Nucleotide Global Alignment

Description

Query:
TRCN0000470691
Subject:
XR_002957640.1
Aligned Length:
3065
Identities:
1066
Gaps:
1999

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCGGACCCAGATGACTGCCTCCTCACTTCCTCCCTCCCGATTCCGCCGCGGCCCCCAAAGACTCTCGGGGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCTTGTCCGCACCGCTTGGAGGGAGTGTGCTCTGAGTTAAGCTGGTCTCTTCTGGTCCTGGAAAAAAATGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATTGACAAGGTTGCTGGATCTGCGCAGAAAAGAAAGTGCCACTTAATAAAAAATTTAGCCCGGCAGTGGTACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCTGCAGAGCTTGCTGCCCTTGGACGTTAGCAGGAAGCCTTCGGGGTGCTGTAATCGGCGGGCAGAGGAGAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGGCCGCGGAATTAAAAGGAACAAAAGCTAGAGCGCCATGCCAAACGTCCCCGGCAAGACCCAGTTAGGCAGG  370

Query    1  ---------------------------------------------------------ATGGACGGAGTAGGGGT  17
                                                                     |||||||||||||||||
Sbjct  371  AGCCGGGAGTGATGGGAAAATGAACTAGAATACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGT  444

Query   18  TCCCGCTTCCATGTACGGAGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGC  91
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCCCGCTTCCATGTACGGAGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGC  518

Query   92  CGCTCCACGCCACACAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCT  165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCTCCACGCCACACAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCT  592

Query  166  GTCAACGACGCCTTGAAGCGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTCAACGACGCCTTGAAGCGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTT  666

Query  240  TGAGAAGTGCGAGCTGGCGACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACT  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGAGAAGTGCGAGCTGGCGACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACT  740

Query  314  CCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAG  387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAG  814

Query  388  CTGGACAATTTGATGATACAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACT  461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGGACAATTTGATGATACAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACT  888

Query  462  GTGCGATAACTTCTGCCACCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAA  535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTGCGATAACTTCTGCCACCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAA  962

Query  536  GAGACGGCAGCTCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCT  609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GAGACGGCAGCTCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCT  1036

Query  610  TCTTGGCGAGACCACGATGATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGC  683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCTTGGCGAGACCACGATGATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGC  1110

Query  684  TTCCCAGAGCGGAGACAACAGCAGTGAGCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTG  757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTCCCAGAGCGGAGACAACAGCAGTGAGCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTG  1184

Query  758  ACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATC  831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATC  1258

Query  832  ATGAGAGCATGGCTCTTCCAGCATCTCACACATCCGTACCCTTCCGAAGAGCAGAAGAAACAGTTAGCGCAAGA  905
            ||||||||||||||||||||||||||||||                                            
Sbjct 1259  ATGAGAGCATGGCTCTTCCAGCATCTCACA--------------------------------------------  1288

Query  906  CACAGGACTTACAATTCTCCAAGTAAACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTG  979
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1289  ---------------------------------GTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTG  1329

Query  980  ACCAGTCAAATCGAG---------------------CAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAG  1032
            |||||||||||||||                     ||||||||||||||||||||||||||||||||||||||
Sbjct 1330  ACCAGTCAAATCGAGCAGGTTTTCTTCTTGATCCTTCAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAG  1403

Query 1033  CCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGG  1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  CCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGG  1477

Query 1107  CATGAATATGGGCATGGATGGGCAATGGCACTACATG-------------------------------------  1143
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 1478  CATGAATATGGGCATGGATGGGCAATGGCACTACATGTAACCTTCATCATGTAAAGCAATCGCAAAGCAAGGGG  1551

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1552  GAAGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCTATGGGAATGAGTATGGCACAGCCAAGT  1625

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1626  TACACTCCTCCCCAGATGACCCCACACCCTACTCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAG  1699

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1700  CCATCCCCACCACCCAGCCATGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGA  1773

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1774  GCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAG  1847

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1848  GGAACTCAAGGGAAAAGGAAACACACGCAAAAACTATTTTAAGACTTTCTGAACTTTGACCAGATGTTGACACT  1921

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1922  TAATATGAAATTCCAGACAGCTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGC  1995

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1996  AACAAGAACACAAATGTGAAATCATGGGCTGACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAAAAGAC  2069

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2070  TCCGAGAGTTATAACTACTGTAGTATAAATATAGGAACTAAGTTAAACTTGTACATTTCTGTTGATCACGCCGT  2143

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2144  TATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCA  2217

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2218  AAAGAATGACTGTTTTGGTTCATCAGTGAATTCACCATCCAGGAGAGACTGTGGTATATATTTTAAACCTGTTG  2291

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2292  GGCCAATGAGAAAAGAACCACACTGGAGATCATGATGAACTTTTGGCTGAACCTCATCACTCGAACTCCAGCTT  2365

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2366  CAAGAATGTGTTTTCATGCCCGGCCTTTGTTCCTCCATAAATGTGTCCTTTAGTTTCAAACAGATCTTTATAGT  2439

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2440  TCGTGCTTCATAAGCCAATTCTTATTATTATTTTTGGGGGACTCTTCTTCAAAGAGCTTGCCAATGAAGATTTA  2513

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2514  AAGACAGAGCAGGAGCTTCTTCCAGGAGTTCTGAGCCTTGGTTGTGGACAAAACAATCTTAAGTTGGGCAGCTT  2587

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2588  TCCTCAACACAAAAAAAAGTTATTAATGGTCATTGAACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGG  2661

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2662  GGATAAAAAGGAGCAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTATTAATTGTTTCATGTTAGAT  2735

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2736  ATTCTATGTGTTTACCTCAATTGAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTAT  2809

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2810  TGTATGTCCATGAATTCTTCTTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTG  2883

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2884  TCAAATTTACATTAAAATACTTGTATGAGGACTGTGACGTTATGTTAAAAAAAAAAAGGTGTTAAGTCACAAAA  2957

Query 1144  -------------------------------  1143
                                           
Sbjct 2958  AGCGGTAATAAATATTTCATTTTTGATTTTT  2988

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.