Nucleotide Global Alignment
Description
- Query:
- TRCN0000469746
- Subject:
- XR_002956669.1
- Aligned Length:
- 5555
- Identities:
- 249
- Gaps:
- 5274
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGACAAAAGATGGACAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATGGAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAATTAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCACAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTTATCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATCAAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACTAGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTCTCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGATGTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTCTTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATAGGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTCCCCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACCTTCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGTTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGCTGTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGACCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGATCCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCATTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAGTGCG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCATAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCATTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTCAGGA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCCTGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTTTTTT 3404
Query 1 ---------------------ATGGAGTCTTGCTC-TGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACT 52
|||||||.|||.|| |.||||||||||||||.||||||||||.||||||..||
Sbjct 3405 TTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTCAGCT 3478
Query 53 CACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGC 126
|||||||||||||||.|.||.|||||||||.|||||||||.|||||||||||||||||||||||||||||||.|
Sbjct 3479 CACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCC 3552
Query 127 CCACCACCACAGCT-GGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTC 199
||||||||| .||| .||||||||||.||||||||||||||||.||||||.|||||.||||||||.||||||||
Sbjct 3553 CCACCACCA-TGCTCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTC 3625
Query 200 GAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGC 273
||||||||||.|||||||..|||..||||||||||.|||||||||||||||||||.|||..||||||||.||.|
Sbjct 3626 GAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCAC 3699
Query 274 CTGGCC--------ATT--------------------------------------------------------- 282
|||.|| |||
Sbjct 3700 CTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTTTGTT 3773
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3774 CAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTACTGA 3847
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3848 CATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTACCAG 3921
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3922 CACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTTGTAA 3995
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3996 TGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTCTCTT 4069
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4070 TATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACTTCTG 4143
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4144 CATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAACACTT 4217
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4218 TTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAAGGGT 4291
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4292 TTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTCCTTT 4365
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4366 GCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTATCTA 4439
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4440 TTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAGGGGA 4513
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4514 ATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAATTGGA 4587
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4588 GAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATCACTG 4661
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4662 TCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTAAAAA 4735
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4736 TAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATGTTTC 4809
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4810 CTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTTTTAA 4883
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4884 AAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTATATG 4957
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4958 CCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTGCCAC 5031
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5032 ACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTATTCAT 5105
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5106 TCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAAAGGC 5179
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5180 AAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCAATCA 5253
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5254 GATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAACAAGG 5327
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5328 TAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTTTCCA 5401
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5402 TTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCATGTCT 5475
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5476 TATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATATTCC 5549
Query 283 ----- 282
Sbjct 5550 CTAAA 5554
