Nucleotide Global Alignment

Description

Query:
TRCN0000469219
Subject:
NM_001312914.1
Aligned Length:
2854
Identities:
2209
Gaps:
368

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGAGGAAAACATGACGAAAAGCGAAGAGCAGCAACCTCTGAGTTTGCAAAAAGCCTTGCAGCAGTGCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTTGGTTCAGAACATGATCGACCTGAGCATCTCCAATCTGGAAGGGCTTAGGACCAAGTGTGCAGCTTCCAACG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCTCACGCAGAAGGAGATCAGGACCCTGGAGAGCAAGCTGGTGAAGTACTTCAGCCGACAGCTGTCCTGCAAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGAAGGTGGCTCTGCAGGAACGCAATGCTGAACTGGACGGCTTCCCCCAGCTCCGCCACTGGTTCCGGATCGT  296

Query    1  -------------------------------------------------------------------ATGACGG  7
                                                                               |||||.|
Sbjct  297  GGATGTCCGAAAGGAAGTCCTGGAGGAGATCTCCCCTGACCAGCTGAGCTTGGAGGACCTCCTGGAGATGACCG  370

Query    8  ATGAACAGGTGTGCGAGACTGTGGAGAAATACGGAGCCAACCGGGAGGAGTGTGCCCGCCTCAACGCCTCCCTC  81
            |.||.||||||||.|||||.||||||||.||.||||||||||.|||.|||||.|||||.|||||||||||.|||
Sbjct  371  ACGAGCAGGTGTGTGAGACCGTGGAGAAGTATGGAGCCAACCAGGAAGAGTGCGCCCGGCTCAACGCCTCACTC  444

Query   82  TCCTGCCTCAGGAATGTCCACATGTCAGGAGGCAACCTTTCCAAACAAGACTGGACCATCCAGTGGCCCACCAC  155
            |||||||||||||||||.||||..||||||||.||.||.|||||||||||.||||.||||||||||||||||||
Sbjct  445  TCCTGCCTCAGGAATGTGCACAAATCAGGAGGGAATCTCTCCAAACAAGATTGGATCATCCAGTGGCCCACCAC  518

Query  156  AGAGACGGGGAAGGAGAACAATCCCGTGTGCCCCCCGGAGCCCACCCCGTGGATCCGCACCCATCTCTCCCAGA  229
            .|||.|.|||.||||||.|||.||.|||||||||||||||||||.||||||||||||.|||||.||||||||||
Sbjct  519  GGAGCCAGGGCAGGAGAGCAACCCTGTGTGCCCCCCGGAGCCCAGCCCGTGGATCCGAACCCACCTCTCCCAGA  592

Query  230  GCCCCAGGGTCCCGTCCAAGTGCGTCCAGCACTATTGTCACACCAGCCCCACTCCCGGGGCCCCTGTGTACACC  303
            ||||||||||||.|.|||||||...||||||||..||||..||||||||.||.||.|||.||||||||||||||
Sbjct  593  GCCCCAGGGTCCAGACCAAGTGTCCCCAGCACTTCTGTCCTACCAGCCCTACGCCTGGGACCCCTGTGTACACC  666

Query  304  CACGTGGACAGGCTTACCGTGGACGCCTACCCGGGCTTGTGCCCGCCCCCGCCA---CTGGAGTCGGGCCACCG  374
            ||.||||||||.||.||.||.||.|||||||||..||||||||||||.||||||   |||||.||.||||||||
Sbjct  667  CAAGTGGACAGACTCACTGTAGATGCCTACCCGAACTTGTGCCCGCCGCCGCCACCCCTGGAATCAGGCCACCG  740

Query  375  TTCCCTGCCCCCATCGCCCCGGCAGCGGCACGCGGTCCGCACCCCGCCGCGCACCCCCAACATCGTCACCACCG  448
            .||.||||||||.||.||||||||||||||||..|||||||||||.||.||||||||.||.||.||||||||||
Sbjct  741  CTCTCTGCCCCCGTCTCCCCGGCAGCGGCACGTAGTCCGCACCCCACCTCGCACCCCAAATATTGTCACCACCG  814

