Nucleotide Global Alignment

Description

Query:
TRCN0000470281
Subject:
XM_017317728.1
Aligned Length:
2971
Identities:
840
Gaps:
2024

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCCCTCATTGCGCAAAAGAGTGAAAATACAGGCCGAGAATGCAGAACCCAAAGATGAATGCTCTTTCTTCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAGTTGTCATCTGGCTCTGAAGAAGATAACAAGGAAGACAGCATTTGGGAACCTCAGAAGAAAGTTCCCAGAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCGTAGACAGCCTGCTTCCAAGGGATCCAAACGGAAGCAGGGGCCCAGGGCGAAGAAGAGCTCCCAACAGGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATGACGAATCAAAAGATGTGGCTGTTAAGGAGGAGTTGAACAGCCCGGTGGCTATTGTTGATGCAGATTTGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAGAAAAGCCACAAGTTGCAGACGACAAAGACTCTTAAAACTGCAGCAAAAAAGCAAAAAAAACCAGTTCCGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGCCAAAAAAAGGTTGAAAGTTGATGAGGAAACCAGCCAGGCCAGCCCCTTGGAGGGTGGAGGCAGTAATGTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGACCCCCTCAACAAGCGCCTGTGGAAATGTGTGCAAGAAGGAGGAGAGCGAGGACAGCTTCACGTTTGGGCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTCCCCGGTAAAGAGGATCAGGACTGAGTCATGTCCTCAGGGGAGGCCGGCCAGGGTTCCCGACGGTGTCAGCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACATTAAAGAGGAGGTAGAAATGAACTGGGACGTAGTACAGGTTTTATCTGAGAGAACTAATATTGAACCTTGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTTTGTGCCAACATCATACGCCTCTTTAATGATGACAACACAATCCCCTTCATTGTACGCTATCGAAAAGAGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CATTAATAACCTTGATGCTGATTTCTTAAGAGAAGTTCGTCAAACCCTAGATGAGCTACGGGATGTTGCCAAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGTTCATAGTAGAATCCAGAAAATTAAGAAGGAGGGGAAAATGTCGGAGTGCTTGCTGCAAGCCTTGTTGAAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGTAAAACGTTCGAGGAACTAGAGCATGTGTCTGCTCCATATAAAATGGGGAGCAAGGGCACGAAAGCCCAGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGCAAAACAGTTGGGGCTAGAAGGAGCAGCGTGGACCCTGCTGGAGAACCCGGGGCAGCTCAACCTGCTGTCTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACATCAAGCCTGATGTTAAAGGCCTTTCTGAGCTCAACGATATCGAAACAGGAGTACAACATATTTTAGCAGAC  1110

Query    1  ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGACATGTTTGTATCCAGTC  74
            ||||||||||||||||||||.|||||||||||.||||||..||||||..|..|.|||.|..|||||||||||||
Sbjct 1111  ATGATTGCTAAAGACAAAGATACGCTTGACTTTATTCGGGGCTTGTGTAAACATAGATACATTTGTATCCAGTC  1184

Query   75  ATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCTGCTCTACCAGCATTTTT  148
            ||||||.||||||||||||||||||||.|||||||||||.||.|||||||||||||.|||.||||||.||||.|
Sbjct 1185  ATCTCTTGCAAAAGTATCCTCAAAAAAAGTAAATGAGAAGGAAGTTGATAAGTTTCAGCTTTACCAGAATTTCT  1258

Query  149  CCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAAATTTGAAGGTACTGACG  222
            |||||||||||||.|.|||.||||||||.|||||||||||.||||||||.|||||.|||||||||.|.|||||.
Sbjct 1259  CCTGCAACATAAGGACCATCCACCATCACCAGATTCTGGCCATTAACCGAGGAGAGAATTTGAAGATCCTGACC  1332

Query  223  GTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAAAACAGGTGGAGACCACG  296
            ||.||.|||||.||||||||||||||.|||.|.|||||||||.|.|||||.||.||.|||||||||||.|||||
Sbjct 1333  GTCAAAGTCAACATTTCTGATGGAGTAAAGAACGAATTCTGTCGATGGTGTATACAGAACAGGTGGAGGCCACG  1406

