Construct: ORF TRCN0000469771
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005677.1_s317c1
- Derived from:
- ccsbBroadEn_07836
- DNA Barcode:
- TCTGGCCGAGTACCGTGCCCTATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGAP26 (23092)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469771
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | NM_001135608.3 | 99.8% | 100% | 255A>G;1245T>G;2190C>T |
| 2 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_005268402.4 | 94.9% | 95.1% | (many diffs) |
| 3 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_005268399.5 | 94.6% | 93.5% | (many diffs) |
| 4 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_017009248.2 | 93.4% | 92.3% | (many diffs) |
| 5 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | NM_015071.6 | 93.1% | 93.2% | (many diffs) |
| 6 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | NM_001349547.2 | 89.8% | 88.6% | (many diffs) |
| 7 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_017009249.2 | 89.7% | 79.2% | (many diffs) |
| 8 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_005268398.5 | 88.2% | 87.2% | (many diffs) |
| 9 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_017009250.2 | 83.9% | 80.1% | (many diffs) |
| 10 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_017009247.2 | 83.8% | 74.8% | (many diffs) |
| 11 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944319.3 | 72.1% | (many diffs) | |
| 12 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944317.3 | 71.3% | (many diffs) | |
| 13 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742046.2 | 70.3% | (many diffs) | |
| 14 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944321.3 | 68.4% | (many diffs) | |
| 15 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944313.3 | 68.3% | (many diffs) | |
| 16 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_006714774.4 | 67.9% | 58.3% | (many diffs) |
| 17 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_011537610.3 | 67.4% | 58.6% | (many diffs) |
| 18 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XM_011537611.3 | 67% | 60.7% | (many diffs) |
| 19 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742044.2 | 66.7% | (many diffs) | |
| 20 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742045.2 | 64.7% | (many diffs) | |
| 21 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944312.2 | 63.7% | (many diffs) | |
| 22 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944323.1 | 38.9% | (many diffs) | |
| 23 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_002956155.1 | 35.8% | (many diffs) | |
| 24 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_002956154.1 | 35.6% | (many diffs) | |
| 25 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944320.3 | 24% | (many diffs) | |
| 26 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | NR_146198.2 | 23.9% | (many diffs) | |
| 27 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944315.3 | 23.7% | (many diffs) | |
| 28 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742047.2 | 23.5% | (many diffs) | |
| 29 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742048.2 | 22.8% | (many diffs) | |
| 30 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944314.3 | 22.4% | (many diffs) | |
| 31 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944311.3 | 22.2% | (many diffs) | |
| 32 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_006526268.3 | 90.5% | 96.9% | (many diffs) |
| 33 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_006526267.3 | 89.3% | 95.7% | (many diffs) |
| 34 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_006526269.3 | 85.7% | 92.2% | (many diffs) |
| 35 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | NM_175164.4 | 84.3% | 90.4% | (many diffs) |
