Nucleotide Global Alignment

Description

• Query: TRCN0000470293
• Subject: XM_011244027.2
• Aligned Length: 1327
• Identities: 932
• Gaps: 251

Alignment

Query    1  ---------------------------------ATGGGTAGCAAGAAACTAAAACGAGTGGGTTTATCACAAGA  41
                                             |||.|.|||||||||||||.|||||||||||||||.|.|||
Sbjct    1  ATGCTTGTAAGATTCTTTGGGAGCCCTGGAAACATGAGCAGCAAGAAACTAAGACGAGTGGGTTTATCTCCAGA  74

Query   42  GCTGTGTGACCGTCTGAGTAGACATCAGATCCTTACCTGTCAGGACTTTTTATGTCTTTCCCCACTGGAGCTTA  115
            |||||||||||||.|.||.|||.|.|||||..|||.|||||||.||||||||.||||.||||||||.||.||||
Sbjct   75  GCTGTGTGACCGTTTAAGCAGATACCAGATTGTTAACTGTCAGCACTTTTTAAGTCTCTCCCCACTAGAACTTA  148

Query  116  TGAAGGTGACTGGTCTGAGTTATCGAGGTGTCCATGAACTTCTATGTATGGTCAGCAGGGCCTGTGCCCCAAAG  189
            ||||.||||||||.||||||||..||||||||||.||.|||||...||..||.||||.||||||||||||..||
Sbjct  149  TGAAAGTGACTGGCCTGAGTTACAGAGGTGTCCACGAGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGCAG  222

Query  190  ATGCAAACGGCTTATGGGATAAAAGCACAAAGGTCTGCTGATTTCTCACCAGCATTCTTATCTACTACCCTTTC  263
            ||||||||||||||||.|.||||..|||.|||||||||..||.|||||||.||||||.|.|||||||||||.|.
Sbjct  223  ATGCAAACGGCTTATGAGTTAAAGACACGAAGGTCTGCACATCTCTCACCGGCATTCCTGTCTACTACCCTGTG  296

Query  264  TGCTTTGGACGAAGCCCTGCATGGTGGTGTGGCTTGTGGATCCCTCACAGAGATTACAGGTCCACCAGGTTGTG  337
            .||.|||||.|||||..||||.|||||||||.||||||||||.|||||||||||||||||||||||||||||.|
Sbjct  297  CGCCTTGGATGAAGCATTGCACGGTGGTGTGCCTTGTGGATCTCTCACAGAGATTACAGGTCCACCAGGTTGCG  370

Query  338  GAAAAACTCAGTTTTGTATAATGATGAGCATTTTGGCTACATTACCCACCAACATGGGAGGATTAGAAGGAGCT  411
            ||||||||||||||||.|||||||||||..|.||.|||||||||||.||||.|.||||||||||||||||.|||
Sbjct  371  GAAAAACTCAGTTTTGCATAATGATGAGTGTCTTAGCTACATTACCTACCAGCCTGGGAGGATTAGAAGGGGCT  444

Query  412  GTGGTGTACATTGACACAGAGTCTGCATTTAGTGCTGAAAGACTGGTTGAAATAGCAGAATCCCGTTTTCC-CA  484
            |||||.|||||.|||||||||||||||||||.||||||.|||||||||||.||.||.|||||.|||||||| ||
Sbjct  445  GTGGTCTACATCGACACAGAGTCTGCATTTACTGCTGAGAGACTGGTTGAGATTGCGGAATCTCGTTTTCCACA  518

Query  485  GATATTTTAACACTGAAGAAAAGTTACTTTTGACAAGTAGTAAAGTTCATCTTTATCGGGAACTCACCTGTGAT  558
             |||||||||||||||.|||||.||.|||.||||.||.||||.|||||||||||..||.||.|||||||||||.
Sbjct  519  -ATATTTTAACACTGAGGAAAAATTGCTTCTGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAG  591