Query  297  TAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTTTAAACGCCTTATTTATC  370
            |.||||||||.||||||||||.||||||||||||.|||||||||||.||||.||||||||.|||||.|||..||
Sbjct 1407  TGGCTTTGCACGGCCAGAGTTGATGAAGATCTTACATAATTCACTGGATGACTCCTTTAAGCGCCTCATTGTTC  1480

Query  371  CTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAGTAATGATGTTTGGACGG  444
            ||||.|||||||||||.||||||||||||||.||||||||||||||||||.|||||||||||||||||||||.|
Sbjct 1481  CTCTCCTCTGTAGAGAGTTCAGAGCCAAACTGACATCAGATGCAGAGAAGCAATCAGTAATGATGTTTGGACAG  1554

Query  445  AACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTGGATCCTGGTTATAAACA  518
            |||||.||.|||||||||||||||||.|||||.|||||.||||||.|.||||||||.||||||||.||.|||||
Sbjct 1555  AACCTCCGCCAGCTCCTTTTAACAAGTCCTGTGCCAGGCCGCACCCTGATGGGAGTAGATCCTGGCTACAAACA  1628

Query  519  TGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGTTTACTTGCATTGTGGAC  592
            |||.||||||.||||.||.||||||||||||||||||||.|||||.||.|||||||||||||||||.|||||||
Sbjct 1629  TGGATGCAAACTAGCCATCATTTCTCCTACTAGTCAGATCCTTCACACGGATGTGGTTTACTTGCACTGTGGAC  1702

Query  593  AAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCACAGTAGTGATTGGAAAT  666
            ||||||||||||||||.|||||.||.||||..|||||||||.|||||||||||||.|||||.|||||.||||||
Sbjct 1703  AAGGCTTCCGAGAGGCCGAGAAGATCAAGAGGCTTTTGCTGCATTTCAACTGCAGAACAGTGGTGATCGGAAAT  1776

Query  667  GGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTATTTTGCACCACTGGATGT  740
            ||||||||||||.|||||||.|||||.|||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct 1777  GGAACTGCCTGCCGGGAAACTGAAGCCTACTTTGCTGACCTGATAATGAAAAATTACTTTGCACCACTGGATGT  1850

Query  741  TGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAG  814
            .||||||||.|||||||||||||||||.||.||.|||||||||||||||||.|||||.|||||.||||||||||
Sbjct 1851  CGTTTACTGCATCGTCAGTGAAGCAGGGGCCTCCATCTACAGTGTCAGCCCCGAAGCGAACAAGGAGATGCCAG  1924

Query  815  GGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAA  888
            |.|||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1925  GACTGGACCCTAACTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTTCAAGATCCATTAGCTGAGCTAGTGAAA  1998

Query  889  ATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGA  962
            .||||.||.||||||||||||||||||||||||||       ||.|.||||    |.||               
Sbjct 1999  TTTGACCCGAAGCACATTGGAGTTGGAATGTATCA-------GTGTTCCAG----TTCT---------------  2046

Query  963  CAGTGT-TGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCAT  1035
               ||| || ||||.|                                                          
Sbjct 2047  ---TGTCTG-AGAAAA----------------------------------------------------------  2058

Query 1036  ATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCG  1109
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1110  AGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACC  1183
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1184  AGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACATCT  1257
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1258  TCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTTACTGAA  1331
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1332  GCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTGTCATCCATTG  1405
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1406  GAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTGAAAAGGAAGGAATG  1479
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1480  GAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGA  1553
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1554  AAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGA  1627
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1628  TTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAA  1701
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1702  TCTGGGCTGATTCCCATACGAAATGTAACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACT  1775
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1776  GGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCA  1849
                                                                                      
Sbjct 2059  --------------------------------------------------------------------------  2058

Query 1850  TTCGGGTGTTA  1860
                       
Sbjct 2059  -----------  2058

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