Nucleotide Global Alignment

Description

Query:
TRCN0000469518
Subject:
XR_001778969.1
Aligned Length:
2545
Identities:
1038
Gaps:
1341

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGAGCGGAGCGATGGCGGCGGCGCACCGGAAGTGGCACGCCGGAAGCCCGGTGGGCGTGCCGGAGACGTGTCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTGGGAGCCTTGGAGCCGCTTCGCCGGTGTCTGGACCTGGAAGGCTGTGTCTGTTCCTCCTGCGCTTCGTGGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCAGCGAGGCAGCGTGGGGAGGCGGCGACGACGGCGACGGCGGCGGTCCGGCCTGGGATCGGAGGCCACCGGG  222

Query    1  ---------ATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGGA  65
                     |||||.||.||.||||||||.||||..||||||||..||||||||||||.||||||.||||.|||
Sbjct  223  AGCCCAGCCATGGCCGACTCGGTGGAGCGGCTGCGACAGCGGGTTGAGGAGCTGGAGCAGGAACTCGCCCGGGA  296

Query   66  GAGGAGTCTGCAGGTCCCGAGGAG-CGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG  138
            |||.|..|.|| |.||..||||.| ||||.||      .||||||||..|||||||.||.||||||||...|||
Sbjct  297  GAGAACCCGGC-GCTCTGGAGGGGACGGCCAC------TGCGGCCGGACCCGCATCCAGGAGATGAGCGACGAG  363

Query  139  GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT  212
            |||.|||||||.||||||||||||||..||||||||||||||||.|||||||||||.||.||||||.|||||||
Sbjct  364  GTGTTGGATTCCAATCCCTACAGCCGTCTGATGGCATTGAAACGGATGGGAATTGTCAGTGACTATAAGAAAAT  437

Query  213  CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG  286
            ||||||||..||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  438  CCGTACCTACGCTGTAGCAATAGTAGGTGTTGGTGGAGTTGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG  511

Query  287  GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT  360
            |||||||||||.||||.||||||||.|||||.||||||||.||.|||||.||||||.|.|||||||||||.||.
Sbjct  512  GCATTGGTAAGCTGCTGCTCTTTGACTATGATAAGGTGGAGCTGGCCAACATGAATCGGCTTTTCTTCCAGCCA  585

Query  361  CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA  434
            .|||||||||||.|.|||||.||.||.|||||||||||.||.||||||||||||||.|||||||||||.|||||
Sbjct  586  TATCAAGCAGGACTGAGTAAGGTCCACGCAGCAGAACACACCCTGAGGAACATTAACCCTGATGTTCTGTTTGA  659

Query  435  AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG  508
            |||.||||||||.|||||.||||||||||||.|||||.|||||||||||.|||||||||||||||||||.||||
Sbjct  660  AGTCCACAACTACAATATCACCACAGTGGAACACTTTGAACATTTCATGAATAGAATAAGTAATGGTGGATTAG  733

Query  509  AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT  582
            ||||||||.||||||||||.|||||||||||||||||||||||.|||||||||||||||.||||||||||||||
Sbjct  734  AAGAAGGACAACCTGTTGACCTAGTTCTTAGCTGTGTGGACAACTTTGAAGCTCGAATGGCAATAAATACAGCT  807

Query  583  TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT  656
            ||||||||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||.||.|||||.||
Sbjct  808  TGTAATGAACTTGGTCAGACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCCGGGCACATCCAGCTGAT  881

Query  657  AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC  730
            .||.||||||||.||.|||||.||.||||||||.||||||||||||||||||.||||||||||||||||.||.|
Sbjct  882  GATCCCTGGAGAGTCGGCTTGCTTCGCGTGTGCGCCACCACTTGTAGTTGCTTCAAATATTGATGAAAAAACCC  955

Query  731  TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC  804
            |||||||||||||.||.||.|||||||||||.||.|||||.|||||.|||||.||.||||||||.||||||||.
Sbjct  956  TGAAACGAGAAGGCGTCTGCGCAGCCAGTCTCCCCACCACCATGGGGGTGGTGGCCGGGATCTTGGTACAAAAT  1029

Query  805  GTGTTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCC  878
            ||..||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.||
Sbjct 1030  GTACTAAAGTTTCTGTTAAAATTTGGCACTGTCAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTCCC  1103

Query  879  TACTATGTCCATGAAGCCAAATCCTCAGTGTGATGACAGAAATTGCAGGAAGCAGCAGGAGGAATATA------  946
            |||.||||.||||||||||||.||||||||||||||||.|||.||.||.|||||.||.||.|||||.|      
Sbjct 1104  TACCATGTTCATGAAGCCAAACCCTCAGTGTGATGACAAAAACTGTAGAAAGCAACAAGAAGAATACAAGATCA  1177

