Nucleotide Global Alignment

Description

• Query: TRCN0000469079
• Subject: XR_002957738.1
• Aligned Length: 3417
• Identities: 1676
• Gaps: 1660

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGCATTTCCGTCGCCGGGAGGAAGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGAGGCTGCTCCCAGCCGCGCCCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTG  148

Query    1  -----ATGTCGTGGCTCTTCGGCATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCG  69
                 ||||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  149  CGAGCATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCG  222

Query   70  CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG  143
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  223  CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG  296

Query  144  CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGG  217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  297  CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGG  370

Query  218  ACGCCCTGAATCTGGCACAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG  291
            |.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG  444

Query  292  GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA  518

Query  366  GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC  592

Query  440  AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA  666

Query  514  GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCG  587
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  667  GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCG  740

Query  588  CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGA  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  741  CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGA  814

Query  662  CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGAC  735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  815  CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGAC  888

Query  736  AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTG  808
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|
Sbjct  889  AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CG  961

Query  809  TCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTT  882
            ||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  962  TCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTG  1035

Query  883  GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGT  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1036  GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGT  1109

Query  957  GCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCC  1030
            |||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||..|||
Sbjct 1110  GCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCC  1183

Query 1031  TGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC  1104
            ||||||||.||||||||.||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  TGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC  1257

Query 1105  TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA  1331

Query 1179  CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGC----------------------------------------  1212
            ||||||||||||||||||||||||||||||||||                                        
Sbjct 1332  CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGC  1405

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1406  CTTCCTGTACCACATGGGCCAACACAGCAACAAGTGAGGGAGCCCCTCGGGTCCTGAGCCCCCGGGCAGGGCTG  1479

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1480  TGCAGCCGTCGCCCTTGGTTCCCACTGAGGGTCCCTGGCTCACAGTGCTGGGCACCAGCTGTGGCCTCAGTGTG  1553

Query 1213  ----------------------------------------------------------------------GGCC  1216
                                                                                  ||||
Sbjct 1554  CCCACCTCAGATGTCCCCTGGGAACGGCCCAGCTCGGGACAGCACGGGGTGTCATTGAGGAACATGCAGGGGCC  1627

Query 1217  TCC-----------------------------------------------------------------------  1219
            |||                                                                       
Sbjct 1628  TCCCGGGCAGAGCTGGGGTCAGTCCTGTCTTCACGGCCCTGTGCGCCGCCGCCCCAGCTTGCAGGTCCCTCTGC  1701

Query 1220  ---------------------------------------------TGCT-------------------------  1223
                                                         ||||                         
Sbjct 1702  CCCTAGATTTCTGCGGTCCTGTGCCTGCAAGGGAGGTGGTCTGATTGCTGCCGCCCAGAGGTCCCCAGTAGGGT  1775

Query 1224  --------CTTTGT------------------------------------------------------------  1229
                    ||.|||                                                            
Sbjct 1776  GACCGGCCCTATGTCCAGGCTCCCTCTTCCCTCCCAAATCCCTTAATTTTGAGTTTTCTTGGTCTCCTGGGCCC  1849

Query 1230  ----------------------------GGATGAAG----------CGGACG----------------------  1243
                                        ||||.|||          |||.||                      
Sbjct 1850  CTCCAGCCCCAGTCACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTT  1923

Query 1244  -----CCT---------------------------------------------TCCTTC--------GGAAG--  1257
                 |||                                             ||||||        |.|||  
Sbjct 1924  GGGCTCCTGGGTCAGCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGC  1997

Query 1258  ----------------------------CGAGCCACCGAG------------------AAG---ATAAGC--GA  1280
                                        ||.|||.|||||                  |.|   ||||.|  ||
Sbjct 1998  TGGGGCCCTGCTGAGCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGA  2071

Query 1281  ---GGAC------------------------------------CTCAGG-------------------------  1290
               ||||                                    ||||||                         
Sbjct 2072  CAGGGACTCTGGGTCCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGG  2145

Query 1291  --------------------------------------GCCACAC------TGAAC----GCC-----------  1305
                                                  .||||||      .||||    |||           
Sbjct 2146  CACTGCCTATCAGGCTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGG  2219

Query 1306  ----------------------------------------------------------------------TTCC  1309
                                                                                  ||||
Sbjct 2220  GCGGGGGGCAGCTGGGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCC  2293

Query 1310  TGTAC----------------------------------------------------------------CGCAC  1319
            |||.|                                                                |.|.|
Sbjct 2294  TGTGCTCACAAGCTGCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTC  2367

Query 1320  GGGCCAGCACAG-----------------------------------CAACAAGTTCATGCTGGTCCTGGCCAG  1358
            |||.||.|.|||                                   |.|||..||||||||||||||||||||
Sbjct 2368  GGGGCATCTCAGCTGGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAG  2441

Query 1359  CAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGC  1432
            |||.|..||.||||||||||||||.||||||||...||||||..|.|.|||||||||||||||||||||...||
Sbjct 2442  CAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGC  2515

Query 1433  AGGAGGAACGGGAGCGCCTGGTGAGAATGTATTTTGACAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAG  1506
            |||||||.||||||||||||||||||.||.||||||||||.|.|||||||||||||||||||||||||||.|.|
Sbjct 2516  AGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGG  2589

Query 1507  CGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGG  1580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590  CGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGG  2663

Query 1581  CCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGG  1654
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||.||||
Sbjct 2664  CCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGG  2737

Query 1655  CCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGG  1728
            |||||||||||.||.|.|||||||||||||||||||||.|||..|||||||||.||||||||||||||||.|||
Sbjct 2738  CCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGG  2811

Query 1729  CCTGGGCGTGGGGACGAGCCCTCCCCATCC--------------------------------------------  1758
            ||||||||.||||.|||||.|.|||.||||                                            
Sbjct 2812  CCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGA  2885

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2886  CCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAG  2959

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2960  GGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCA  3033

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3034  CTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCAC  3107

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3108  AGGGGGAGGGTGAGGCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGG  3181

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3182  GGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCA  3255

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3256  GGACTAGACAGAAGTGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTG  3329

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3330  TCTGAGGCCGCCCTGTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCC  3403

Query 1759  -------------  1758
                         
Sbjct 3404  ACAGGTGCCTCAC  3416