Nucleotide Global Alignment

Description

Query:
TRCN0000469304
Subject:
XM_006538380.2
Aligned Length:
3977
Identities:
1153
Gaps:
2644

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCACACAGGAGGCTGCAGTGCTAAAACAAAGCCCCACATAAAAGAAGAATGCATCATTCCCACACCGTGCTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAGCCCAGAGAGAAACTTCCAATAGAGGCCAAGCTGCCATGGTTCAAGCAAGCCCAGGAGCTAGAGGAAGGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGCAGTGTCTGAAGAGCCTTCGTTCATCCCAGAAGCTTGGTCGGCCTGTACTGTCACCTGTGGCGTGGGGACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGGTGCGAATAATAAGATGCCAGGTGCTCCTGCCTTTCTCTCAGTCTGTGGCTGACCTGCCTGCGGATGAATG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGAAGGGCCTAAGCCAGCATCGCAACGTGCCTGTTATGCGGGACCGTGCAACGGGGAAACTCCGGAATTTAACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGGATAACGGAGACGGACTCTTGGGTGGCCTGCAGGACCTGGACGAGCTGTATGACTGGGAATATGAGGGCTTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCAAGTGCTCTGAGTCATGTGGAGGAGGTGTCCAGGAGGCTGTGGTAAGCTGCCTGAACAAACAGACCCGGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTCGCTGATGAGAACCTGTGTGTGACCAGCCGACGGCCCCCGCAGCTCCTGAAATCCTGTAACTTGGATCCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCCCAGCAAGGTGGGAAATTGGCAAGTGGAGCCCATGTAGCCTCACCTGTGGGGTTGGCCTGCAGACCAGAGAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTGTCTGTTCCCACCTACTCTCCAGAGAGATGAACGAGGTGGTTGTCCTGGCCGATGAGCTGTGCCATCACCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAAACCCAGCACAGTGCAAGCCTGCAACCGTTTCAATTGCCCCCCAGCCTGGTACCCTGCACAGTGGCAGCTGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTCCAGGACCTGTGGAGGAGGGATTCAGAAACGTGATGTTCTCTGCAAGCAGCGTATGGCTGACGGCAGCTTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGGAGCTTCCAGAGACCTTCTGTTCTGCCTCCAAACCAACCTCCCACCAAGGGTGCAAGAAAGATGACTGCCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CAGTGAGTGGCTTCTCTCAGAGTGGTCAGAGTGCTCTGTGAGCTGTGGGGAGGGCACCCAGACTCGAAGTGCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTGCCAGAGGGTGCTGAAAACTGGGGTCTCCACTGTTGTCAATTCTACTTTGTGCCCTCCCCTGCCCTTCTCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCCTCCATCAGACCCTGTATGCTGGCAACCTGTGCAAGGCCTGGAAGGCCTTCCACCAAGCACAGTCCTCACAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CGCAGCTGCACGAAACATATACATCCAGACCCGCAGGCAGAGGAAGCTGCACTTCGTTGTGGGAGGATTTGCTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACCTGCTTCCCAAGACTACCGTGGTGCTCCGGTGTCCCACACGCAGATTCCGCAAGCCCCTCATCACGTGGGAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGGACGGCCAGCACAGCATCAGCTCGGCTCATGTCACCGTAGCCCCTTTTGGCTACCTGAAGATCCATCGCCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAAGCCCTCAGATGCGGGCATCTACACCTGTTCTGCGGGGCCCGCCCGGGAGCAGTTTGTGATTAAGCTCATTG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAGGCAACCGCAAGCTCGTGGCCAGGCCCCTGAGCCTTTGGAGTGAGGAAGAGGAGGCCCTGCAGGTGAGGAAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACCAATCCAAAAGAAGCCTTGCAAACCCACAAACACCAAAATGGCATCTTCTCCAACGGCAGCAAAGCTGAGAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCGCGGCCTCACTGCAGATCCTGGGAACCGCTATGATGACATTGTGTCTAGGCTGTTGGAGCAGGGCGGCTGGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGGAGAGCTCCTGGCCTCGTGGGAGGTGCAGGACTCTGCAGAAAGGAACGCATCCTCAGAAGAGGATCCCAAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCTGAACAGGCCCTCCTGCATCTCCCCTTCACCATGGTGGCCGAGCAGAAGCGTCTGGATGACATCCTCAGGAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCTGTCCCAGCAGCCAGAGGAGCTACGGGACCTCTACAGCAAGCACCTGGTGGCCCAGCTGGCCCAGGACATCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCCGAAGCCACCTGGAGAACCAGGATCTGCTTCCTAAGCCCTCTGAGCAGAGGTTTCCTCCCATGGCCGTCCCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTCACAAACATGTCTCTGGCTTCAGCAGCTCCCTAAGGAGCTCATCTGGAGAGGCTGGAGGTGGCTCCCGTAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCCTCATCGCAAGCCCGCCATCTTGCGGAAGATCTCAGCGGCACAGCAACTCTCAGCCTCGGAGGTAGTCACCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCTGGGGCAGACTGTGGCTCTAGCCAGTGGGACCCTGAGTGTGCTTCTGCACTGTGAGGCGGTAGGCAACCCA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGGCCCACCATCCACTGGACCAGGAACGGAGAAGCAGTTCAATTCAGTGACAGGATTCTTCTACAGCCAGATGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTCCTTACAGATCTTGGCACCAGTGGAAGCTGATGTGGGTTTCTATACTTGCAATGCCACAAATGCCTTGGGAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATGACTCTGTCTCCATTGCTGTCACATTAGCAGGAAAGCCACTAGTGAAGACATCCCGAATGACTGTGCTCAAC  2442