Query  559  GAAGTTCTACAAAGGATTGAATCTTTGGAAGAAGAAATTATCTCAAAAGGAATTAAACTTGTGATTCTTGACTC  632
            |...|||||||||||.||||.||||||||.|||||.||.||.||.||||||.||||.|||||||||.|||||||
Sbjct  592  GGGCTTCTACAAAGGCTTGAGTCTTTGGAGGAAGAGATCATTTCGAAAGGAGTTAAGCTTGTGATTGTTGACTC  665

Query  633  TGTTGCTTCTGTGGTCAGAAAGGAGTTTGATGCACAACTTCAAGGCAATCTCAAAGAAAGAAACAAGTTCTT-G  705
            ..||||||||||||||||||||||||||||..|..|.|||||||||||..||||||||||.||||||||||| |
Sbjct  666  CATTGCTTCTGTGGTCAGAAAGGAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAAAGGAACAAGTTCTTGG  739

Query  706  GCAAGAGAGGCATCCTCCTTGAAGTATTTGGCTGAGGAGTTTTCAATCCCA-----------------------  756
            |||| ||..||.||||...|||||||..||||.|.||||||||||||||||                       
Sbjct  740  GCAA-AGGAGCGTCCTTACTGAAGTACCTGGCAGGGGAGTTTTCAATCCCAGGAGAGAGGAAGATGCCTGCCAC  812

Query  757  ----------------------GTTATCTTGACGAATCAGATTACAACCCATCTGAGTGGAGCCCTGGCTTCTC  808
                                  |||||||||||||||||.|||||.||||||||||||||||||||..||||||
Sbjct  813  ATCTGCATCTTCAGGAGGGAAGGTTATCTTGACGAATCAAATTACGACCCATCTGAGTGGAGCCCTCCCTTCTC  886

Query  809  AGGCAGACCTGGTGTCTCCAGCTGATGATTTGTCCCTGTCTG--------------------------------  850
            |.||||||||||||||||||||||||||||||||||||||||                                
Sbjct  887  AAGCAGACCTGGTGTCTCCAGCTGATGATTTGTCCCTGTCTGAAGATGCCAGAAGGAAGGCAGCTGGGCCAGCA  960

Query  851  -------------------------------------AAGGCACTTCTGGATCCAGCTGTGTGATAGCCGCACT  887
                                                 |||||||||||||||||||||||.||.||||.|||||
Sbjct  961  GAGAGGCCTGAACTCAGGCCTCAACAATGGCTGCAGCAAGGCACTTCTGGATCCAGCTGTTTGGTAGCTGCACT  1034

Query  888  AGGAAATACCTGGAGTCACAGTGTGAATACCCGGCTGATCCTCCAGTACCTTGATTCAGAGAGAAGACAGATTC  961
            ||||||.||.|||.|||||.|||||||.|||||||||||.||||||||||||||||||||||||||.|||||||
Sbjct 1035  AGGAAACACATGGGGTCACTGTGTGAACACCCGGCTGATTCTCCAGTACCTTGATTCAGAGAGAAGGCAGATTC  1108

Query  962  TTATTGCCAAGTCCCCTCTGGCTCCCTTCACCTCATTTGTCTACACCATCAAGGAGGAAGGCCTGGTTCTTCAA  1035
            |.|||||||||||.|||||||||.||||||||||.|||||||||||||||||||.|||||||||||||||||||
Sbjct 1109  TCATTGCCAAGTCTCCTCTGGCTGCCTTCACCTCCTTTGTCTACACCATCAAGGGGGAAGGCCTGGTTCTTCAA  1182

Query 1036  GAGACAACA-----TTTTGC-TCT------GTCACCCAA---GCTGAACTGA-----------ACTGGGCTCCA  1083
            ||..||.||     |..||| |||      ||    |||   |||||.||.|           ||||||     
Sbjct 1183  GATTCATCAGGTCTTCATGCATCTGGGCTGGT----CAAGGTGCTGAGCTCATCTTCTGTATTACTGGG-----  1247

Query 1084  GAAATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATGTGCCACCATACCCAGCTAATTTTT  1152
                   ||||                                                          
Sbjct 1248  -------TCCC----------------------------------------------------------  1251