Query  947  ------------------------------------------------------------------------AG  948
                                                                                    ||
Sbjct 1178  AATGCCTGTGTGAATTCCTGAGTGCTGCAGAGAACTGAGGAGTAACCCGTGTTGGTTCTGCTTGCTTTACACAG  1251

Query  949  AAAAAGGTAGCAGCACTGCCTAAACAAGAGGTTATA----CAAGAAGAGGAAGAGATAATCCATGAAGATAATG  1018
            ||.|.||.||||||||||||.|..||.||||.| .|    ||.||.||||.||||.|..|.|||||.||.||.|
Sbjct 1252  AAGAGGGCAGCAGCACTGCCCACGCAGGAGGCT-GAGCCCCAGGAGGAGGCAGAGGTGGTTCATGAGGACAACG  1324

Query 1019  AATGGGGTATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTA  1092
            |.|||||.|||||||||||.||||||||||||||||||||||||||.||.|.|||||||||.|||||...||||
Sbjct 1325  AGTGGGGCATTGAGCTGGTGTCTGAGGTTTCAGAAGAGGAACTGAAGAACTCTTCAGGTCCTGTTCCCACCTTA  1398

Query 1093  CCTGAAGGAATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGA  1166
            ||||||||.||||||||||||||||||.|.|||||.|||...||.|||||.|...||||..|||||||||||||
Sbjct 1399  CCTGAAGGCATTACAGTGGCATACACAGTCCCAAAGAAGACGGAGGATTCGGCTTCTGAAGTAACAGTGGAAGA  1472

Query 1167  TTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATG----------------------------  1212
            .||.||.||||||||||||||.||.|||||||..||||||||||||                            
Sbjct 1473  CTCCGGCGAAAGCTTGGAAGATCTTATGGCCAGGATGAAGAATATGTAGACAGTGGCTGGCTTCTGTCTTATTT  1546

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1547  TCTCTGCTTATGCTAGTCCCTTGGAATTGAACAATCGGAACTAATAAAACTTAGCGCCGCCTTAGTTGGCATGT  1620

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1621  GTATCTTCACGGAGTTGTTATGCTGTGTGGAACTAGTGGTTTCCTCCTGCTTCCGTATACAACCTAATCAGTAC  1694

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1695  CACAGCGACAGAAAGAGAAGGGGTGGACCATCCCATCCGTGTCTGTGGCCTACGGCTCTGGACGATAAATAGCA  1768

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1769  CAAATGGAGGATGGACTGACTGTGTGGCCTGGTGGCTGTGGCTGACAGGTGTCTGAGTGAATGGCTTCCTACTG  1842

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1843  GACAGTTACTCACTACTACTCTGACCAGGAGTGACTTTAAACAGCCTATAGAATAAAAACATCAATGTAAATGA  1916

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1917  GCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAGAAAAGAATAAAAACATGCCTCAGATAATTCTGGATGAA  1990

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1991  ATTGAAGCAGAATGTCTTCATTGGTAGTGTATAAACCCATGGATTGAATATTTAAGATGAAGCATAGATAAAAG  2064

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2065  CAAGCTATGTTCACGGCAGACAGAATTACGTTCAGGAAACATTGGTTATCCTCAGATTTTCATCGATCAAGGAA  2138

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2139  AAGGCATCGCTCTCTGTAGCGGAAGTGTCTGGTCACCATGTTACTGAAGAACAGACACCGTCCATACTTTGTGC  2212

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2213  ATCATAGAGTGTTCCTCCATACTTGATTCCATAAATACTGACATGCTAGCAAGGCTTGTCTGAGTGGTGGGCAA  2286

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2287  AACAACTCAAACCTGCCTCTGCAGAGGTGCACAGGTATTTATTCCCTGCAAGGGCTCCATTTCCCAAGTGTGAC  2360

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2361  CACTTCAATTGTAAACCGAGGCCTGATGTGAACTATTGGTGGTTTAACCTTGAAGATAGGAAATGTATCATTAT  2434

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2435  GAATGTCTAAATTCTATGTATTGAGAAATGTTAGTAGCAAGAGTTAAAAGTGCCATTCCCACTTGTAAAATAAA  2508

Query 1213  -----------------------------  1212
                                         
Sbjct 2509  GTTGTAAAGACTCAATGCACCTGCTTTGA  2537

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