Nucleotide Global Alignment

Description

Query:
TRCN0000470067
Subject:
XM_017314987.1
Aligned Length:
3583
Identities:
1127
Gaps:
2330

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTGGGCTCAGATGACTTCTTCTATGTTGGTGGAAGCCCAAGTACCGCAGACTTGCCAGGTTCACCTGTGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAACAACTTCATGGGCTGCCTTAAAGAGGTTGTTTATAAGAATAATGACATCCGTCTAGAGCTGTCTCGCTTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGGATTGGAGACACCAAGATGAAAATCTATGGTGAAGTTGTGTTCAAGTGTGAGAACGTGGCCACACTGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCATCAACTTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACACCAAACGTATGGGCTCCATTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTTGACTTTCGCACCACTGAGCCCAACGGCCTGATTCTCTTCACTCACGGGAAGCCTCAAGAAAGGAAAGATG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCGGAGCCAAAAGAACACAAAAGTTGACTTCTTTGCTGTGGAACTTCTTGATGGCAACCTGTATTTGCTGCTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACATGGGCTCTGGCACCATCAAAGTGAAGGCCACTCAGAAGAAGGCCAATGATGGGGAATGGTACCACGTGGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TATTCAGCGTGATGGCAGATCAGGTACCATATCTGTGAACAGCAGGCGCACGCCATTCACCGCCAGTGGGGAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGAAATTCTCGACCTGGAGGGGGACATGTATCTGGGCGGGCTGCCAGAGAACCGAGCTGGCCTCATCCTCCCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACGGAGCTCTGGACCGCCATGCTCAACTACGGTTACGTGGGCTGCATCCGCGACCTGTTCATCGATGGGCGCAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAAGAACATCCGGCAGCTGGCGGAGATGCAGAACGCAGCAGGCGTCAAGTCCTCCTGTTCACGCATGAGCGCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGCAGTGTGACAGCTACCCCTGCAAGAACAACGCGGTGTGCAAGGACGGCTGGAACCGCTTCATCTGCGACTGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACTGGCACCGGCTACTGGGGGAGAACCTGCGAAAGAGAGGCATCTATCCTGAGCTATGACGGCAGCATGTACAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAAGGTCATCATGCCCATGGTGATGCACACGGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCACAGCGAGCCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATGGGCTACTGGTAGCCACAACCTCCAGGGATTCTGCAGATACACTGCGTCTAGAGTTGGATGGTGGGCGTGTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGCTCATGGTTAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGGACCTGAGACCCTGTATGCAGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCAGAAGCTCAATGACAATGAGTGGCACACCGTCCGGGTAGTGCGGAGAGGAAAAAGCCTTAAGCTAACAGTGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGATGATGTGGCTGAGGGGACAATGGTGGGCGACCACACCCGCCTGGAATTCCACAATATTGAAACTGGTATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATGACTGAGAAGCGTTACATCTCTGTGGTCCCCTCCAGTTTCATTGGCCATCTACAGAGCCTCATGTTCAATGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTTACTGTACATTGATTTGTGCAAAAATGGCGACATCGACTACTGTGAACTGAAGGCTCGCTTTGGACTGAGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACATCATCGCCGACCCTGTCACTTTTAAGACCAAGAGCAGCTACCTGACCCTCGCCACCCTACAGGCTTACACC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCCATGCACCTCTTCTTCCAGTTCAAGACCACTTCAGCTGATGGCTTCATTCTCTTCAATAGCGGAGATGGCAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGATTTTATTGCAGTTGAGCTGGTCAAGGGGTACATACACTATGTGTTTGATCTCGGCAATGGTCCCAATGTGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCAAAGGCAACAGTGACCGCCCCCTGAATGACAACCAGTGGCACAACGTGGTCATCACCAGGGACAGCAGTAAC  1776

Query    1  ATGCAC---CTGA-----GAATCCACGCGAG---------------ACGGAGCC------CT------------  33
            |..|||   ||||     ||..|||.|..||               |.||.|||      ||            
Sbjct 1777  ACCCACAGTCTGAAGGTGGACACCAAGGTAGTCACTCAGGTCATCAATGGTGCCAAAAATCTGGATTTGAAAGG  1850

