Nucleotide Global Alignment

Description

Query:
TRCN0000470126
Subject:
XM_006520091.4
Aligned Length:
2086
Identities:
1861
Gaps:
5

Alignment

Query    1  ATGAGTGGTGCAGCTTTGGGACTTGAGATTGTTTTTGTCTTTTTTCTGGCATTATTTCTGCTTCATCGATATGG  74
            |||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.||.||.|||||.|||||
Sbjct    1  ATGAGTGGTGCGGCTTTAGGACTTGAGATTGTTTTTGTCTTTTTTCTGGCATTGTTCCTCCTGCATCGCTATGG  74

Query   75  AGACTTTAAGAAACAGCATAGACTTGTGATTATTGGAACACTGCTTGCTTGGTATCTCTGCTTTCTTATTGTCT  148
            ||||||||||||||||||.|||||.||.||.||.||.|||||||||||||||||||||||||||||.|||||||
Sbjct   75  AGACTTTAAGAAACAGCACAGACTGGTAATCATCGGCACACTGCTTGCTTGGTATCTCTGCTTTCTCATTGTCT  148

Query  149  TCATACTGCCTCTGGATGTTAGTACGACAATATACAACCGGTGCAAGCATGCTGCTGCAAATTCAAGCCCTCCT  222
            ||||||||||.||||||||.||||||||||||||.|||||.||||.||||||||||||||||||.|||||||||
Sbjct  149  TCATACTGCCGCTGGATGTCAGTACGACAATATATAACCGATGCAGGCATGCTGCTGCAAATTCCAGCCCTCCT  222

Query  223  GAGAATAGCAACATTACAGGATTGTACGCAACTGCTAAC-CCTGTTCCAAGCCAGCATCCTTGTTTCAAGCCAT  295
            ||.||||.||||.||||.|||.||.|.|||.||| |.|| ||.|.||||||.||||||||.|||||||||||.|
Sbjct  223  GAAAATACCAACGTTACGGGACTGGATGCATCTG-TCACTCCAGCTCCAAGACAGCATCCATGTTTCAAGCCGT  295

Query  296  GGAGTTACATTCCTGATGGAATCATGCCAATTTTCTGGAGGGTAGTGTATTGGACGTCACAATTTTTAACATGG  369
            |||||||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||.|||||.||.|||
Sbjct  296  GGAGTTACATTCCAGATGGAATCATGCCAATTTTCTGGAGGGTAGTTTATTGGACATCACAGTTTTTGACGTGG  369

Query  370  ATTCTCTTACCTTTTATGCAGTCATATGCAAGATCAGGAGGGTTTTCCATCACTGGAAAGATCAAAACTGCACT  443
            ||.||.|||||||||||||||||||||||||||||.|||||.||.||||||||.||.|||||||||||.||.||
Sbjct  370  ATCCTGTTACCTTTTATGCAGTCATATGCAAGATCTGGAGGTTTCTCCATCACCGGCAAGATCAAAACAGCCCT  443

Query  444  AATTGAGAATGCAATCTACTATGGCACCTATTTGCTGATTTTTGGAGCATTTTTAATTTATGTAGCTGTAAACC  517
            .|||||||||||.|||||.||.|||||.||.||||||||.||||||||||||.|.|||||.|||||||||||||
Sbjct  444  GATTGAGAATGCCATCTATTACGGCACTTACTTGCTGATATTTGGAGCATTTCTGATTTACGTAGCTGTAAACC  517

Query  518  CACATTTACATTTAGAATGGAACCAGCTTCAGACAATTGGGATAGCTGCTGCAAATACATGGGGTCTGTTTCTT  591
            |||.|||.|||||||||||||||||.||||||||.|||||||||||||||||.||.|||||||||||||||||.
Sbjct  518  CACGTTTGCATTTAGAATGGAACCAACTTCAGACGATTGGGATAGCTGCTGCCAACACATGGGGTCTGTTTCTC  591

Query  592  CTTGTGTTGTTGTTGGGGTATGGCTTGGTGGAAATTCCTCGATCATACTGGAATGGAGCAAAAAGGGGTTATCT  665
            ||||||||.||.|||||||||||.|||||||||||||||||.|||||||||||||||||.||||||||||||||
Sbjct  592  CTTGTGTTATTATTGGGGTATGGATTGGTGGAAATTCCTCGGTCATACTGGAATGGAGCCAAAAGGGGTTATCT  665

