Nucleotide Global Alignment

Description

Query:
TRCN0000469079
Subject:
XR_001737469.1
Aligned Length:
3922
Identities:
1684
Gaps:
2165

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGC  74

Query    1  --------------------------------------------------------ATGTCGTGGCTCTTCGGC  18
                                                                    ||||||||||||||||||
Sbjct   75  CCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGC  148

Query   19  ATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG  92
            .||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG  222

Query   93  CGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG  166
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG  296

Query  167  AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGGACGCCCTGAATCTGGCACAGATG  240
            |||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||
Sbjct  297  AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATG  370

Query  241  CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAA--------------------------------  282
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct  371  CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGCTGGAGTGCAATGGCGCAATCTCGGCTCACT  444

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  445  GCAACCTCCGCCTCCCGGGTTCAAGCGATTCATCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACGCGC  518

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  519  CACCACGCCTGGCTAATGTTGTATTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCTAACTCC  592

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  593  CGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAACTGCTGGGATTACAGGCACGCGCCACCACGCCTGGCCT  666

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  667  ATTTTATTTTATTTTGAGACAGAGTGTCACTCTGTCCCCCAGTCTGGCGTGCAATGGTTTGATCTCGGCTCACT  740

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  741  GCAACCTCCACCTCCCGGGTTCAACCTCCTGCCTCAGCCTTCCGAGCAGCTGGGACTACAGGAGCCTGCCACCA  814

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  815  CATCTGGCGAATTTTTGTATTTTTAGTAGAGAAGGGGGTTCAGCATGTTGTCCAGGTTGGTCTTGAACTCCTGA  888

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  889  CCTCAGGTGATCCAGCCACTTTGGCCTCACAAAGTGCTGGGATTATAGGCAAGAGCGATGGCGCCCGGCCCACT  962

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  963  CAGCAGGATTCCTAGAATGGGCACGAGCTCTGCCCTCATCACAGTCCAAAAGTGAGCACCTGCCTGGAGCTGCC  1036

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1037  CAGAAACAGCCTTGTGGGGTGGGGTTGGTGTCTGACCTCCCTCCCCGGGGGCCTTCGCAGGCTTCTCTGCTGGT  1110

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1111  GCTTCTGTGCCTGTGGGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCAGCTGGAAGCCCTGAACCT  1184

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1185  GCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCAGACACAGGAGCGGCTGTCAGGCA  1258

Query  283  -----------------------------------------------GAGTATGAGGCCGCCGTGGAGCAGCTC  309
                                                           |||||||||||||||||||||||||||
Sbjct 1259  GTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC  1332

Query  310  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC  1406

Query  384  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG  457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG  1480

Query  458  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG  1554

Query  532  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  605
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1555  ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA  1628

Query  606  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  679
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1629  GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA  1702

Query  680  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCACGGTG  753
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1703  GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG  1776

Query  754  GCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTGTCGCCGGCCGCTTCATCG  826
            |||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|||.|.|||||||||||||
Sbjct 1777  GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CGTCACTGGCCGCTTCATCG  1849

Query  827  AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCC  900
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1850  AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCC  1923

Query  901  ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGTGCTCAGTCCCAGCCTGGA  974
            ||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.||||||||||||||
Sbjct 1924  ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGA  1997

Query  975  AGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACATCCTGA  1048
            ||||||||||||||||||||||||||||||.||||||||||||||||||||..|||||||||||.||||||||.
Sbjct 1998  AGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGC  2071

Query 1049  TGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC  1122
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072  TGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC  2145

Query 1123  ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC  1196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146  ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC  2219

Query 1197  CAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACCGAGA  1270
            ||||||||||||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||.|||.
Sbjct 2220  CAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGG  2293

Query 1271  AGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA-------  1337
            ||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.|||||||||||       
Sbjct 2294  AGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAACCCCAGT  2367

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2368  CACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTTGGGCTCCTGGGTC  2441

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2442  AGCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGCTGGGGCCCTGCTG  2515

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2516  AGCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGACAGGGACTCTGGG  2589

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2590  TCCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGGCACTGCCTATCAG  2663

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2664  GCTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGGGCGGGGGGCAGCT  2737

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2738  GGGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCCTGTGCTCACAAGC  2811

Query 1338  --------------------------------------------------------------------------  1337
                                                                                      
Sbjct 2812  TGCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTCGGGGCATCTCAGC  2885

Query 1338  ----------------------------------------GTTCATGCTGGTCCTGGCCAGCAACCAACCAGAG  1371
                                                    .|||||||||||||||||||||||.|..||.|||
Sbjct 2886  TGGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAG  2959

Query 1372  CAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGA  1445
            |||||||||||.||||||||...||||||..|.|.|||||||||||||||||||||...|||||||||.|||||
Sbjct 2960  CAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGA  3033

Query 1446  GCGCCTGGTGAGAATGTATTTTGACAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGG  1519
            |||||||||||||.||.||||||||||.|.|||||||||||||||||||||||||||.|.||||||||||||||
Sbjct 3034  GCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGG  3107

Query 1520  CCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCT  1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3108  CCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCT  3181

Query 1594  CAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACAC  1667
            |||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||.|||||||||||||||.|
Sbjct 3182  CAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGC  3255

Query 1668  CCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGG  1741
            |.|.|||||||||||||||||||||.|||..|||||||||.||||||||||||||||.|||||||||||.||||
Sbjct 3256  CTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGG  3329

Query 1742  ACGAGCCCTCCCCATCC---------------------------------------------------------  1758
            .|||||.|.|||.||||                                                         
Sbjct 3330  TCGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCC  3403

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3404  TGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCC  3477

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3478  CAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGG  3551

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3552  GGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGA  3625

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3626  GGCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTG  3699

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3700  GGGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAA  3773

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3774  GTGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCC  3847

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3848  TGTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCAC  3921

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