| 36 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317987.1 | 84.2% | 87.2% | (many diffs) |
| 37 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317986.1 | 83.2% | 86.2% | (many diffs) |
| 38 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317989.1 | 81.1% | 85.8% | (many diffs) |
| 39 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317985.1 | 79.8% | 84.7% | (many diffs) |
| 40 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317988.1 | 79.7% | 82.7% | (many diffs) |
| 41 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317984.1 | 78.8% | 81.6% | (many diffs) |
| 42 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317990.1 | 74.1% | 75.7% | (many diffs) |
| 43 | mouse | 71302 | Arhgap26 | Rho GTPase activating prote... | XM_017317991.1 | 45.4% | 40.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2343
- ORF length:
- 2277
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg gctcccagcg ctcgagttca gcgactgctg cctcgatagt ccgcacttcc 121 gagagacgct caagtcgcac gaagcagagc tggacaagac caacaaattc atcaaggagc 181 tcatcaagga cgggaagtca ctcataagcg cgctcaagaa tttgtcttca gcgaagcgga 241 agtttgcaga ttccttaaat gaatttaaat ttcagtgcat aggagatgca gaaacagatg 301 atgagatgtg tatagcaagg tctttgcagg agtttgccac tgtcctcagg aatcttgaag 361 atgaacggat acggatgatt gagaatgcca gcgaggtgct catcactccc ttggagaagt 421 ttcgaaagga acagatcggg gctgccaagg aagccaaaaa gaagtatgac aaagagacag 481 aaaagtattg tggcatctta gaaaaacact tgaatttgtc ttccaaaaag aaagaatctc 541 agcttcagga ggcagacagc caagtggacc tggtccggca gcatttctat gaagtatccc 601 tggaatatgt cttcaaggtg caggaagtcc aagagagaaa gatgtttgag tttgtggagc 661 ctctgctggc cttcctgcaa ggactcttca ctttctatca ccatggttac gaactggcca 721 aggatttcgg ggacttcaag acacagttaa ccattagcat acagaacaca agaaatcgct 781 ttgaaggcac tagatcagaa gtggaatcac tgatgaaaaa gatgaaggag aatccccttg 841 agcacaagac catcagtccc tacaccatgg agggatacct ctacgtgcag gagaaacgtc 901 actttggaac ttcttgggtg aagcactact gtacatatca acgggattcc aaacaaatca 961 ccatggtacc atttgaccaa aagtcaggag gaaaaggggg agaagatgaa tcagttatcc 1021 tcaaatcctg cacacggcgg aaaacagact ccattgagaa gaggttttgc tttgatgtgg 1081 aagcagtaga caggccaggg gttatcacca tgcaagcttt gtcggaagag gaccggaggc 1141 tctggatgga agccatggat ggccgggaac ctgtctacaa ctcgaacaaa gacagccaga 1201 gtgaagggac tgcgcagttg gacagcattg gcttcagcat aatcaggaaa tgcatccatg 1261 ctgtggaaac cagagggatc aacgagcaag ggctgtatcg aattgtgggg gtcaactcca 1321 gagtgcagaa gttgctgagt gtcctgatgg accccaagac tgcttctgag acagaaacag 1381 atatctgtgc tgaatgggag ataaagacca tcactagtgc tctgaagacc tacctaagaa 1441 tgcttccagg accactcatg atgtaccagt ttcaaagaag tttcatcaaa gcagcaaaac 1501 tggagaacca ggagtctcgg gtctctgaaa tccacagcct tgttcatcgg ctcccagaga 1561 aaaatcggca gatgttacag ctgctcatga accacttggc aaatgttgct aacaaccaca 1621 agcagaattt gatgacggtg gcaaaccttg gtgtggtgtt tggacccact ctgctgaggc 1681 ctcaggaaga aacagtagca gccatcatgg acatcaaatt tcagaacatt gtcattgaga 1741 tcctaataga aaaccacgaa aagatattta acaccgtgcc cgatatgcct ctcaccaatg 1801 cccagctgca cctgtctcgg aagaagagca gtgactccaa gcccccgtcc tgcagcgaga 1861 ggcccctgac gctcttccac accgttcagt caacagagaa acaggaacaa aggaacagca 1921 tcatcaactc cagtttGGAA TCTGTCTCAT CAAATCCAAA CAGCATCCTT AATTCCAGCA 1981 GCAGCTTACA GCCCAACATG AACTCCAGTG ACCCAGACCT GGCTGTGGTC AAACCCACCC 2041 GGCCCAACTC ACTCCCCCCG AATCCAAGCC CAACTTCACC CCTCTCGCCA TCTTGGCCCA 2101 TGTTCTCGGC GCCATCCAGC CCTATGCCCA CCTCATCCAC GTCCAGCGAC TCATCCCCCG 2161 TCAGCACACC GTTCCGGAAG GCAAAAGCCT TGTATGCCTG CAAAGCTGAA CATGACTCAG 2221 AACTTTCGTT CACAGCAGGC ACGGTCTTCG ATAATGTTCA CCCATCTCAG GAGCCTGGCT 2281 GGTTGGAGGG GACTCTGAAC GGAAAGACTG GCCTCATCCC TGAGAATTAC GTGGAGTTCC 2341 TCTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 2401 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 2461 GGCTTTATAT ATCTTGTGGA AAGGACGATC TGGCCGAGTA CCGTGCCCTA TTACGCGTTA 2521 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt