Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_002957766.1
Aligned Length:
4875
Identities:
243
Gaps:
4597

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAGAGGACGTGGGCGCCCGCCGAAGTACGTGTGCGCGCGCGCGTTTGCAGGAAAACGTGCATGGATTTCTTCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGTGGCAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGCCGAGCTCAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATAT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTG  2812

Query    1  --ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACC  72
              |||||||||..||||||.|||||||||||||||||.||||.|||||||..|||||||||||||||||.|.|.
Sbjct 2813  AGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCT  2886

Query   73  AGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCA--CCACCACAGCTGGCT  144
            .|||||||||||||||||||.||||||||.|||||||.|||||||||||  .||.||  |||.||...||||||
Sbjct 2887  GGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA--AGCACATGCCATCAGGCCTGGCT  2958

Query  145  AA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCT  207
            ||           |||||||||||||||||.|..|.||||||.|.|||.||||.|||.||||||||||||||||
Sbjct 2959  AATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCT  3032

Query  208  GACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCC--  279
            |||||||  ||.|||||||||||||||||||||||.|||||||||||.|||.||||||||..||||||||||  
Sbjct 3033  GACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAA  3104

Query  280  ---------ATT--------------------------------------------------------------  282
                     |||                                                              
Sbjct 3105  CTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTT  3178

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3179  TACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATA  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  ATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCT  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  AAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAA  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  AATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCT  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  ATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTA  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  CTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAA  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  TGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAAC  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  AAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGT  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  CAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAA  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  GCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACAC  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  CCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATT  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  CTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  AACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCA  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCA  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  ACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAG  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  GATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTA  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  TTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACA  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  CAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTC  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  ACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACA  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  AACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACA  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  GACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATG  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  GCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTAT  4806

Query  283  -----------------------------------------------------------------  282
                                                                             
Sbjct 4807  ATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGATACTATAAA  4871

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