Query   34  ---CCTC------GCCGGC--------CGGCCTGGAC--------------GCTTGGGATCTGGTTCCTGTTCT  76
               ||||      ||.|||        .|||.||.||              |||||     |||  ||   ||.
Sbjct 1851  TGACCTCTATATGGCTGGCTTAGCCCAGGGCATGTACAGCAACCTTCCCAAGCTTG-----TGG--CC---TCC  1914

Query   77  GGGGATGTATCGTCAG-----------CTCTGTATGGAGTTCTTCTAATGTA--GCTTCCT--CCTCCTCCAC-  134
            .||||||.|| .||||           |||||  ||||.||    .||||.|  .||.|||  .|||.||.|| 
Sbjct 1915  AGGGATGGAT-TTCAGGGCTGCCTGGCCTCTG--TGGACTT----GAATGGACGCCTGCCTGATCTCATCAACG  1981

Query  135  ---CTCTTCC---------------TCG----------------------------------CCGG---GGTCT  153
               ||| |||               |||                                  ||.|   ||.|.
Sbjct 1982  ATGCTC-TCCACAGGAGTGGACAGATCGAGCGAGGCTGTGAAGTTGCGTTGACCAAAGCTGACCTGCAAGGACC  2054

Query  154  CA-------CTCTCAGCACGA-----GCACCA---------TTTCCATGGCAGC-------AAGCATCACTCAG  199
            ||       ||.||||.|.||     ||.|||         |||.||| |||||       |.|..|||| |.|
Sbjct 2055  CAGTACAACCTGTCAGGAGGATTCATGCGCCAACCAGGGAGTTTGCAT-GCAGCAGTGGGAAGGTTTCAC-CTG  2126

Query  200  TGCCTATTTCTATCTATCGTTCC-------CCTGTTTCCCTTCGAGGAGGAC----------ACGCTGGCGCTA  256
            ||.||             |.|||       |.|.||   ||    ||| .||          ||.||||.||.|
Sbjct 2127  TGACT-------------GCTCCATGACATCATATT---CT----GGA-AACCAGTGCAATGACCCTGGTGCAA  2179

Query  257  CGTACATCTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCT  330
            |.|||||||||||||||||.|||||.||.||||||||.|||||||||||.||||||||.||||||||.||.|||
Sbjct 2180  CATACATCTTTGGGAAAAGCGGTGGCCTCATCCTCTATACCTGGCCAGCAAATGACAGACCCAGCACACGCTCT  2253

Query  331  GACCGCCTTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACT  404
            |||||.||.|||||||||||||||||.||||||||||||||.|||||.||.|||||.|||||.||.||.|||||
Sbjct 2254  GACCGTCTCGCCGTGGGCTTCAGCACTACTGTGAAGGATGGTATCTTAGTACGCATTGACAGCGCCCCTGGACT  2327

Query  405  TGGTGACTTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCT  478
            |||.||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 2328  TGGCGACTTCCTCCAGCTTCACATAGAACAAGGGAAAATTGGAGTTGTCTTCAATATTGGCACAGTTGACATCT  2401

Query  479  CCATCAAAGAGGAGAGAACCCCTGTAAATGACGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAAC  552
            ||||||||||.||||||||.|||||.|||||.|||||||||||.||.||.||||||||||||||.||.||.||.
Sbjct 2402  CCATCAAAGAAGAGAGAACTCCTGTCAATGATGGCAAATACCACGTTGTGCGCTTCACCAGGAATGGGGGAAAT  2475

Query  553  GCCACCCTGCAGGTGGACAACTGGCCAGTGAATGAACATTATCCTACAGGCCGGCAGTTAACCATCTTCAACAC  626
            ||.||.||.||||||||||||||||||||||||||.||.||||||||||||||||||.||||||||||||||||
Sbjct 2476  GCTACACTTCAGGTGGACAACTGGCCAGTGAATGAGCACTATCCTACAGGCCGGCAGCTAACCATCTTCAACAC  2549

