Nucleotide Global Alignment

Description

Query:
TRCN0000470372
Subject:
NR_135139.1
Aligned Length:
4458
Identities:
611
Gaps:
3846

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGCAGGAGTTTCCCCGACAGCTGGAGGCTGCGTGGGATCCGGCGGCGGCTCCCGAGCGCGGCGGTGCGGCCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCGCCCCCTCCCTCCCTCCTCCCCCGCCCGCTTCCGCCCGGCTTATTATCCTCCTTATTGACAAACAGAGCG  148

Query    1  ----------------------------------------ATGGGAGACAAGAAGAGCCCCACCAGGCCGAAGC  34
                                                    ||||||||||||||||||||||||||||||||||
Sbjct  149  GTCGCGGCGGCGACTCTCGGCGTGCGGTGATAGCCAAGCCATGGGAGACAAGAAGAGCCCCACCAGGCCGAAGC  222

Query   35  GGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCC  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCC  296

Query  109  TTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGATCCACATTGTTTGAAGTTATTGTGAGTGC  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGATCCACATTGTTTGAAGTTATTGTGAGTGC  370

Query  183  CTCGAGGACCAAGGAACCGTTGAAATTTCCAATTTCAGGAAG--------------------------------  224
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct  371  CTCGAGGACCAAGGAACCGTTGAAATTTCCAATTTCAGGAAGAGATAACAGGAAGAGAGCCTGGTTACCATTTG  444

Query  225  --------------------------------------------------------------------------  224
                                                                                      
Sbjct  445  GTGGAACAATCCTGCTGGCTCAAGCCTCTGCCTAGAAATTTGGGTCATTCTCTTTTTTGGACAGTCTGCTTCTA  518

Query  225  ----------------------------------------------------------------GAAACCTCGA  234
                                                                            ||||||||||
Sbjct  519  AATTACTTTAATTGAAGAGCTTCCCAAGATTCAAGGTGAATTTAAAGTTAAAAGATTGTCATTTGAAACCTCGA  592

Query  235  CCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCTCCTACACAGTCAAAGAAAGAGAAAAA  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCTCCTACACAGTCAAAGAAAGAGAAAAA  666

Query  309  AGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAATAGCCATAAGAAAACCAGGCCAA  382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAATAGCCATAAGAAAACCAGGCCAA  740

Query  383  GATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAGTTACTGTTGGAGATCTGACAGTCATTATTACA  456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAGTTACTGTTGGAGATCTGACAGTCATTATTACA  814

Query  457  GACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCTGCCTCTGCAGATCAACACAGTCAAAGCGGCTC  530
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct  815  GACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCTGCTTCTGCAGATCAACACAGTCAAAGCGGCTC  888

Query  531  TAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTCACCCAGAGGAGAAGCCTCATCATTGAATGGAG  604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTCACCCAGAGGAGAAGCCTCATCATTGAATGGAG  962

Query  605  AATCTCAT------------------------------------------------------------------  612
            ||||||||                                                                  
Sbjct  963  AATCTCATTAAAGTTTATTTTCTCCAATTTCTTAGTCACTTCTGTCCTACCATGCAAATACACAGATTATGCCA  1036

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1037  AGAGGTACCACATTTTCATGACAGATACATTCATGCACAATCCATAATTTGAGTTTTACATAAAATAGAAATTT  1110

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1111  GTTAGAATTTGTTAGATTTTATTGCAATGATGCCTACCAAACATTTCCAGACTTAACATTTTGGTCTCTGCAGT  1184

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1185  TAAGTGCCATGAAAATGTGGTTGAATTATTCATTATGCAGTGTTATTGGTAAGTGTATTTTCACTTTTAGTTTA  1258

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1259  GTGAATTCTAACACATAATTCTTGAATTCTCTACTATTGGCATGTAACGAATTTAAATTTTTTATAACATAGTG  1332

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1333  CAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAGATAGTTATATGTATACAAGTCAAAGAACAACTT  1406

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1407  AACTATTGCTGCAACAGGTTTTTCTTAATGGTTATCCTCTTAAATACACCTGCTGGTACTTGGTGTGGTTAAAT  1480

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1481  AGGAAAATTGTTATTAAATAAAGAATTTGTATGAACCTTTGCCAATGTTTTTGACACGTTTTACTAATTATTGT  1554

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1555  TCCTGAATTATGTTTCTGGTTTTATCTATTTTTTGAGGTTTTTTTGTTTGCTTATTTTTCAAAACATTCATTTA  1628

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1629  TTGTAATGTTTACTAGCGGACTAGTAAACAATAAAACATTGATTATTTAGCTTTATAATTCAGGTTTAGTGCTA  1702

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1703  TTGTCATTGAACACTGGTATTTTCTGTATCATATAAAACATTAAAATTCAAATAATTATAAGCATTTGGCAAAA  1776

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1777  ACAAGAGAAAAGAAACTTGCCATATTTTACAAGCTGCAATTTTAGAAAAGCTTTAACTTAATGATAGTTTTATC  1850

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1851  ATTGTTTTCTTGTCCCAAACTTATCCAGGGCCATAGAAGTATGAATCTAATTAAAACAGAAATGGGAATTATTG  1924

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1925  CACAGAAATGGGAAATAACTAATTTTAAATCAGTCAAATTGGCTTCTTATTAAATACAATAATTCTTATGAAAA  1998

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 1999  TCATAGTACCCTATTTTCAGACACAGCTGCCAGTTTACACATTTCTCAGTATCCTGAAAGGAAAAAAGTATAGC  2072

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2073  CCCACTTATACTATGTAAAATTACCAATAAAATATTTTTATGACTACAGATTTTGCATTTTTGTTTACAACTAT  2146

