Construct: ORF TRCN0000469304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006573.1_s317c1
- Derived from:
- ccsbBroadEn_12984
- DNA Barcode:
- CTCCTGCAATCATGGACCCCAGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADAMTSL1 (92949)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469304
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_011518068.2 | 34.9% | 34.6% | (many diffs) |
| 2 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_011518070.2 | 34.9% | 34.6% | (many diffs) |
| 3 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_011518067.1 | 32.5% | 32.1% | (many diffs) |
| 4 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_017015313.1 | 28.1% | 27.8% | (many diffs) |
| 5 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | NM_001040272.6 | 25.7% | 25.4% | (many diffs) |
| 6 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_017015312.2 | 25.2% | 25% | (many diffs) |
| 7 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_017015311.1 | 25% | 24.8% | (many diffs) |
| 8 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_011518064.3 | 25% | 24.7% | (many diffs) |
| 9 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_017015310.1 | 25% | 24.7% | (many diffs) |
| 10 | human | 92949 | ADAMTSL1 | ADAMTS like 1 | XM_011518063.2 | 24.8% | 24.5% | (many diffs) |
| 11 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538381.2 | 37% | 38.6% | (many diffs) |
| 12 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538379.3 | 28.9% | 29.3% | (many diffs) |
| 13 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538380.2 | 28.9% | 29.3% | (many diffs) |
| 14 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | NM_029967.3 | 22.6% | 23.6% | (many diffs) |
| 15 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538378.3 | 21.4% | 21.7% | (many diffs) |
| 16 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538375.1 | 19.9% | 20.7% | (many diffs) |
| 17 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538377.1 | 19.4% | 19.6% | (many diffs) |
| 18 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538376.1 | 19.1% | 19.4% | (many diffs) |
| 19 | mouse | 77739 | Adamtsl1 | ADAMTS-like 1 | XM_006538374.1 | 19% | 19.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1470
- ORF length:
- 1401
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtgtttgact gatgagtggg gttttttgtt tttttttttc ttcctaggag 121 tgcctgaagc tgaagtcact tggttcagga ataaaagcaa actgggctcc ccgcaccatc 181 tgcacgaagg ctccttgctg ctcacaaacg tgtcctcctc ggatcagggc ctgtactcct 241 gcagggcggc caatcttcat ggagagctga ctgagagcac ccagctgctg atcctagatc 301 ccccccaagt ccccacacag ttggaagaca tcagggcctt gctcgctgcc actggaccga 361 accttccttc agtgctgacg tctcctctgg gaacacagct ggtcctggat cctgggaatt 421 ctgctctcct tggctgcccc atcaaaggtc accctgtccc taatatcacc tggtttcatg 481 gtggtcagcc aattgtcact gccacaggac tgacgcatca catcttggca gctggacaga 541 tccttcaagt tgcaaacctt agcggtgggt ctcaagggga attcagctgc cttgcccaga 601 atgaggcagg ggtgctcatg cagaaggcat ctttagtgat ccaagattac tggtggtctg 661 tggacagact ggcaacctgc tcagcctcct gtggtaaccg gggggttcag cagccccgct 721 tgaggtgcct gctgaacagc acggaggtca accctgccca ctgcgcaggg aaggttcgcc 781 ctgcggtgca gcccatcgcg tgcaaccgga gagactgccc ttctcggtgg atggtgacct 841 cctggtctgc ctgtacccgg agctgtgggg gaggtgtcca gacccgcagg gtgacctgtc 901 aaaagctgaa agcctctggg atctccaccc ctgtgtccaa tgacatgtgc acccaggtcg 961 ccaagcggcc tgtggacacc caggcctgta accagcagct gtgtgtggag tgggccttct 1021 ccagctgggg ccagtgcaat gggccttgca tcgggcctca cctagctgtg caacacagac 1081 aagTCTTCTG CCAGACACGG GATGGCATCA CCTTACCATC AGAGCAGTGC AGTGCTCTTC 1141 CGAGGCCTGT GAGCACCCAG AACTGCTGGT CAGAGGCCTG CAGTGTACAC TGGAGAGTCA 1201 GCCTGTGGAC CCTGTGCACA GCTACCTGTG GCAACTACGG CTTCCAGTCC CGGCGTGTGG 1261 AGTGTGTGCA TGCCCGCACC AACAAGGCAG TGCCTGAGCA CCTGTGCTCC TGGGGGCCCC 1321 GGCCTGCCAA CTGGCAGCGC TGCAACATCA CCCCATGTGA AAACATGGAG TGCAGAGACA 1381 CCACCAGGTA CTGCGAGAAG GTGAAACAGC TGAAACTCTG CCAACTCAGC CAGTTTAAAT 1441 CTCGCTGCTG TGGAACTTGT GGCAAAGCGT TGCCAACTTT CTTGTACAAA GTGGTTGATA 1501 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1561 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACTCCT 1621 GCAATCATGG ACCCCAGTCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1681 tgaaagatt