Query  449  TGACCCCGCCGGGCACGCCGCCCATGAGGAAGAAGAACAAGCTGAAGCCCCCGGGGACCCCACCGCCCTCCTCC  522
            |||||||.||.||||||||.||||||||||..||.||||||||||||||.||.|||||.|||||.||||||||.
Sbjct  815  TGACCCCACCTGGCACGCCACCCATGAGGAGAAAAAACAAGCTGAAGCCTCCCGGGACGCCACCCCCCTCCTCT  888

Query  523  CGAAAACTGATACACTTGATCCCGGGATTCACCGCGCTGCATCGGAGCAAATCCCACGAGTTCCAGCTGGGGCA  596
            ||.||.||.||.||..|||||||.||.|||||.||||||||..|||||||||||||||||||||||||.|||.|
Sbjct  889  CGGAAGCTCATCCATCTGATCCCTGGCTTCACAGCGCTGCACAGGAGCAAATCCCACGAGTTCCAGCTCGGGAA  962

Query  597  CCGCGTGGACGAGGCCCACACGCCCAAAGCCAAGAAG-AGAGCAAACCCTTGAACCTCAAGATCCACAGCAGCG  669
            |||.||.|||||||||.||||.||||||||||||||| ||||||||||||||||||||||||||||||||.|||
Sbjct  963  CCGTGTAGACGAGGCCAACACACCCAAAGCCAAGAAGAAGAGCAAACCCTTGAACCTCAAGATCCACAGCGGCG  1036

Query  670  TAGGCAGCTGCGAGAACATCCCCTCTCAGCAGCGCTTCCCGCTGCTGTCCGAGCGCTCCCTCCGCTCCTTCTTT  743
            |.|||||||||||||||||||||.|.|||||.||||..|||||.|||||||||||||||.|.||.|||||||||
Sbjct 1037  TGGGCAGCTGCGAGAACATCCCCGCCCAGCAACGCTCTCCGCTCCTGTCCGAGCGCTCCTTGCGGTCCTTCTTT  1110

Query  744  GTGGGACACGCACCTTTCCTGCCTTCCACCCCTCCTGTTCACACTGAGGCCAACTTCTCTGCAAACACACTGTC  817
            |||||.||||..||.||||||||.||||||||.|||||.||||||||.|||||.|||||||||||||||||.||
Sbjct 1111  GTGGGCCACGGGCCCTTCCTGCCCTCCACCCCACCTGTCCACACTGAAGCCAATTTCTCTGCAAACACACTCTC  1184

Query  818  AGTGCCACGCTGGTCCCCGCAGATCCCTCGCAGAGATCTCGGCAACTCCATCAAGCACAGGTTTTCCACCAAGT  891
            .||.||.||||||||.||.||||||||.||||||||.||.|||||.||||||||||||||||||||||||||||
Sbjct 1185  TGTACCTCGCTGGTCACCACAGATCCCACGCAGAGACCTTGGCAATTCCATCAAGCACAGGTTTTCCACCAAGT  1258

Query  892  ACTGGATGTCTCAGACGTGCACAGTCTGTGGGAAAGGGATGCTTTTTGGCCTCAAGTGTAAAAACTGCAAGTTA  965
            ||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACTGGATGTCTCAGACGTGCACGGTCTGCGGGAAAGGGATGCTTTTTGGCCTCAAGTGTAAAAACTGCAAGTTA  1332

Query  966  AAGTGCCACAACAAATGCACCAAAGAAGCCCCACCCTGTCATCTTCTGATCATCCACCGAGGAGATCCAGCAAG  1039
            |||||||||||.||||||||||||||||||||.||||||||.||.|||||.||||||||||||||.||||||||
Sbjct 1333  AAGTGCCACAATAAATGCACCAAAGAAGCCCCGCCCTGTCACCTCCTGATTATCCACCGAGGAGACCCAGCAAG  1406

Query 1040  GTTAGTCCGGACAGAGTCCGTTCCGTGTGACATCAACAACCCTCTACGGAAGCCACCTCGCTATTCAGACCTGC  1113
            ||||||.||.||.|||||.||.||.|||||||||||||||||..|.||||||||..|.||.||||||||.||.|
Sbjct 1407  GTTAGTGCGAACGGAGTCGGTGCCCTGTGACATCAACAACCCGGTCCGGAAGCCTGCCCGATATTCAGATCTCC  1480

Query 1114  ACATCAGTCAGACGCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCTGTCCCTTACCAGCCAGACTCC  1187
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACATCAGTCAGACTCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCTGTCCCTTACCAGCCAGACTCC  1554

Query 1188  AGCAGCAACCCCTCCTCCACGACGTCCTCCACGCCCTCCTCGCCAGCACCCCCCCTCCCTCCTAGTGCCACGCC  1261
            ||||||||.||||||||||||||||||||||||||||||||.||.|||||||||||||||||.||.||||||||
Sbjct 1555  AGCAGCAATCCCTCCTCCACGACGTCCTCCACGCCCTCCTCACCGGCACCCCCCCTCCCTCCCAGCGCCACGCC  1628

Query 1262  GCCTTCTCCCCTACACCCTTCCCCACAGTGCACACGGCAGCAGAAGAACTTCAACCTGCCAGCATCCCACTACT  1335
            ||||||||||||.|||||.|||||.||||||.|..|.|||.|.||||||||||||||||||||.||||||||||
Sbjct 1629  GCCTTCTCCCCTGCACCCCTCCCCGCAGTGCCCGAGACAGAAAAAGAACTTCAACCTGCCAGCTTCCCACTACT  1702

Query 1336  ACAAATACAAGCAGCAGTTCATCTTCCCAGATGTGGTGCCGGTGCCGGAGACGCCGACCCGGGCGCCCCAGGTC  1409
            |||||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||||||||.|||||.|||
Sbjct 1703  ACAAATACAAGCAACAGTTCATCTTCCCAGATGTGGTGCCTGTACCAGAGACACCCACCCGGGCACCCCAAGTC  1776

Query 1410  ATCCTGCATCCGGTGACCTCGAATCCAATCTTGGAAGGAAATCCATTACTTCAAATTGAAGTGGAGCCAACGTC  1483
            |||||||||||.||.|||||.|||.||||||||||||||||.|||||||||||||||||||||||.|||||.||
Sbjct 1777  ATCCTGCATCCTGTCACCTCAAATACAATCTTGGAAGGAAACCCATTACTTCAAATTGAAGTGGAACCAACCTC  1850

Query 1484  GGAGAATGAAGAGGTCCATGATGAGGCCGAAGAGTCAGAGGATGACTTCGAGGAGATGAACCTGTCCCTCCTCT  1557
            .|||||.||||||..|||..||||.||.||.|||||.|||||.||.||.||.|||||||||||.||||||||||
Sbjct 1851  CGAGAACGAAGAGAGCCACAATGAAGCAGAGGAGTCCGAGGACGAGTTTGAAGAGATGAACCTATCCCTCCTCT  1924

Query 1558  CGGCCCGGAGCTTCCCACGCAAGGCCAGCCAGACCAGCATCTTCCTTCAGGAGTGGGACATCCCCTTTGAGCAG  1631
            |.||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||.|||
Sbjct 1925  CAGCCCGGAGCTTCCCACGCAAAGCCAGCCAGACCAGCATCTTCCTTCAGGAGTGGGACATCCCGTTTGAACAG  1998

Query 1632  CTGGAGATCGGCGAGCTCATTGGAAAGGGCCGCTTTGGGCAAGTGTACCACGGCCGCTGGCATGGCGAGGTGGC  1705
            ||.|||||.|||||||||||.||.|||||.|||||.|||||.||.||||||||.||||||||.|||||||||||
Sbjct 1999  CTAGAGATTGGCGAGCTCATCGGGAAGGGTCGCTTCGGGCAGGTTTACCACGGACGCTGGCACGGCGAGGTGGC  2072

Query 1706  CATCCGGCTGATTGACATTGAGAGGGACAACGAGGACCAGCTCAAGGCCTTCAAGCGGGAGGTGATGGCCTACA  1779
            |||||||.||||||||||.|||||||||||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 2073  CATCCGGTTGATTGACATAGAGAGGGACAATGAGGACCAGCTTAAGGCCTTCAAGCGGGAAGTGATGGCCTACA  2146

