Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
NR_049794.1
Aligned Length:
4392
Identities:
247
Gaps:
4114

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTCAGCGTCGGGCTGTCTGCCTCTCCCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAGCTGCTGCGTTCCTCAGAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGCCAGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTAGAGGATACATGGAGAAGGAAAGAGATGCCTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTGAAGAAAACTTGCTTTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAATCTACATATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCCAAAATAGTGATAACAATGTTGAAACACTACTGGGATTACTACTGTTAATGACTACCAGTGATCAAGCACC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGATTTAGAACTGTTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCTTACCTTGGTTGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACTGCTATGTGGTAGAACTACAAATTGAGCCCAAATAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTTCTCAGAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTAGGACGGCTGGGAAATAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGTGGGGTCTTTCACCTTTCAAGCTCTGCCTGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAAGCCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATATGCATTTGATTGATATGCATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTTGTTTTTAAATCCAGGGGTGTTTTGGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATTTTTTCACCAATTTATGGCTTCTTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTTTTAAAAATATATACATTTTTAAC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAG  1998

Query    1  ---------------------------------------------------------ATGGAGTCTTGCTC-TG  16
                                                                     |.|||||.|.|||| ||
Sbjct 1999  AATGTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTG  2072

Query   17  TCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCC  90
            |..||||||||||||||||.||||..||||||..||||||||||||||.|..|.||.|||||||||.|||||||
Sbjct 2073  TTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCC  2146

Query   91  TGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTG----GCTAATTTTT-GTATTTTT  159
            |||||||||||||||||||||||||||||||||..||||||||||    ||    |||||||||| ||||||||
Sbjct 2147  TGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTCCCACCACCA----TGCCCAGCTAATTTTTGGTATTTTT  2216

Query  160  AGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGG  233
            |||||||||.|.||||.|||||.||||||||.||||||||.||||||||||||||||||.||||.||||.||||
Sbjct 2217  AGTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGG  2290

Query  234  CTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCG-CCTGGCC-ATT-----------------------  282
            |||||||||.||||||.||||.|||.||||||||||||| ||||||| |||                       
Sbjct 2291  CTTCCCAAACTGCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTG  2364

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2365  TGTTATAACTCATCATAAAGATAATTTTATTTCTTTTCCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTT  2438

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2439  GCTGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATCAGCCTTTCATA  2512

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2513  ATTGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTA  2586

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2587  TTAAGAGATTTTATTATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCAC  2660

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2661  ATGATTATTAAAAATTAGTATAAAGATTTATTATTTTGATATTTTAAAATCAGGTTTATTGAGGCATAATTTAT  2734

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2735  ATATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACACAATAAA  2808

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2809  CAGGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAG  2882

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2883  CCCCAGTAAACCATGGATCTGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCA  2956

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2957  GCCTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAACATTAATGAATTTAGTATGATTGGCTGATG  3030

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3031  CCTTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAGACA  3104

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3105  GTTTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATT  3178

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3179  CACTACAAAGGCACTTAATTCTAGACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTT  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  TTGTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCTTCAAGTCAGATTAAAGTTGTATTAA  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  TAACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGAT  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  ATTTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTT  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  ATGTATATTGAGACTTGTTATAAGGCACAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATC  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  ATGTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCAAGTTAGTTGACAGTGTTGTTC  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  AAGTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTT  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  ATAATCATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTT  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  AGTGTTAGCTTGCTATATCTTTTTTCCATCCTTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATAT  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  ATGATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTTTTTATCCAATCTGATGA  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  TCTTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCT  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  ACCACTTTGGTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  ATATCAAGTATTTTAAAATTCTATTTCATCTTCTTTGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAG  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TGGTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATATTATATTATTTAA  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  CACATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTT  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  TGCTTCTACATGTTATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAA  4362

Query  283  --------------------------  282
                                      
Sbjct 4363  TAAATAATAAAAATATATGCTAACCA  4388

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.