Query  627  TCAGGCGCAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCTATTATG  700
            .|||||||||||||||||.||.|||||||||||||||||.|||||||||||.||||||||||||||||||||||
Sbjct 2550  CCAGGCGCAAATAGCCATCGGAGGAAAGGACAAAGGACGTCTCTTCCAAGGTCAACTCTCTGGGCTCTATTATG  2623

Query  701  ATGGTTTGAAAGTACTGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGTTCGGCTGGTT  774
            |||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||.|||||.||.
Sbjct 2624  ATGGTTTGAAAGTACTGAACATGGCAGCTGAGAACAACCCTAATATTAAAATCAATGGAAGTGTCCGGCTAGTG  2697

Query  775  GGAGAAGTCCCATCAATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCTACTACTGTCATGGA  848
            |||||||||||||||.|.|..||||||||||||||.||.|||||||||||.|||||||||||.||.||||||||
Sbjct 2698  GGAGAAGTCCCATCAGTCTCAGGAACAACACAGACAACGTCCATGCCACCTGAAATGTCTACCACCGTCATGGA  2771

Query  849  AACCACTACTACAATGGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCATTCAGCCAACATCAGATG  922
            ||||||.||.||.|||||.||.|||||.|||||.|||||.|||||||||||||||||||||||.||.|||||||
Sbjct 2772  AACCACCACCACCATGGCTACGACCACCACCCGAAAGAACCGCTCTACAGCCAGCATTCAGCCCACGTCAGATG  2845

Query  923  ATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATGTGAGCCGAGTACAGGTAGGT--  994
            ||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.|||||||||||||  
Sbjct 2846  ATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAGACTTTGTCGAATGTGAACCAAGTACAGGTAGGTCA  2919

Query  995  --------------------------------------------------------------------------  994
                                                                                      
Sbjct 2920  GATAAGAGTCTTTCCACTTCAATCTTCGAAGGTGGCTACAAAGCACATGCGCCCAAGTGGGAATCCAAGGACTT  2993

Query  995  --------------------------------------------------------------------------  994
                                                                                      
Sbjct 2994  TAGACCTAACAAAGTCTCGGAAACTAGTAGAACTACAACCACCTCTTTGTCCCCTGAGCTGATCCGCTTCACAG  3067

Query  995  --------------------------------------------------------------------------  994
                                                                                      
Sbjct 3068  CGTCCTCCTCGTCTGGGATGGTGCCCAAATTGCCAGCTGGCAAAATGAATAACCGTGATCTCAAACCCCAGCCT  3141

Query  995  --------------------------------------------------------------------------  994
                                                                                      
Sbjct 3142  GATATAGTCTTGCTTCCGTTGCCCACTGCCTATGAGCTAGACAGCACCAAACTGAAGAGCCCACTAATTACTTC  3215

Query  995  -----------------------CAGCAAACCCCACGGAGCCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGG  1045
                                   |||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 3216  CCCCATGTTCCGTAATGTGCCCACAGCAAACCCCACGGAGCCAGGAATCAGACGGGTTCCGGGGGCCTCAGAGG  3289

Query 1046  TGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATC  1119
            |||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3290  TGATCCGGGAGTCCAGCAGTACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATC  3363

Query 1120  CTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGCGGAACTACAT  1193
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 3364  CTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGAGGAACTACAT  3437

Query 1194  CAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAGCAG--AGCTCGAAGAGCGGCCACAAGAA  1265
            |||||||||.|||||||||||||||||||||||||||||||||||  ||  |||||.|||||||||||.|||||
Sbjct 3438  CAGCAACTCGGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCA--AGCCAGCTCCAAGAGCGGCCATAAGAA  3509

Query 1266  ACAGAAAAACAAGGACAGGGAGCATTACGTG  1296
            |||||||||||||||||.||||.||||.|||
Sbjct 3510  ACAGAAAAACAAGGACAAGGAGTATTATGTG  3540

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.