Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_001741632.1
Aligned Length:
3542
Identities:
239
Gaps:
3272

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTGTTTTGCTGCACTCGATTCCCGCGGGCCCTGTTCTGTCTACTTTCCTTCCTTCGGCCCGGTTCCTCCCTCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCACCCTCCAGACCTCCTTTACCATCGCCTTCTTTACCAGCCAGCTTTCTCGTCCATCCCCCGTTAATTTCTTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTAGCGACTGTCCGCCGTGCGCCAGATGCTCTCTGTCGCTCGCGCAATTAATCCTTTTATCAGTCTGCTTAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTACAGGAGAGGGAACCGCGGCTCCGCTGCGCGGCTTTGGACGAGTCACTCGTCCTTCTTGAGGGAGGTTTGTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGTATCAGAGACAAAGGGGCAAATCTCTGGCCCGAGAGGGCCTGCTGGGGGATTCTAAAACCGGAGCTGCGGGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTCTGCACCAAGACTAGCCTAGGAGGAACGTTGTTTCAGCATCCGAGCTACTCTCTTTCTCCATCCCATCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCTCCCTCCATCCCATCCTCTCTCCCTGTTCCCTGTGCTGGGATGCCTTGGCCAAGGCAGAGAGCCAGCATCCG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTCCCATCCATGGGGCCACGGGGCGCTTCCGTATTGTCTGGGTGGGGGCCACCGAGAACAGATACCTGTTTCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTCCTCAAGTTGCCATCCTCCGCCCTCTGCACCACACTGCCCTTACAAGTGGGCTGTGCCTGACTATGACCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCCAGGGATACTGGGCAGCTGAGACACAGATTCCTTGGGCCTCCATGCCTTTATAAATAGGAATCATGCCAGCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCTGGGCCTGGGGAGCAAAGAGGATATCTGTCTTGACCCTAGCAGCATTATTTAGGCCACAACAGATCTACAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGTTTCAAAATAGCTTGGAGAGGACAGGTTTCCTCTTTCTTTGTAATCTTGTAGTTGCATCAAGCTACTGTCTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTCTGTGGCTCTAGAAGCATGTAAATCAGTTATTCAATCTCTCCCCAGATTCATGGACTATCTGCCATGCCCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAACACCAGGCAGAGTGCTAAGGGGACACAAAGATGAATAAGATGTGACCCCTGCTCTCTAGGATCCTGTCGCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAGATGAAGAGATAGAACATATCCATAAAAAGATAACTAATGACCGACATTGCGTGCTGCCGACACGTGTTATG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTCCTGCGGGCTACAGAAATTCAGAGGAGGAAGACAGATGACTGCAGTGTGGCAGCTGCTCCTCGGGCACTTAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGAGCTTGTTAGGATGAGGACAGAAGACTTCATAGCACAGAGGGAACTGTGACACCAGCTTTATATCACACGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TAGAAAATACCCAGTTCTGTGAGTTGACTGGGCATTCTGCATCACAAGGTGTGGCTGGGCACTGGAACAGCCGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGTCACCTGGGAGCTGACTGGGTTGGACTGTCCAGGATGGTTCACTCCTACGACAGTGGATGCTCAACTGGGGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGTCAACTGGAGCCCCCATAGGTAACATCTCCCAGCATGGCAGCTCTGTTCCAAGAGGGAGTGCCGCATGAGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCAGGAAGCAGCTGCAAGGTTCCTCATGGTTTTGCCTTACAAGACACCCAGAGTTGTTTCAGCCTCATTCTGTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTCAACAGGTCACTGTTTCAAGGAGGAGGGGAACTAGACTCCAGCTCTTGATGAAAGCAGTGATAAGGAATTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCAGTTCTAGTTGATCTACTGCAGCTTTCATGGTGTTTTTTCCATATACTGATTATATAATAGTATTTGTCACC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTTGCCAAGCGCCACGTATTACAATTAAGTGTCTCTTTATCTCACAGGCTAGATTTTCAACTTCTGGTGAGAG  1776

Query    1  --------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGC  42
                                            |..||||.|||||.|||||||||||||.|||||||     ||
Sbjct 1777  ATTGCATTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTGTGTCACCCAGGCTAGAGTGCA-----GC  1845

Query   43  GATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGA  116
            ||||||..||||||||||||||.|| |.||.|||||||||||||||.|||.||||||||||.|.|||.||||||
Sbjct 1846  GATCTCGGCTCACTGCAACCTCCGC-TCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCGGGTAACTGGGA  1918

