Nucleotide Global Alignment
Description
- Query:
- TRCN0000469219
- Subject:
- XM_006530395.3
- Aligned Length:
- 2499
- Identities:
- 1546
- Gaps:
- 777
Alignment
Query 1 ATGACGGATGAACAGGTGTGCGAGACTGTGGAGAAATACGGAGCCAACCGGGAGGAGTGTGCCCGCCTCAACGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CTCCCTCTCCTGCCTCAGGAATGTCCACATGTCAGGAGGCAACCTTTCCAAACAAGACTGGACCATCCAGTGGC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CCACCACAGAGACGGGGAAGGAGAACAATCCCGTGTGCCCCCCGGAGCCCACCCCGTGGATCCGCACCCATCTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCCCAGAGCCCCAGGGTCCCGTCCAAGTGCGTCCAGCACTATTGTCACACCAGCCCCACTCCCGGGGCCCCTGT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GTACACCCACGTGGACAGGCTTACCGTGGACGCCTACCCGGGCTTGTGCCCGCCCCCGCCACTGGAGTCGGGCC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ACCGTTCCCTGCCCCCATCGCCCCGGCAGCGGCACGCGGTCCGCACCCCGCCGCGCACCCCCAACATCGTCACC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ACCGTGACCCCGCCGGGCACGCCGCCCATGAGGAAGAAGAACAAGCTGAAGCCCCCGGGGACCCCACCGCCCTC 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CTCCCGAAAACTGATACACTTGATCCCGGGATTCACCGCGCTGCATCGGAGCAAATCCCACGAGTTCCAGCTGG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGCACCGCGTGGACGAGGCCCACACGCCCAAAGCCAAGAAGAGAGCAAACCCTTGAACCTCAAGATCCACAGCA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GCGTAGGCAGCTGCGAGAACATCCCCTCTCAGCAGCGCTTCCCGCTGCTGTCCGAGCGCTCCCTCCGCTCCTTC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TTTG-----TGGGACACGCACCTTTCCTGCCTTCCACC--CCTCCTGTTCACACTG----AGGCCAACTTCTCT 803
.|| |.||| |..||||..|||.| | .|||.|| |||| .||.|
Sbjct 1 -ATGATGAATAGGA----------TGTTGCCGACCAACAGC--------AACAATGTATCAGGC-----GCTTT 50
Query 804 G-CAAACACACTGTCAGTGCCACGCTGGTCCCCGCAGATCCCTCGCAGAGATCTCGGCAACTCCATCAAGCACA 876
| |.||||||||.||.||.||.||||||||.||.||||||||.||||||||.||.|||||.|||||||||||||
Sbjct 51 GCCGAACACACTCTCTGTACCTCGCTGGTCACCACAGATCCCACGCAGAGACCTTGGCAATTCCATCAAGCACA 124
Query 877 GGTTTTCCACCAAGTACTGGATGTCTCAGACGTGCACAGTCTGTGGGAAAGGGATGCTTTTTGGCCTCAAGTGT 950
|||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct 125 GGTTTTCCACCAAGTACTGGATGTCTCAGACGTGCACGGTCTGCGGGAAAGGGATGCTTTTTGGCCTCAAGTGT 198
Query 951 AAAAACTGCAAGTTAAAGTGCCACAACAAATGCACCAAAGAAGCCCCACCCTGTCATCTTCTGATCATCCACCG 1024
||||||||||||||||||||||||||.||||||||||||||||||||.||||||||.||.|||||.||||||||
Sbjct 199 AAAAACTGCAAGTTAAAGTGCCACAATAAATGCACCAAAGAAGCCCCGCCCTGTCACCTCCTGATTATCCACCG 272
Query 1025 AGGAGATCCAGCAAGGTTAGTCCGGACAGAGTCCGTTCCGTGTGACATCAACAACCCTCTACGGAAGCCACCTC 1098
||||||.||||||||||||||.||.||.|||||.||.||.|||||||||||||||||..|.||||||||..|.|
Sbjct 273 AGGAGACCCAGCAAGGTTAGTGCGAACGGAGTCGGTGCCCTGTGACATCAACAACCCGGTCCGGAAGCCTGCCC 346
Query 1099 GCTATTCAGACCTGCACATCAGTCAGACGCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCTGTCCCT 1172
