Nucleotide Global Alignment

Description

Query:
TRCN0000469771
Subject:
XR_002956154.1
Aligned Length:
3168
Identities:
1128
Gaps:
2029

Alignment

Query    1  ATGGGGCTCCCAGCGCTCGAGTTCAGCGACTGCTGCCTCGATAGTCCGCACTTCCGAGAGACGCTCAAGTCGCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGCGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCAAGAATTTGTCTTCAGCGAAGCGGAAGTTTGCAGATTCCTTAAATGAATTTAAATTTCAGTGCATAGGAGAT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GCAGAAACAGATGATGAGATGTGTATAGCAAGGTCTTTGCAGGAGTTTGCCACTGTCCTCAGGAATCTTGAAGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGAACGGATACGGATGATTGAGAATGCCAGCGAGGTGCTCATCACTCCCTTGGAGAAGTTTCGAAAGGAACAGA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TCGGGGCTGCCAAGGAAGCCAAAAAGAAGTATGACAAAGAGACAGAAAAGTATTGTGGCATCTTAGAAAAACAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TTGAATTTGTCTTCCAAAAAGAAAGAATCTCAGCTTCAGGAGGCAGACAGCCAAGTGGACCTGGTCCGGCAGCA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  TTTCTATGAAGTATCCCTGGAATATGTCTTCAAGGTGCAGGAAGTCCAAGAGAGAAAGATGTTTGAGTTTGTGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGCCTCTGCTGGCCTTCCTGCAAGGACTCTTCACTTTCTATCACCATGGTTACGAACTGGCCAAGGATTTCGGG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GACTTCAAGACACAGTTAACCATTAGCATACAGAACACAAGAAATCGCTTTGAAGGCACTAGATCAGAAGTGGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  ATCACTGATGAAAAAGATGAAGGAGAATCCCCTTGAGCACAAGACCATCAGTCCCTACACCATGGAGGGATACC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TCTACGTGCAGGAGAAACGTCACTTTGGAACTTCTTGGGTGAAGCACTACTGTACATATCAACGGGATTCCAAA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  CAAATCACCATGGTACCATTTGACCAAAAGTCAGGAGGAAAAGGGGGAGAAGATGAATCAGTTATCCTCAAATC  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTGCACACGGCGGAAAACAGACTCCATTGAGAAGAGGTTTTGCTTTGATGTGGAAGCAGTAGACAGGCCAGGGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  TTATCACCATGCAAGCTTTGTCGGAAGAGGACCGGAGGCTCTGGATGGAAGCCATGGATGGCCGGGAACCTGTC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  TACAACTCGAACAAAGACAGCCAGAGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAA  1184
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ------------------------AGTGAAGGGACTGCGCAGTTGGACAGCATTGGCTTCAGCATAATCAGGAA  50

Query 1185  ATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGGGTCAACTCCAGAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct   51  ATGCATCCATGCTGTGGAAACCAGAGGGATCAACGAGCAAGGGCTGTATCGAATTGTGGGTGTCAACTCCAGAG  124

Query 1259  TGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  TGCAGAAGTTGCTGAGTGTCCTGATGGACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGG  198

Query 1333  GAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  GAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTT  272

Query 1407  TCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTC  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  273  TCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTC  346

Query 1481  ATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCAC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  ATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAATGTTGCTAACAACCAC  420

Query 1555  AAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAAC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AAGCAGAATTTGATGACGGTGGCAAACCTTGGTGTGGTGTTTGGACCCACTCTGCTGAGGCCTCAGGAAGAAAC  494

Query 1629  AGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATAT  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  495  AGTAGCAGCCATCATGGACATCAAATTTCAGAACATTGTCATTGAGATCCTAATAGAAAACCACGAAAAGATAT  568

Query 1703  TTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAG  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  569  TTAACACCGTGCCCGATATGCCTCTCACCAATGCCCAGCTGCACCTGTCTCGGAAGAAGAGCAGTGACTCCAAG  642

Query 1777  CCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  643  CCCCCGTCCTGCAGCGAGAGGCCCCTGACGCTCTTCCACACCGTTCAGTCAACAGAGAAACAGGAACAAAGGAA  716

Query 1851  CAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTAC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  717  CAGCATCATCAACTCCAGTTTGGAATCTGTCTCATCAAATCCAAACAGCATCCTTAATTCCAGCAGCAGCTTAC  790

Query 1925  AGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCAC-----------  1987
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  791  AGCCCAACATGAACTCCAGTGACCCAGACCTGGCTGTGGTCAAACCCACCCGGCCCAACTCACTGGTTCATGCG  864

Query 1988  ---------------------------------------------------------------TCCCCCCGAAT  1998
                                                                           |||||||||||
Sbjct  865  AGTTCAGCAAGCAGTTACCATGTCTACGGCATGCCAGGATACTGTTGGGAAGGTAGTATTCCGTCCCCCCGAAT  938

Query 1999  CCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  939  CCAAGCCCAACTTCACCCCTCTCGCCATCTTGGCCCATGTTCTCGGCGCCATCCAGCCCTATGCCCACCTCATC  1012

Query 2073  CACGTCCAGCGACTCATCCCCCGT--------------------------------------------------  2096
            ||||||||||||||||||||||||                                                  
Sbjct 1013  CACGTCCAGCGACTCATCCCCCGTCAGGTCTGTTGCAGGGTTTGTTTGGTTTTCTGTTGCTGCCGTTGTTCTCT  1086

Query 2097  --------------------------------------------------------------------------  2096
                                                                                      
Sbjct 1087  CATTGGCTCGGTCCTCTCTTCATGCAGTGTTCAGCCTCCTCGTCAACTTTGTTCCCTGCCATCCAAACCTGCAC  1160

Query 2097  -----------------------------------------CAGCACACCGTTCCGGAAGGCAAAAGCCTTGTA  2129
                                                     |||||||||||||||||||||||||||||||||
Sbjct 1161  TTGCTTTTTGACAGGCCAGAAGAAGCGGTACATGAAGACTCCAGCACACCGTTCCGGAAGGCAAAAGCCTTGTA  1234

Query 2130  TGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATA---------------  2188
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
Sbjct 1235  TGCCTGCAAAGCTGAACATGACTCAGAACTTTCGTTCACAGCAGGCACGGTCTTCGATAACGCAGAGTGTCCTT  1308

Query 2189  --------------ATGTTCAC--CCA-------------------------TCTCAGGAGCCTGG--------  2213
                          ||.|||||  |||                         |||||    |||||        
Sbjct 1309  CAGCTTCCACAGCCATCTTCACTGCCACACCGAAGCTCCGGGCACCTCCACCTCTCA----CCTGGGCACTTCC  1378

Query 2214  -CTGG-----------------------------TTG-------------------------------GAGGGG  2226
             ||||                             |||                               |||.|.
Sbjct 1379  ACTGGCCGCCTGACACATCTTCTCACATCTGCTCTTGCTGCCATAACCCCCTCTTTACAGAGCAGCGAGAGTGA  1452

Query 2227  ACTCTG---AACGGAAA----------------GACTGGCCT--CAT--CCCTGAGAATTACGT----GG----  2269
            .||.||   ||||||||                .|.||||||  |||  |.|||||||||||.|    ||    
Sbjct 1453  TCTTTGAAAAACGGAAATGGCATTAAAGCCCTTCAGTGGCCTCCCATTGCTCTGAGAATTACTTACAAGGCCCT  1526

Query 2270  ---------AGTTCCTC---------------------------------------------------------  2277
                     |||||||.                                                         
Sbjct 1527  CCAGGGCCCAGTTCCTGCCCCTCTGACCTCACGCCCTCACTTGACATACTACAGCCTCATGCCTTCTTCATGTT  1600

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1601  CTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTCTGTAAC  1674

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1675  TGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTTGGTTGA  1748

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1749  GTGAGTGAGAGACCTTACCCAAGCCTTCCTGTGGTCTCTAGGAGTCATGGCAGAGTTCGCTGACACTGGTCTGC  1822

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1823  TTTTAACCAGCCTTGCCAGTGACCTTTCAAATTCCCTGAGGAGCAAAAGGCCAAATTGAACCTGAAAGAAAACA  1896

Query 2278  --------------------------------------------------------------------------  2277
                                                                                      
Sbjct 1897  CCTCTCAGTGTTGACTGAGTTGCAGTAGAAAATGGACCTGACAAAACTTCACCCATCTCAGGAGCCTGGCTGGT  1970

Query 2278  ------------------------------------------------------------  2277
                                                                        
Sbjct 1971  TGGAGGGGACTCTGAACGGAAAGACTGGCCTCATCCCTGAGAATTACGTGGAGTTCCTCT  2030

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