.|.|||||..|..||.|| ||.|| ||||||||||||||.||.||||||||.||.|..||.||..
Sbjct 767 ACCGCGAGAGGCTGCATCGCGAGCTGCGCAGT--GAGGAGGAGAACCAAGAAAAGATGATATATTATCTGCTTT 838
Query 1009 TGGACCGGAAAGAAAGGTACCCGAGCCAGGAGGATGAGGACCTGCCCCCCCGGAACGAGATAGACCCTCCCCGG 1082
||||.|||||.||..||||.||.|||...|||||..||||||||||.||||||||.||..|.|||||.||||||
Sbjct 839 TGGATCGGAAGGAGCGGTATCCCAGCTGTGAGGACCAGGACCTGCCTCCCCGGAATGATGTTGACCCCCCCCGG 912
Query 1083 AAGCGTGTGGACTCCCCGATGCTGAACCGGCACGGCAAGCGGCGGCCAGAACGCAAATCCATGGAGGTGCTCAG 1156
|||||||||||.||.||.|||||||.|||.|||||.||||||||.|||||.||.||.||||||||.||.||.||
Sbjct 913 AAGCGTGTGGATTCTCCCATGCTGAGCCGTCACGGGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAG 986
Query 1157 CGTGAC---------GGACGGCGGCTCCCCGGTGCTTGCGCG--GGGCC-----CATCCCCCAATTTACGCA-A 1213
|.|.|| ||..||.||||||||.||.|...|.|| ||||| .||..|||| ||| |
Sbjct 987 CATCACCGATGCCGGGGGTGGTGGCTCCCCTGTACCCACCCGACGGGCCTTGGAGATGGCCCA------GCACA 1054
Query 1214 GGAAGAAA---------GTTTTT-----------GGGT---TCCT---------TA--------AAGGGGGC-- 1245
|..|||.| ||...| |||| |||| || ||||.|.|
Sbjct 1055 GCCAGAGATCCCGTAGCGTCAGTGGAGCCTCCACGGGTCTGTCCTCCAGCCCTCTAAGCAGCCCAAGGAGTCCG 1128
Query 1246 -----TTCCT-------------------------TGAGGCT-------------------TTTCCCA---CCA 1267
||||| ||||||| .||||.| .||
Sbjct 1129 GTCTTTTCCTTTTCACCGGAGCCGGGGGCTGGAGATGAGGCTCGAGGCGGGGGCTCCCCGACTTCCAAAACGCA 1202
Query 1268 GCC----CCATCCAGGAGGCCCCCG----GGGGGCCCC------CTTAACCCCTTCCACCAAG-GGCCATTCC- 1325
|.| ||.||..|| ||||||.| ||||||.|| | |.||||..||.||.|| |.||..|||
Sbjct 1203 GACGCTGCCTTCTCGG-GGCCCCAGGGGTGGGGGCGCCGGGGAGC--AGCCCCCGCCCCCCAGTGCCCGCTCCA 1273
Query 1326 --CCCCTCCCC--CCCCCC-----CCCC------------AGGGA------------CACCTGTCCACACGCCA 1366
|||||.||| |||||| |||| .|||| |.|||.|.|||||||
Sbjct 1274 CACCCCTGCCCGGCCCCCCAGGCTCCCCGCGCTCCTCTGGCGGGACCCCCTTGCACTCGCCTCTGCACACGC-- 1345
Query 1367 AAGGAGAGCCCGGCTGGCACGCCCA-----ACCCC-----CAAGGCCCCCGTCCAGCCCC------AGCGTCGG 1424
||||| |.||..|||| ||||| |||..||.||..|||||||| .||||||
Sbjct 1346 --------CCCGG--GCCAGTCCCACCGGGACCCCGGGGACAACACCACCCCCCAGCCCCGGCGGTGGCGTCG- 1408
Query 1425 AGGGGTGC--CCTGGAGGGCGCGGCTCAACTCCATCAAGAACAGCTTTCTGGGCTCACCCCGCTTCCACCGCCG 1496
||||.|| ||||||||...||.||||||||||||...||||||||.||||||||.||.|||||.|||||.||
