Construct: ORF TRCN0000469079
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016453.1_s317c1
- Derived from:
- ccsbBroadEn_15089
- DNA Barcode:
- GCACCGATTGGCAATGTGGAATAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD3A (55210)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469079
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170535.3 | 99.8% | 99.8% | 44G>A;108G>C |
| 2 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_005244806.3 | 95.9% | 93.5% | (many diffs) |
| 3 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XM_024448098.1 | 95.6% | 95.4% | 44G>A;108G>C;1338_1415del |
| 4 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_018188.5 | 92.3% | 92.2% | 44G>A;108G>C;283_426del |
| 5 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_031921.6 | 86.5% | 84.5% | (many diffs) |
| 6 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170536.2 | 86.5% | 86.5% | 0_1ins237 |
| 7 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542244.1 | 80.6% | 78.7% | (many diffs) |
| 8 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542241.3 | 78.7% | 73.7% | (many diffs) |
| 9 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_001317238.2 | 76.6% | 69.2% | (many diffs) |
| 10 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_001737282.1 | 68.1% | (many diffs) | |
| 11 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_946776.2 | 66% | (many diffs) | |
| 12 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_002956997.1 | 66% | (many diffs) | |
| 13 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737470.1 | 65.8% | (many diffs) | |
| 14 | human | 219293 | ATAD3C | ATPase family AAA domain co... | NM_001039211.3 | 65.7% | 62% | (many diffs) |
| 15 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_241045.2 | 64.6% | (many diffs) | |
| 16 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737468.1 | 55.1% | (many diffs) | |
| 17 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_002957738.1 | 49% | (many diffs) | |
| 18 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737469.1 | 42.9% | (many diffs) | |
| 19 | mouse | 108888 | Atad3a | ATPase family, AAA domain c... | NM_179203.3 | 82.2% | 91% | (many diffs) |
| 20 | mouse | 108888 | Atad3a | ATPase family, AAA domain c... | XM_006538467.3 | 75.7% | 79.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1824
- ORF length:
- 1758
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc gtggctcttc ggcattaaca agggccccaa gggtgaagac gcggggccgc 121 cgccgccttt gccgcccgcg cagcccgggg ccgagggcgg cggggaccgc ggcttgggag 181 accggccggc gcccaaggac aaatggagca acttcgaccc caccggcctg gagcgcgccg 241 ccaaggcggc gcgcgagctg gagcactcgc gttatgccaa ggacgccctg aatctggcac 301 agatgcagga gcagacgctg cagttggagc aacagtccaa gctcaaagag tatgaggccg 361 ccgtggagca gctcaagagc gagcagatcc gggcgcaggc tgaggagagg aggaagaccc 421 tgagcgagga gacccggcag caccaggcca gggcccagta tcaagacaag ctggcccggc 481 agcgctacga ggaccaactg aagcagcagc aacttctcaa tgaggagaat ttacggaagc 541 aggaggagtc cgtgcagaag caggaagcca tgcggcgagc caccgtggag cgggagatgg 601 agctgcggca caagaatgag atgctgcgag tggaggccga ggcccgggcg cgcgccaagg 661 ccgagcggga gaatgcagac atcatccgcg agcagatccg cctgaaggcg gccgagcacc 721 gtcagaccgt cttggagtcc atcaggacgg ctggcacctt gtttggggaa ggattccgtg 781 cctttgtgac agactgggac aaagtgacag ccacggtggc tgggctgacg ctgctggctg 841 ttggggtcta ctcagccaag aatgccacgc ttgtcgccgg ccgcttcatc gaggctcggc 901 tggggaagcc gtccctagtg agggagacgt cccgcatcac ggtgcttgag gcgctgcggc 961 accccatcca ggtcagccgg cggctcctca gtcgacccca ggacgcgctg gagggtgttg 1021 tgctcagtcc cagcctggaa gcacgggtgc gcgacatcgc catagcaaca aggaacacca 1081 agaagaaccg cagcctgtac aggaacatcc tgatgtacgg gccaccaggc accgggaaga 1141 cgctgtttgc caagaaactc gccctgcact caggcatgga ctacgccatc atgacaggcg 1201 gggacgtggc ccccatgggg cgggaaggcg tgaccgccat gcacaagctc tttgactggg 1261 ccaataccag ccggcgcggc ctcctgctct ttgtggatga agcggacgcc ttccttcgga 1321 agcgagccac cgagaagata agcgaggacc TCAGGGCCAC ACTGAACGCC TTCCTGTACC 1381 GCACGGGCCA GCACAGCAAC AAGTTCATGC TGGTCCTGGC CAGCAACCAA CCAGAGCAGT 1441 TCGACTGGGC CATCAATGAC CGCATCAATG AGATGGTCCA CTTCGACCTG CCAGGGCAGG 1501 AGGAACGGGA GCGCCTGGTG AGAATGTATT TTGACAAGTA TGTTCTTAAG CCGGCCACAG 1561 AAGGAAAGCA GCGCCTGAAG CTGGCCCAGT TTGACTACGG GAGGAAGTGC TCGGAGGTCG 1621 CTCGGCTGAC GGAGGGCATG TCGGGCCGGG AGATCGCTCA GCTGGCCGTG TCCTGGCAGG 1681 CCACGGCGTA TGCCTCCGAG GACGGGGTCC TGACCGAGGC CATGATGGAC ACCCGCGTGC 1741 AAGATGCTGT CCAGCAGCAC CAGCAGAAGA TGTGCTGGCT GAAGGCGGAA GGGCCTGGGC 1801 GTGGGGACGA GCCCTCCCCA TCCTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1861 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1921 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CACCGATTGG 1981 CAATGTGGAA TACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 2041 att