|.||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GATATTCAGATCTCCACATCAGTCAGACTCTCCCCAAAACCAACAAAATCAACAAGGACCACATCCCTGTCCCT 420
Query 1173 TACCAGCCAGACTCCAGCAGCAACCCCTCCTCCACGACGTCCTCCACGCCCTCCTCGCCAGCACCCCCCCTCCC 1246
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||.||||||||||||||
Sbjct 421 TACCAGCCAGACTCCAGCAGCAATCCCTCCTCCACGACGTCCTCCACGCCCTCCTCACCGGCACCCCCCCTCCC 494
Query 1247 TCCTAGTGCCACGCCGCCTTCTCCCCTACACCCTTCCCCACAGTGCACACGGCAGCAGAAGAACTTCAACCTGC 1320
|||.||.||||||||||||||||||||.|||||.|||||.||||||.|..|.|||.|.||||||||||||||||
Sbjct 495 TCCCAGCGCCACGCCGCCTTCTCCCCTGCACCCCTCCCCGCAGTGCCCGAGACAGAAAAAGAACTTCAACCTGC 568
Query 1321 CAGCATCCCACTACTACAAATACAAGCAGCAGTTCATCTTCCCAGATGTGGTGCCGGTGCCGGAGACGCCGACC 1394
||||.|||||||||||||||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.|||
Sbjct 569 CAGCTTCCCACTACTACAAATACAAGCAACAGTTCATCTTCCCAGATGTGGTGCCTGTACCAGAGACACCCACC 642
Query 1395 CGGGCGCCCCAGGTCATCCTGCATCCGGTGACCTCGAATCCAATCTTGGAAGGAAATCCATTACTTCAAATTGA 1468
|||||.|||||.||||||||||||||.||.|||||.|||.||||||||||||||||.|||||||||||||||||
Sbjct 643 CGGGCACCCCAAGTCATCCTGCATCCTGTCACCTCAAATACAATCTTGGAAGGAAACCCATTACTTCAAATTGA 716
Query 1469 AGTGGAGCCAACGTCGGAGAATGAAGAGGTCCATGATGAGGCCGAAGAGTCAGAGGATGACTTCGAGGAGATGA 1542
||||||.|||||.||.|||||.||||||..|||..||||.||.||.|||||.|||||.||.||.||.|||||||
Sbjct 717 AGTGGAACCAACCTCCGAGAACGAAGAGAGCCACAATGAAGCAGAGGAGTCCGAGGACGAGTTTGAAGAGATGA 790
Query 1543 ACCTGTCCCTCCTCTCGGCCCGGAGCTTCCCACGCAAGGCCAGCCAGACCAGCATCTTCCTTCAGGAGTGGGAC 1616
||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 791 ACCTATCCCTCCTCTCAGCCCGGAGCTTCCCACGCAAAGCCAGCCAGACCAGCATCTTCCTTCAGGAGTGGGAC 864
Query 1617 ATCCCCTTTGAGCAGCTGGAGATCGGCGAGCTCATTGGAAAGGGCCGCTTTGGGCAAGTGTACCACGGCCGCTG 1690
|||||.|||||.|||||.|||||.|||||||||||.||.|||||.|||||.|||||.||.||||||||.|||||
Sbjct 865 ATCCCGTTTGAACAGCTAGAGATTGGCGAGCTCATCGGGAAGGGTCGCTTCGGGCAGGTTTACCACGGACGCTG 938
Query 1691 GCATGGCGAGGTGGCCATCCGGCTGATTGACATTGAGAGGGACAACGAGGACCAGCTCAAGGCCTTCAAGCGGG 1764
|||.||||||||||||||||||.||||||||||.|||||||||||.|||||||||||.||||||||||||||||
Sbjct 939 GCACGGCGAGGTGGCCATCCGGTTGATTGACATAGAGAGGGACAATGAGGACCAGCTTAAGGCCTTCAAGCGGG 1012
Query 1765 AGGTGATGGCCTACAGGCAGACACGGCATGAGAACGTGGTGCTTTTCATGGGTGCCTGCATGAGCCCGCCTCAC 1838
|.||||||||||||||||||||..||||.||||||||||||||.||||||||.||||||||||||||.||.|||
Sbjct 1013 AAGTGATGGCCTACAGGCAGACGAGGCACGAGAACGTGGTGCTCTTCATGGGAGCCTGCATGAGCCCACCCCAC 1086
Query 1839 CTGGCCCATCATCACCAGCCTCTGTAAGGGACGGACGCTCTATTCCGTTGTGAGGGATGCCAAAATCGTTTTGG 1912
.||| |||||||||||||||||||||||||||||||.|||||.||.||.||||||||.|||||.||.||.||||
Sbjct 1087 TTGG-CCATCATCACCAGCCTCTGTAAGGGACGGACACTCTACTCTGTGGTGAGGGACGCCAAGATTGTCTTGG 1159
Query 1913 ATGTCAACAAAACCAGGCAGATTGCTCAAGAAATTGTGAAGGGCATGGGCTACCTCCACGCCAAGGGAATCCTA 1986
||||||||||||||||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||.|||||.
