Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_002957764.1
Aligned Length:
4977
Identities:
243
Gaps:
4699

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCGAAGAGAAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTAGAAGACAACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGATTACTAGTTTTGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACT  2886

Query    1  ------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGA  44
                                          |||||||||..||||||.|||||||||||||||||.||||.|||
Sbjct 2887  CCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGA  2960

Query   45  TCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATT  118
            ||||..|||||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.||||||||
Sbjct 2961  TCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATT  3034

Query  119  ACAGGTGCCCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACC  179
            |||  .||.||  |||.||...||||||||           |||||||||||||||||.|..|.||||||.|.|
Sbjct 3035  ACA--AGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGC  3106

Query  180  ATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATT  253
            ||.||||.|||.|||||||||||||||||||||||  ||.|||||||||||||||||||||||.||||||||||
Sbjct 3107  ATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATT  3178

Query  254  ATAGGAGTGAGCCACTGCGCCTGGCC-----------ATT----------------------------------  282
            |.|||.||||||||..||||||||||           |||                                  
Sbjct 3179  ACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCC  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  CCTTGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAA  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  TAGGATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTG  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  AAGAAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAAT  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  GCTGGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATG  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  TACTAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATA  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  AGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAG  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  AGGGTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGT  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  TATTTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAG  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  TTAAAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAAT  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  ACGTTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTG  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  TGGAGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGAT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  CTGTCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTT  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TGGTTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTC  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  GTAACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATG  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  TTATGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAAT  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  AGACTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCC  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  ATCCCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAA  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  CAATTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGT  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  TTTGAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCC  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  CTATTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTT  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  TTCCAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGC  4806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4807  ATGTAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGT  4880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4881  ATGGATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTA  4954

Query  283  -------------------  282
                               
Sbjct 4955  TGAATAAAGATACTATAAA  4973

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