Query    1  -------------------------------------------------------------ATGTG---TTTGA  10
                                                                         |||||   .||.|
Sbjct 2443  ACAGAGAAGCCTACAGTCACAGTGGATATCGGTGGCACCGTCAGAACCGTCCGAGGAGTGAATGTGACAATTAA  2516

Query   11  CTGATGAGTGGGGTTTTTTGTTTTTTTTTTTCTTCCTAGGAGTGCCTGAAGCTGAAGTCACTTGGTTCAGGAAT  84
            |||...|||||                         .|||.||.|||||||||||||||||.||||||||.|||
Sbjct 2517  CTGCCAAGTGG-------------------------CAGGTGTACCTGAAGCTGAAGTCACCTGGTTCAGAAAT  2565

Query   85  AAAAGCAAACTGGGCTCC-------------------------CCGCACCATCTGCACGAAGGCTCCTTGCTGC  133
            |||||||||.||||||||                         || |||||.|||||.||.|||||||||||||
Sbjct 2566  AAAAGCAAATTGGGCTCCTCCCACCACCTGCATGAGGGCTCCTCC-CACCACCTGCATGAGGGCTCCTTGCTGC  2638

Query  134  TCACAAACGTGTCCTCCTCGGATCAGGGCCTGTACTCCTGCAGGGCGGCCAATCTTCATGGAGAGCTGACTGAG  207
            |||||.|.|||||||.|||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|.|||.|||
Sbjct 2639  TCACAGATGTGTCCTTCTCTGATCAAGGCCTGTATTCCTGCAGGGCAGCCAATCTACACGGAGAACAGACAGAG  2712

Query  208  AGCACCCAGCTGCTGATCCTAGATCCCCCCCAAGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCGCTGC  281
            |||||.|||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||...||
Sbjct 2713  AGCACGCAGCTCCTGATTCTAGATCCCCCGCAAGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTCTTAGC  2786

Query  282  CACTGGACCGAACCTTCCTTCAGTGCTGACGTCTCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCTG  355
            |||||||||||||||||||||.|||||.|.|||.||||||||||||||||||||||||||||||||||||||.|
Sbjct 2787  CACTGGACCGAACCTTCCTTCGGTGCTTATGTCCCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAATTCCG  2860

Query  356  CTCTCCTTGGCTGCCCCATCAAAGGTCACCCTGTCCCTAATATCACCTGGTTTCATGGTGGTCAGCCAATTGTC  429
            |||||||||||||||||||||||||||||||...|||.||||||||||||||.||...|||.||||||||||.|
Sbjct 2861  CTCTCCTTGGCTGCCCCATCAAAGGTCACCCCACCCCCAATATCACCTGGTTCCAAAATGGCCAGCCAATTGCC  2934

Query  430  ACTGCCACAGGACTGACGCATCACATCTTGGCAGCTGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTC  503
            ||||||.|.||.|||||.||.|||||||.||.|||||||||||||||.|.|||||||||.||.||.||.||..|
Sbjct 2935  ACTGCCCCGGGGCTGACCCACCACATCTGGGGAGCTGGACAGATCCTACGAGTTGCAAATCTCAGTGGAGGACC  3008

Query  504  TCAAGGGGAATTCAGCTGCCTTGCCCAGAATGAGGCAGGGGTGCTCATGCAGAAGGCATCTTTAGTGATCCAAG  577
            |||||||||.|||||||||||.||.||||||||.||||||...|||.|||||||.||.|||||.||||||||||
Sbjct 3009  TCAAGGGGAGTTCAGCTGCCTGGCTCAGAATGAAGCAGGGACCCTCCTGCAGAAAGCCTCTTTGGTGATCCAAG  3082

Query  578  ATTACTGGTGGTCTGTGGACAGACTGGCAACCTGCTCAGCCTCCTGTGGTAACCGGGGGGTTCAGCAGCCCCGC  651
            |||||||||||||||||||.|||||||||||||||||.||.||.||||||||..|.||..||||.|||||.||.
Sbjct 3083  ATTACTGGTGGTCTGTGGATAGACTGGCAACCTGCTCCGCATCTTGTGGTAATAGAGGCATTCATCAGCCGCGA  3156