Sbjct 1160 ATGTCAACAAAACCAGGCAGATCGCGCAAGAGATTGTAAAGGGCATGGGCTACCTCCACGCCAAGGGGATCCTT 1233
Query 1987 CACAAGGACCTCAAGTCAAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACGGACTTTGGACTCTTCAG 2060
||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||.||||||||.||||||||
Sbjct 1234 CATAAGGACCTCAAATCGAAGAACGTCTTCTATGACAACGGCAAAGTGGTCATCACAGACTTTGGGCTCTTCAG 1307
Query 2061 CATTTCTGGGGTGCTGCAGGCTGGCAGGCGGGAGGACAAACTGCGCATCCAGAATGGCTGGCTATGCCACCTGG 2134
||||||.||||||||||||||||||.|||||||.|||||||||||.||||||||.||||||||.||.|||||||
Sbjct 1308 CATTTCCGGGGTGCTGCAGGCTGGCCGGCGGGACGACAAACTGCGGATCCAGAACGGCTGGCTGTGTCACCTGG 1381
Query 2135 CACCAGAGATCATCCGCCAGCTGTCCCCCGACACAGAGGAGGATAAGCTCCCCTTCTCCAAGCACTCTGACGTC 2208
|.|||||.||||||||||||||||||||.||||||||.|||||.||||||||.||||||||||||||.||.|||
Sbjct 1382 CCCCAGAAATCATCCGCCAGCTGTCCCCTGACACAGAAGAGGACAAGCTCCCATTCTCCAAGCACTCGGATGTC 1455
Query 2209 TTTGCCCTTGGCACAATCTGGTATGAACTCCACGCCAGGGAATGGCCTTTCAAGACCCAACCAGCAGAGGCAAT 2282
|||||.||||||||.|||||||||||.||||||||||||||.|||||.||||||||||||||||||||||||||
Sbjct 1456 TTTGCGCTTGGCACCATCTGGTATGAGCTCCACGCCAGGGAGTGGCCATTCAAGACCCAACCAGCAGAGGCAAT 1529
Query 2283 AATCTGGCAAATGGGCACAGGCATGAAACCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGACATTC 2356
.||.|||||.||||||||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1530 CATTTGGCAGATGGGCACGGGAATGAAGCCCAACCTCAGCCAGATTGGCATGGGAAAAGAAATCTCGGACATAC 1603
Query 2357 TTCTCTTCTGCTGGGCCTTTGAACAAGAAGAGAGACCTACCTTCACCAAGCTCATGGACATGCTGGAGAAACTG 2430
|.|||||||||||||||||.||.||.||||||.|.||.|||||.||||||||||||||||||||.|||||||||
Sbjct 1604 TGCTCTTCTGCTGGGCCTTCGAGCAGGAAGAGCGGCCCACCTTTACCAAGCTCATGGACATGCTAGAGAAACTG 1677
Query 2431 CCAAAGCGAAACCGTCGCCTGTCTCACCCTGGACATTTCTGGAAGTCTGCAGAGCTG 2487
||||||||||||||.||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 1678 CCAAAGCGAAACCGCCGCCTGTCGCACCCCGGACATTTCTGGAAGTCTGCAGAGCTG 1734