Query  117  TTACAGGTGCCCACCACCACAG-CTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCA  189
            |||||||||||..||||    | |.||||||||||.|||||||||||||||||.||||||.|||||.|||||||
Sbjct 1919  TTACAGGTGCCTGCCAC----GCCCGGCTAATTTTCGTATTTTTAGTAGAGACAGGGTTTCACCATCTTGGCCA  1988

Query  190  GACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGA  263
            |.|||||||||||||||||||||||  ||.|||.||..|||||||.|||||||||||||||||||.|||.||||
Sbjct 1989  GGCTGGTCTCGAACTCCTGACCTCA--TGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGA  2060

Query  264  GCCACTGCGCCTGGCC-----ATT--------------------------------------------------  282
            |||||||||||.||||     |||                                                  
Sbjct 2061  GCCACTGCGCCCGGCCGAGAGATTGCATTTTATTTAACCCAATTCTTTCAGTGACATAGCTATAATAACAATAA  2134

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2135  AGATGTATTAAGTTCCTCTACCATGTGTTTGATCCCATCTAATTGAACACATGATCTTATCTCATCCCTACCCT  2208

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2209  GATAGAATAGACGTCTCATTTTCCAGATTGGGAACTGAGGCACAGAAAGATTCAGCTTTGCCCAAAAACCACAT  2282

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2283  AATGGACAAGTGGCAGAGCCAGGATTTGAACCACTTAAGAGCCTGTGTTTTTATTCTCTCTCTTCTAGTGCCAT  2356

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2357  CTCACAGTCTTGGCACCATCTTAGTAGCTTCAGGCTGCTATAAAAAGTTACCATAGGCTGGATGGCTTAAGCAA  2430

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2431  CAGACATTTATTTCTCATGCTTATGGAGGCTGGGAAGTTCAGGATCCAGGTGGAGGCTGACCCCATGTCTTTCT  2504

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2505  GGGAGGTCCAGCTGCTCCTGGACCAGATAGTGCCAACACAATACTTCTCATTGTGTTATGATTGCCTACAGCAG  2578

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2579  GTGAAGGCCTGCTTCCTGTTTTCCAGATGGCCGTCTTCTCATTGTATCTTAACATGGTGGAAGGAGAATGAGAA  2652

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2653  AGCTCGCTTGTGTCTCTTTTTATAAGGGCACTAATCCAGACGCGGAGGGCTCACCTTTACAACAGCTAAACCTG  2726

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2727  ATCACCCCCCAGAGGCCCCATCTCCAAATACCATCACATTGGGGATTGTGCTTTGACATATGAATGTGGGAGGA  2800

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2801  CACGAGCATTCAGTCCATAACAGGCACCAAGGCACCAAGTCAGTCTGCACAAGTGTGTCGCTGGGCAGAAGAAC  2874

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2875  AAAAGAGAAGGAAGAAGAAAGAACACAGTACAGAAAGTGAGTGGCGGTACCACAAAGAGTCATCAGCAAGTGCT  2948

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2949  GATGGTGGCTCCGGCCAGCACATTCCAAGCATCCTTGGGTAGCCTGATAAATGGAGTGCAGAATGTTCGGTAGC  3022

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3023  TCTGCAAGGAGTGGGAGTATTTATTGGGTCTGAGTGCTTGATGCGAAACTTTCCTCCAAAGTTCCAATTTTCTA  3096

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3097  TCCGCCAAGATAAGTGATGGAGGTTTATGGTTCATGTTGTAGCACATCCACCCAGGCCAAGGACCTACAACTCT  3170

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3171  GAATTTCTGGCCTGCCTCCTTCCAGCTAGAAGTGAATCTAGATTTACATGCCATCAGGAACAAGCATCGTCTTC  3244

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3245  CTGTTCTGTGAGTTCCTAGTTGTAGTAGGTACTGCTTTCATCCTGAGAATATCAATCTACATGCACAAGGTCCC  3318

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3319  TCTCTGTGGAGGAGTAGGTACTTAAACCCAAGATAAGTGGAAACTTTATATCCAAGGAGACAGAAAATAAAATT  3392

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3393  TCAGTATGTTTTATATTAAACAACTTATTATACTTCTATCCTTTTATGAACATAAGGTCATCAGTAGGCCAAAA  3466

Query  283  ----------------------------------------------------------------  282
                                                                            
Sbjct 3467  GTCTGAAAACAGTCTCAGTTCCTCAATGTGAATGCAAACCATTAGTGCAAAAAAAAAAAAAAAA  3530

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.