Query  652  TTGAGGTGCCTGCTGAACAGCACGGAGGTCAACCCTGCCCACTGCGCAGGGAAGGTTCGCCCTGCGGTGCAGCC  725
            .|.|||||..|.|||||||.||||||.||..||||||..|||||..||||.|||..|||.||.||.||||||||
Sbjct 3157  CTCAGGTGTTTACTGAACACCACGGAAGTTGACCCTGAGCACTGTACAGGAAAGCCTCGGCCCGCCGTGCAGCC  3230

Query  726  CATCGCGTGCAACCGGAGAGACTGCCCTTCTCGGTGGATGGTGACCTCCTGGTCTGCCTGTACCCGGAGCTGTG  799
            ..|.||.|||||||||||||||||.||||||||.|||||||||||.||||||||.||||||||||||||.||.|
Sbjct 3231  TGTTGCCTGCAACCGGAGAGACTGTCCTTCTCGATGGATGGTGACGTCCTGGTCCGCCTGTACCCGGAGTTGCG  3304

Query  800  GGGGAGGTGTCCAGACCCGCAGGGTGACCTGTCAAAAGCTGAAAGCCTCTGGGATCTCCACCCCTGTGTCCAAT  873
            |.||||||||.||.|||||.||||||||||||||.|||.|||||||.|||||.||.||.|||||.|||||||||
Sbjct 3305  GTGGAGGTGTACAAACCCGAAGGGTGACCTGTCAGAAGTTGAAAGCTTCTGGTATTTCTACCCCGGTGTCCAAT  3378

Query  874  GACATGTGCACCCAGGTCGCCAAGCGGCCTGTGGACACCCAGGCCTGTAACCAGCAGCTGTGTGTGGAGTGGGC  947
            ||||||||||..||..|.|||||.|||||||||||||||||||||||.|||||||||||.||||||||.|||||
Sbjct 3379  GACATGTGCAGTCAACTGGCCAAACGGCCTGTGGACACCCAGGCCTGCAACCAGCAGCTCTGTGTGGAATGGGC  3452

Query  948  CTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATCGGGCCTCACCTAGCTGTGCAACACAGACAAGTCTTCT  1021
            ||||||||||||||||||||||||||||||||||||.||.||||.|||.||||||||.|||||.||.|||||||
Sbjct 3453  CTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATAGGCCCTCGCCTTGCTGTGCAGCACAGGCAGGTCTTCT  3526

Query 1022  GCCAGACACGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCTCTTCCGAGGCCTGTGAGCACCCAGAAC  1095
            |||||||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.|||||||||||.|||
Sbjct 3527  GCCAGACCCGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCCCTCCCCAGGCCCGTGAGCACCCAAAAC  3600

Query 1096  TGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTGTGGACCCTGTGCACAGCTACCTGTGGCAACTA  1169
            |||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||.||||||||||||||
Sbjct 3601  TGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTCTGGACCCTATGCACGGCAACCTGTGGCAACTA  3674

Query 1170  CGGCTTCCAGTCCCGGCGTGTGGAGTGTGTGCATGCCCGCACCAACAAGGCAGTGCCTGAGCACCTGTGCTCCT  1243
            .|||||||||||||||||.|||||||||||.||.|..||||||||||||||.|||||.|||||||||||.||||
Sbjct 3675  TGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTCACGTGCGCACCAACAAGGCTGTGCCCGAGCACCTGTGTTCCT  3748

Query 1244  GGGGGCCCCGGCCTGCCAACTGGCAGCGCTGCAACATCACCCCATGTGAAAACATGGAGTGC------------  1305
            |||||||||||||.|||||||||||.|||||||||.||||.||||||||||||    |||.|            
Sbjct 3749  GGGGGCCCCGGCCCGCCAACTGGCAACGCTGCAACGTCACTCCATGTGAAAAC----AGTACGTTCCAATCCCA  3818

Query 1306  -AGAGACA--------------------CCACCAGGTACTGCGAGAAGGTGAAACAGCTGAAACTCTGCC--AA  1356
             ||| |||                    |||.|.|||||    |||  |.|.||...|||..|||..|||  ||
Sbjct 3819  AAGA-ACATTCTGCAAATTCCCTACAGGCCATCGGGTAC----AGA--GGGCAATCCCTGGGACTGAGCCTGAA  3885

Query 1357  CTCAG----------CCAGTTTAAATCTCGCTGCTGTGGAACTTGTGGCAAAGCG  1401
            |.|||          |.|||     ||.|                          
Sbjct 3886  CACAGGGCACTGGATCAAGT-----TCCC--------------------------  3909

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