Query  666  ACTTATGAAAACGTATTTTAAGGCAGCCAAACTGATGACAGAGAAAGCAGATGCAGAAGAGAATTTGGAAGATG  739
            .||||||||.||.||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct  666  TCTTATGAAGACTTACTTTAAGGCAGCCAAACTGATGACAGAGAAGGCAGATGCAGAAGAGAATTTGGAGGATG  739

Query  740  CCATGGAGGAGGTTCGTAAAGTGAATGAAAGCATCAAGTATAATCACCCATTGAGAAAATGTGTTGATACAATA  813
            ..||||||||||||||||||||.|||||.|||||||||||.||.||||||.||||.||.|||||.||.||||||
Sbjct  740  TAATGGAGGAGGTTCGTAAAGTAAATGAGAGCATCAAGTACAACCACCCACTGAGGAAGTGTGTAGACACAATA  813

Query  814  CTTAAAAAGTGCCCTACAGAGTATCAGGAAAAAATGGGTAGGAACATGGATGATTATGAAGATTTTGATGAAAA  887
            ||||||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||.|||||
Sbjct  814  CTTAAAAAGTGCCCTACAGATTATCAGGAAAAGATGGGTAGGAATATGGATGACTATGAAGATTTTGACGAAAA  887

Query  888  GCATAGTATCTATCCAAGTGAAAAAAGTCTGGTAAAACTTCATAAACAGGTGATTTATTCAGTTCAGAGACACC  961
            ||..|.||.|||.|||||||||||||||.||||||||.|.||||||||||||||||||||||||||.||.||||
Sbjct  888  GCGCAATACCTACCCAAGTGAAAAAAGTTTGGTAAAATTGCATAAACAGGTGATTTATTCAGTTCAAAGGCACC  961

Query  962  GTCGAACTCAAGTACAATGGCAGATTCTTTTGGAACAAGCATTTTATCTAGAAGATGTAGCAAAAAATGAAACT  1035
            ||||.||||||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||
Sbjct  962  GTCGGACTCAAGTGCAATGGCAGATTCTTTTGGAACAGGCATTCTATCTAGAAGATGTAGCAAAAAATGAAACT  1035

Query 1036  AGTGCTACTCATCAGTTTGTTCACACCTTTCAATCGCCAGAGCCAGAAAATCGATTTATCCAATATTTTTATAA  1109
            ||.||.|||||.||||||||||||||||||||.||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1036  AGCGCAACTCACCAGTTTGTTCACACCTTTCAGTCACCTGAGCCAGAAAATCGATTTATCCAATATTTTTATAA  1109

Query 1110  TCCTACATTTGAATGGTACTGGGAATGTCTTTTGCGACCATGGTTTTACAAGATACTTGCTGTGGTTCTGTCCA  1183
            ||||||..||||.||||||||||||||.||||||||.|||||||||.|||.||..||||||||||||.||||.|
Sbjct 1110  TCCTACTGTTGAGTGGTACTGGGAATGCCTTTTGCGTCCATGGTTTCACAGGACCCTTGCTGTGGTTTTGTCTA  1183

Query 1184  TCTTCTCTGTGATTGTTGTGTGGTCAGAGTGCACATTCTTTAGCACTACTCCTGTCTTATCCCTCTTTGCGGTC  1257
            |||||||||||||||||||||||||||||||.||.|||||||||||.|||||||||||||||||.|||||.||.
Sbjct 1184  TCTTCTCTGTGATTGTTGTGTGGTCAGAGTGTACCTTCTTTAGCACAACTCCTGTCTTATCCCTTTTTGCAGTA  1257

Query 1258  TTCATACAGCTGGCAGAAAAAACATATAATTATATTTATATCGAGATTGCCTGCTTCCTTTCCATCTTCTTCCT  1331
            |||||||||||||||||||.||||||.|||||.||||||||.||||||||.|||||||||||||||||||||.|
Sbjct 1258  TTCATACAGCTGGCAGAAAGAACATACAATTACATTTATATTGAGATTGCTTGCTTCCTTTCCATCTTCTTCTT  1331

Query 1332  AAGTATCTGTGTTTATTCTACTGTGTTCAGGATTCGTGTATTTAACTATTATTATTTGGCCTCACATCACCAGA  1405
            |||.|||||||||||.|||||||||||||||||.||.||.||||||||.||.||..||||||||||.||.||||
Sbjct 1332  AAGCATCTGTGTTTACTCTACTGTGTTCAGGATCCGCGTGTTTAACTACTACTACCTGGCCTCACACCATCAGA  1405

