Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_002957767.1
Aligned Length:
4869
Identities:
243
Gaps:
4591

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTTAGCGCTTTCCTGGCCTAGAAGTGTAAATGTCTGTGTCTGTTGGTGAGACAGAGGACGTGGGCGCCCGCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAAGCTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGCCGAGCTCAAGGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAATAATTTATTATCACGGTTGGAGACTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCATAAAGCTGATTTTTAAAATCTGGATA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTGTTTCATAGATCATTTGTGTGAATGTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGGTTGCTAGCGTTTCCCATTAATGCTTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGTATTAGTTGGTGCATGACCCTGACCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATGGCTTATTCAGGAAAGCATAATGGATT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAGATAAATGAGATTTGGTCTCTGCCCTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATACAAACACAGATTAATATGCTATTCAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATAAAACACAGAATACTTGTACTTCAGGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAGGCATGAAATATATGAATGCCTTTCTA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTTCAGAACAATCCAAGTTATTAGAAAGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCTTTACTATGCTTTGACATTATGCTCTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAACCTGCTCTATATCTACTACAGAGCTGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGATGCCCAAGAAATTTAGATTTCATAGAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTTTCATACCTCACTTAAATCAACCCAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTAATTAAAGTTAGCATTTATTTTAGCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATAAGACCTTAAGCCTTTTATATCTTTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAATGATAATATTATTTTCTTTTAATTATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTGGAGTAAATAAATAAATAAAGTAAATT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAATTTATTCTAAATAGGATACTAAAATAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATAATGAGGAAATATTAAAATGTCAAGAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCAAACCACTTTGTTACCCTATTGCTATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATCTCAGAGATTGGAAGTGTTAATTGTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAGCCCAACTGTAATGAATATATTCTAGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACTGAGCTCAGGATTCTTTTCAGAGGAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTGCTCTCAACTTTTGCAAAGTGAGATCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTCAGGAAAATCTACGTCTTGTTTGGCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCTTTTTAATTTGAATATTGCTATTGATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTATTAAAGACAAACATAAATTAGTTTTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATGATGTTTGGTAATTAGCTATATTCAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGTGTTATTTTTATCTACCCATGTCTTTT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGAATGATTTTGAAATTTCACTAAGAAAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAGCTCAGGTATTCATGGATCTCTGGAAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTCTGCTGTAAATGCATGGTACATGATCT  2738

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct 2739  CATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTTTTTTTTTTTTTTTTTTTTTGAGATGG  2812

Query    5  AGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTC  78
            |||||..||||||.|||||||||||||||||.||||.|||||||..|||||||||||||||||.|.|..|||||
Sbjct 2813  AGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTC  2886

Query   79  AAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCA--CCACCACAGCTGGCTAA----  146
            ||||||||||||||.||||||||.|||||||.|||||||||||  .||.||  |||.||...||||||||    
Sbjct 2887  AAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA--AGCACATGCCATCAGGCCTGGCTAATTTT  2958

Query  147  -------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTC  213
                   |||||||||||||||||.|..|.||||||.|.|||.||||.|||.||||||||||||||||||||||
Sbjct 2959  TATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTC  3032

Query  214  AGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCC--------  279
            |  ||.|||||||||||||||||||||||.|||||||||||.|||.||||||||..||||||||||        
Sbjct 3033  A--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGTGAGCCAACGCGCCTGGCCAACTCCTA  3104

Query  280  ---ATT--------------------------------------------------------------------  282
               |||                                                                    
Sbjct 3105  CATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAGATCTTCCTTTAGGTCATTTTTACCAT  3178

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3179  CTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTAGAGAGTACAGTAATAGGATAATTAGA  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  TTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATGATCTAAGTATGTGGACTCCTAAGTGA  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  ATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCTGGTTGATGAGTCCCATTGAAAATGAG  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  ATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAATGTTTCAGTTCAGAGTGTTCTATTTAA  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  ATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCAGTTGTTTCATTTAAAGTGTACTTTAA  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  GCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACCTTGGGCACAATCTCCACGAATGTATG  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  AGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGCTCTGCTAAAGATAGAGAAACAAGAGC  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  AGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAATAATTGGCAAATAGGAATGTCAATGA  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  AATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAATGTTTTGACTACCAAGTAAAAGCAGTT  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  GCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAAAGTAGTCCTATATATAACACCCATTC  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  ACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTGAAAATGCTTATTGCACAATTCTTCCT  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  GATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTATTTATTCCATCATTCTTTCCTAACTCA  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  AACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTTTATTTTTAATTGTGCTAGCATTTTCT  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAAGTTTTACACTTTTTTCTCCAACATAA  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  TTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAATTTTCTTAGAGCAGTTTCAGGATTAC  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  AGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTTTCTCACAGTTTCACTTGTTATTAACA  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  TCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTGTTACATTATTATTAAGTACACAGTTT  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  ACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATAGTGTATAATGTCATATATTCACCATT  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  ATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTATCCCTTCCTCTTCCCCTCACAAACCCC  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  TGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAATGTATGTATAGAGTCATACAGACTCT  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  GTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGCATCCTTCATGACTTTTCATGGCTTGA  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  TAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATATGCCACAGTTTATTTATCTATATATCT  4806

Query  283  -----------------------------------------------------------  282
                                                                       
Sbjct 4807  GTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAAGATACTATAAA  4865