Query 1780  GGCAGACACGGCATGAGAACGTGGTGCTTTTCATGGGTGCCTGCATGAGCCCGCCTCACCTGGCCCATCATCAC  1853
            |||||||..||||.||||||||||||||.||||||||.||||||||||||||.||.|||.||| ||||||||||
Sbjct 2147  GGCAGACGAGGCACGAGAACGTGGTGCTCTTCATGGGAGCCTGCATGAGCCCACCCCACTTGG-CCATCATCAC  2219

Query 1854  CAGCCTCTGTAAGGGACGGACGCTCTATTCCGTTGTGAGGGATGCCAAAATCGTTTTGGATGTCAACAAAACCA  1927
            |||||||||||||||||||||.|||||.||.||.||||||||.|||||.||.||.|||||||||||||||||||
Sbjct 2220  CAGCCTCTGTAAGGGACGGACACTCTACTCTGTGGTGAGGGACGCCAAGATTGTCTTGGATGTCAACAAAACCA  2293

Query 1928  GGCAGATTGCTCAAGAAATTGTGAAGGGCATGGGCTACCTCCACGCCAAGGGAATCCTACACAAGGACCTCAAG  2001
            |||||||.||.|||||.|||||.|||||||||||||||||||||||||||||.|||||.||.|||||||||||.
Sbjct 2294  GGCAGATCGCGCAAGAGATTGTAAAGGGCATGGGCTACCTCCACGCCAAGGGGATCCTTCATAAGGACCTCAAA  2367

Query 2002  TCAAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACGGACTTTGGACTCTTCAGCATTTCTGGGGTGCT  2075
            ||.||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||
Sbjct 2368  TCGAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACAGACTTTGGGCTCTTCAGCATTTCCGGGGTGCT  2441

Query 2076  GCAGGCTGGCAGGCGGGAGGACAAACTGCGCATCCAGAATGGCTGGCTATGCCACCTGGCACCAGAGATCATCC  2149
            ||||||||||.|||||||.|||||||||||.||||||||.||||||||.||.||||||||.|||||.|||||||
Sbjct 2442  GCAGGCTGGCCGGCGGGACGACAAACTGCGGATCCAGAACGGCTGGCTGTGTCACCTGGCCCCAGAAATCATCC  2515

Query 2150  GCCAGCTGTCCCCCGACACAGAGGAGGATAAGCTCCCCTTCTCCAAGCACTCTGACGTCTTTGCCCTTGGCACA  2223
            |||||||||||||.||||||||.|||||.||||||||.||||||||||||||.||.||||||||.||||||||.
Sbjct 2516  GCCAGCTGTCCCCTGACACAGAAGAGGACAAGCTCCCATTCTCCAAGCACTCGGATGTCTTTGCGCTTGGCACC  2589

Query 2224  ATCTGGTATGAACTCCACGCCAGGGAATGGCCTTTCAAGACCCAACCAGCAGAGGCAATAATCTGGCAAATGGG  2297
            |||||||||||.||||||||||||||.|||||.||||||||||||||||||||||||||.||.|||||.|||||
Sbjct 2590  ATCTGGTATGAGCTCCACGCCAGGGAGTGGCCATTCAAGACCCAACCAGCAGAGGCAATCATTTGGCAGATGGG  2663

Query 2298  CACAGGCATGAAACCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGACATTCTTCTCTTCTGCTGGG  2371
            |||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||
Sbjct 2664  CACGGGAATGAAGCCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGACATACTGCTCTTCTGCTGGG  2737

Query 2372  CCTTTGAACAAGAAGAGAGACCTACCTTCACCAAGCTCATGGACATGCTGGAGAAACTGCCAAAGCGAAACCGT  2445
            ||||.||.||.||||||.|.||.|||||.||||||||||||||||||||.|||||||||||||||||||||||.
Sbjct 2738  CCTTCGAGCAGGAAGAGCGGCCCACCTTTACCAAGCTCATGGACATGCTAGAGAAACTGCCAAAGCGAAACCGC  2811

Query 2446  CGCCTGTCTCACCCTGGACATTTCTGGAAGTCTGCAGAGCTG  2487
            ||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 2812  CGCCTGTCGCACCCCGGACATTTCTGGAAGTCTGCAGAGCTG  2853

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.