Query 1406  CTGATGCTTATAGCCTTCTTTTCAGTGGCATGCTATTTTGCCGTTTGACACCTCCTTTATGTCTTAATTTCTTG  1479
            |.|||||||||||||||||.||||||||||||.||||||||||||||||.|||||||||||||||||.||||||
Sbjct 1406  CCGATGCTTATAGCCTTCTGTTCAGTGGCATGTTATTTTGCCGTTTGACTCCTCCTTTATGTCTTAACTTCTTG  1479

Query 1480  GGTTTGACCCATATGGATTCATCTATCTCTCACAAGAATACTCAACCAACTGCTTATACATCTATTATGGGTTC  1553
            ||.||||||||||||||||||||.|||||.|||.|||||||.||.||||||||.|||||||||||.||||||||
Sbjct 1480  GGATTGACCCATATGGATTCATCCATCTCCCACCAGAATACCCAGCCAACTGCATATACATCTATCATGGGTTC  1553

Query 1554  CATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGGTGGTAATTCTCTGCATTG  1627
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|
Sbjct 1554  CATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGGTAGTAATTCTCTGCATCG  1627

Query 1628  CTACTTATTTTAGTTTGGGAACCCGTTGTTTGAATCTGCTCGGTTTCCAGCAGTTTATGGGAGATGATGATATG  1701
            ||||.||||||||||||||.||||||||||||||||||||.||||||||||||||.|||||||||.||||||||
Sbjct 1628  CTACGTATTTTAGTTTGGGCACCCGTTGTTTGAATCTGCTTGGTTTCCAGCAGTTCATGGGAGATAATGATATG  1701

Query 1702  ACATCAGACTTAGTTAATGAAGGAAAAGAATTAATCAGAAAAGAGAAGAGAAAAAGGCAAAGGCAAGAAGAAGG  1775
            ||||||||..|||||.|||||||||||||||||||||||..||||||.||||||||||||||.|||||.|||||
Sbjct 1702  ACATCAGATCTAGTTGATGAAGGAAAAGAATTAATCAGACGAGAGAAAAGAAAAAGGCAAAGACAAGAGGAAGG  1775

Query 1776  TGAAAATCGAAGAAGAGAATGGAAAGAACGTTATGGACACAATAGAGAAGATTCCACTAGGAACAGAAATATTC  1849
            |||||||.||||||||||.|||||||||||||||||||||||.|||||.|||||||||.||||||||||..|.|
Sbjct 1776  TGAAAATAGAAGAAGAGAGTGGAAAGAACGTTATGGACACAACAGAGAGGATTCCACTCGGAACAGAAACGTCC  1849

Query 1850  ATACTGACCCCAAAGAGTCAAACTTCTCAGATGTTAATACCAACCGTTCTGCATTCAAATATACCAGGGCTAAT  1923
            ||.|||||||||||||||||||.||||||||....|.|||||||.|.|   |||.||||||.||||||||||||
Sbjct 1850  ATCCTGACCCCAAAGAGTCAAATTTCTCAGACACGACTACCAACTGGT---CATCCAAATACACCAGGGCTAAT  1920

Query 1924  AACAGGACTGAAAGGGACCGGATAGAACTTCTCCAAGATGCAGAACCTTTGGATTTTAATGCAGAAACATTCAC  1997
            ||||||||||||||.|||||.||||||||||||||.|||||.||.|||.|||||||||||||||||||.||.||
Sbjct 1921  AACAGGACTGAAAGAGACCGAATAGAACTTCTCCAGGATGCTGAGCCTCTGGATTTTAATGCAGAAACGTTTAC  1994

Query 1998  TGATGATCCTCTTGAATCTGAATCAGGAAGGTATCAGCCTGGTGGACGATATCTCTCGATGTCTCGCAGTGACA  2071
            .|||||..||||.|||.||||.||||||||||||||.||||||||.|||||||||||.||||||..||||...|
Sbjct 1995  GGATGAATCTCTGGAACCTGAGTCAGGAAGGTATCAACCTGGTGGGCGATATCTCTCCATGTCTTCCAGTATAA  2068

Query 2072  TATTTAATGATGTT  2085
            |||||.|.|||.|.
Sbjct 2069  TATTTGAAGATATC  2082

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.