Sbjct 1409 -GGGGAGCCGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAGCTTCCTGGGCTCCCCTCGCTTTCACCGGCG 1481
Query 1497 GAAACTGCAAGTTCCGACGCCGGAGGAGATGTCCAACCTGACACCAGAGTCGTCCCCAGAGCTGGCGAAGAAG- 1569
.||..||||.||.||.||..|.|||||||||||||.|.||||.||||||||.|||||.|||||||| ||.|.|
Sbjct 1482 CAAGATGCAGGTCCCTACCGCTGAGGAGATGTCCAGCTTGACGCCAGAGTCCTCCCCGGAGCTGGC-AAAACGC 1554
Query 1570 TCCTGGTTTGGGAACTTCATCAGCCTGGAGAAGGAGGAGCAGATCTTCGTGGTCATCAAAGACAAACCTCTGAG 1643
||||||||.||||||||||||..|.||||.||.||.||.||.||.|||.|.||..|.||.|||||||||||.||
Sbjct 1555 TCCTGGTTCGGGAACTTCATCTCCTTGGACAAAGAAGAACAAATATTCCTCGTGCTAAAGGACAAACCTCTCAG 1628
Query 1644 CTCCATCAAGGCTGACATCGTGCACGCCTTCCTGTCGATTCCCAGTCTCAGCCACAGCGTCATCTCCCAAACGA 1717
|..||||||.||.||||||||.||.|||||.||||||||.|||||.||.||.|||||.||..|.||.||.||.|
Sbjct 1629 CAGCATCAAAGCAGACATCGTCCATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTGTGCTGTCACAGACCA 1702
Query 1718 GCTTCCGGGCCGAGTACAAGGCCACGGGGGGGCCAGCCGTGTTCCAGAAGCCGGTCAAGTTCCAGGTTGATATC 1791
|||||.||||||||||||||||||..||.||.||..||||.|||||.|||||.|||...||||||||.||.|||
Sbjct 1703 GCTTCAGGGCCGAGTACAAGGCCAGTGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATC 1776
Query 1792 ACCTACACGGAGGGT-------------------GGGGAGGC-GCAGAAGGAGAACGGCATCTACTCCGTCACC 1845
|.||.|.|.|||||| |||..||| ||.||.|..| .||||||||||||||||||
Sbjct 1777 AGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGACGGGACGGCAGCGGAGGTGG--TGGCATCTACTCCGTCACC 1848
Query 1846 TTCACCCTGCTCTCAGGCCCCAGCCGTCGCTTCAAGAGGGTGGTGGAGACCATCCAGGCCCAGCTGCTGAGCAC 1919
|||||.||..||||.||.|||||||||||.||||||.|.||||||||||||||||||||.|||||.||||||||
Sbjct 1849 TTCACTCTCATCTCGGGTCCCAGCCGTCGGTTCAAGCGAGTGGTGGAGACCATCCAGGCACAGCTCCTGAGCAC 1922
Query 1920 ACACGACCCGCC-----TGC-GGCCCAGCACTTGTCAGACACCACTAACTGTATGGAAATGATGACGGGG---- 1983
.||.||||.||| ||| ||||| ||.||||| ||.|.|| ||||||
Sbjct 1923 TCATGACCAGCCCTCCGTGCAGGCCC------TGGCAGAC---------------GAGAAGA--ACGGGGCCCA 1973
Query 1984 ----CGGCTTTCCAAATGTGGAATT-----ATCCCGAAAAGT-------------------------------- 2016
||||.|.| ||| | |.||||||...|
Sbjct 1974 GACCCGGCCTGC------TGG---TGCCCCACCCCGAAGCCTGCAGCCCCCACCCGGCCGCCCAGACCCAGAGC 2038
Query 2017 ----------------------------------------------------------------------- 2016
Sbjct 2039 TGAGCAGCTCTCCCCGCCGAGGCCCCCCCAAGGACAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGCCC 2109