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2147  TTAAAGAGTTTTATGTTGTATTTAGAATTTCAACCTAGAAACCACACAGTACTTAAATTCTCCTGGGGTCTCCT  2220

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2221  GCTTTCTCTTAACCATTTGCTTAATATATATCTACCTAAAGGAGACTTCTGAATTGTAAATGAACTTAAAAATA  2294

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2295  GAATGTGGATGCAAAATATCACATAAGACATCATGATAACATTTGAAGAAAAAATAAAACTGTAGACCCTAACA  2368

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2369  GTTGTGATATTTGGTGGTTTCATGTGGTAATGTAATTTTCTGTTTAATTACAGTACTTTTTACAGGCACAGTGG  2442

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2443  TACTGTCTTTTTTGTAAGATGCTAGTTGTGAAATACAATTAATTGCATACAGTAAAAGTCTGTGATTAAAACAT  2516

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2517  TTATATACCTCATTCTTTAGTGTTGTTAAATGAAAAATTAAAATTTGTGTTTATTATAAGATACTTTCAATGGA  2590

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2591  ATACCAGCTAACCAGATATGTTCCTTTAAAACATGAATTTTTTTGTCTTATTCTGTTTTTAACATGTTTCAAAT  2664

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2665  GTTTTATACATTTTTGGAGATAGTAAAAATTTAAAAATGTAATAGGGAAAATATTTAATTTTTAAGTCAAAAAC  2738

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2739  TATGCTTTAAAGGAATTACATCTTATGATCAAATAACTTTCAGGATGTATTTTAAATGAGCTGCAAGAGAGAAA  2812

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2813  AATCTGACAGGAGATGGGATTTTACCTGAATGGAGCATACTCATATTTCTACATAGGTGGGAAGATACTCATCT  2886

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2887  TTCTACATAGACGGGAACACGGTGTAGCATGGAGATTAAGCGTGCTAACTGACACCTCATGTTTGAATCCTGTT  2960

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 2961  GTAGAATGGAAATGAGCTTAAATTACCCAAGCTTACTTTCCATCTATAAAACAGGGCTAATAATGGTAATCACA  3034

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3035  TCTAATTTATAGGGTTTTTGGGAGGATTAAGTCAATCCGTGTAAAATTCTTAATTATCTGACACATACTGGTCA  3108

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3109  CTCAGTAAATGTGAGCTTTTACCATTGTTATAGGTAAAATCCCATTACAAAAATACAAAAATATTTTTTGTAAC  3182

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3183  AGTTATTTTCCTGCCCTCTTGGATGACCTAAAGTAATAGTGTTTTATAGATTTCACTAAATTTTCAGTGTAATA  3256

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3257  TCAGATGTTTTCTCTGGATGCAGAAAGACCATCTTTCCATAATTAAAGAACCTGGTGGGTGTGCACTATGAGAT  3330

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3331  TGGAGAAATGAATTAAGTTGACTTGAAATTATTTTACTTTTATTAATCACAGGTATCTCAACCTGCCTTTGTTT  3404

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3405  CACCCTACTTCAAGTACACTTCCACACCAGGAAAACAGACCCAAATTCCATAAACAGAACTGACGTTAAAATAT  3478

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3479  GCGAAAGATTCAGAACCTAGGTTTAGGGTACATGTTTTTCTCTGTTTCATGAACTTACAGTGTGGTTTGAGCAC  3552

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3553  TGGGTTCTTTTAGCCAAATTCCATACAAAAAGAATTTGGATGTTTTCCAGCATTTATTACCTTACTTTGCTATA  3626

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3627  AGTAAGAGTGAAGATAGGCCGGGTGTGATGGCTCATGCCAGTAATCCCAGCACTTTGGGCTGAAGCAGGCAGAT  3700

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3701  ATTTTGAGCCCAGGACCAGCCTGGGCAACATGGTGAAAGCTCATCTCTATGAAAAAATTTGAATATACATATAT  3774

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3775  ATATATATGTATATTTAAAAAGTGAATATAATTTGAGGCACAGAAGAATATTCTTAAAACCTTTTGTATTATAC  3848

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3849  AATAGAAATAAAGGTTTTATTTTTATTAAATGCTTTCCTAAAATGATAGTGGATAATAGACAAAGTGAAAACAT  3922

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3923  TTAAAAAGGAAGAGAAACTTCAGCCTTTCTAAGTTGATAGCATGTTTATTAACTTTTAGATAAAGATCCTTATA  3996

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 3997  GACTGAAAGAATGTAGCCTCTGCATTAATGGTAAATGGTCTAGAAGTTTTCGTTTCCACTGAGGCTTCCGCCAC  4070

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 4071  TCGCTTTTTTAAACTTCCTGCTATGGTTTGGATATGGTTTGTCCTCACCAAAACTCATGCTGAGGCCTGAGTCC  4144

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 4145  CCAGTTTGATTGTGTTGGTAGGTGGTGCCTTTAAGAGGTGATTAGGTCATTGAGATGGATTAAAGGCTTTCTCA  4218

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 4219  TGAGGCTCAGTTAGTTCTGGAATGGATTCGCTCTTGCAGGAATGGATGAATTCTCACAAGAGTGGGTTGTTATG  4292

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 4293  AAGTGAGGATGCTTCTTGTGTTCTGTTCTCTTTGCCCTCCTCAGTTCACCATCTGCTTTCCACCATGAGTTGAA  4366

Query  613  --------------------------------------------------------------------------  612
                                                                                      
Sbjct 4367  GCAGCATGAGGCCCTCATCAGATGGGCTCCCTGATCTTGGACTCCTCAGCCTTTGGACTCATAAGCCAAAATAA  4440

Query  613  ------------------  612
                              
Sbjct 4441  ATCTGTTTTCTTTATAAA  4458

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.