Nucleotide Global Alignment
Description
- Query:
- TRCN0000469746
- Subject:
- XR_002957764.1
- Aligned Length:
- 4977
- Identities:
- 243
- Gaps:
- 4699
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCGAAGAGAAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTAGAAGACAACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGATTACTAGTTTTGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGGAGGATCACCTGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTCCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AATGCCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTTCTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCTTGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAAAATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATACAAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTCTATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAAGATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTGAAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTATTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTGCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACACAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATAAAGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTGAACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTAACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTACATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAGGTAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAAGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTATAAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AAACTATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAATTTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTGTTATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATGATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAACAACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AATTTTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCTGTGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AACATGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTAGATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATGAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAATAAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCTCACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAAAATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACT 2886
Query 1 ------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGA 44
|||||||||..||||||.|||||||||||||||||.||||.|||
Sbjct 2887 CCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGA 2960
Query 45 TCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATT 118
||||..|||||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.||||||||
Sbjct 2961 TCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATT 3034
Query 119 ACAGGTGCCCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACC 179
||| .||.|| |||.||...|||||||| |||||||||||||||||.|..|.||||||.|.|
Sbjct 3035 ACA--AGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGC 3106
Query 180 ATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATT 253
||.||||.|||.||||||||||||||||||||||| ||.|||||||||||||||||||||||.||||||||||
Sbjct 3107 ATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATT 3178
Query 254 ATAGGAGTGAGCCACTGCGCCTGGCC-----------ATT---------------------------------- 282
|.|||.||||||||..|||||||||| |||
Sbjct 3179 ACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCC 3252
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3253 CCTTGGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAA 3326
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3327 TAGGATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTG 3400
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3401 AAGAAATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAAT 3474
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3475 GCTGGTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATG 3548
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3549 TACTAAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATA 3622
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3623 AGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAG 3696
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3697 AGGGTACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGT 3770
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3771 TATTTTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAG 3844
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3845 TTAAAAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAAT 3918
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3919 ACGTTAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTG 3992
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3993 TGGAGGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGAT 4066
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4067 CTGTCTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTT 4140
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4141 TGGTTTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTC 4214
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4215 GTAACTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATG 4288
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4289 TTATGTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAAT 4362
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4363 AGACTTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCC 4436
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4437 ATCCCTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAA 4510
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4511 CAATTTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGT 4584
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4585 TTTGAATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCC 4658
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4659 CTATTTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTT 4732
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4733 TTCCAGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGC 4806
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4807 ATGTAAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGT 4880
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4881 ATGGATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTA 4954
Query 283 ------------------- 282
Sbjct 4955 TGAATAAAGATACTATAAA 4973
