Nucleotide Global Alignment
Description
- Query:
- TRCN0000471114
- Subject:
- XR_921764.3
- Aligned Length:
- 3892
- Identities:
- 1762
- Gaps:
- 2049
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGGTTTAAAGATGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGCGCGGAGCCGCGACAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGGAAAAGCAGAATCTGTGAGTCGCCTGGAGGCAGCGCGGCGGCTGCCGTGAGGAGGCCGGGTGCGGAGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCGGTGGCCCAGCCACTCAGGGCCAGGGCCTGGGCTGGGAGGGAGAGACCGGAGCAGCGCCAGGAGCCCGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGGAGCCGAGGAGGAATGTGACCAGGGGTCGGCGGGGGCGCGGGAGTACGCGAGAGCAGGGATGGGGCAGCAG 296
Query 1 ------------------------------------------------------------------------AT 2
|
Sbjct 297 GTGGGCCGCGTCGGGGAAGCTCCGGGGCTCCAGCAGCCTCAGCCCCGCGGGATCCGGGGCAGCAGTGCAGCCA- 369
Query 3 GGTCCT-----------TGGGAC-------------------AGTTCTCCTTC--------CACCTAATAGTTA 38
||.||| .||||| ||..|..|||| ||||
Sbjct 370 GGCCCTCCGGCCGCAGGCGGGACCCGGCGGGGCGCACCACAGAGACCGGCTTCAATATCTTCACC--------- 434
Query 39 TGGCAGAGATCAGGACACTTCACTTT----GCTGCCTGTGCA--------CTGAGGCCTCAGAATCTGCTCTAC 100
||| ||.|| ||||||| |||| ||||.| .||||| || .||
Sbjct 435 ---CAG----CATGA----TCACTTTGCCAGCTG--TGTGGAGGATGGATTTGAGG-----GA--------GAC 482
Query 101 CCGACTTAA----------CAGAAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGA 164
..||||..| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AAGACTGGAGGCAGTAGTCCAGAAGCTTTGCATCGTCCCTATGGTTGTGATGTTGAACCCCAGGCACTAAATGA 556
Query 165 GGCTATCAGGTGGAGCTCCAAGGAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGCTATCAGGTGGAGCTCCAAGGAGAACTTGCTCGGAGCCACTGAGAGTGACCCTAATCTCTTCGTTGCACTTT 630
Query 239 ATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAGGTGAAAAGCTACGAGTCCTTGGTTACAAC 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ATGATTTTGTAGCAAGTGGTGATAACACACTCAGCATCACTAAAGGTGAAAAGCTACGAGTCCTTGGTTACAAC 704
Query 313 CAGAATGGTGAGTGGAGTGAAGTTCGCTCTAAGAATGGGCAGGGCTGGGTGCCAAGCAACTACATCACCCCAGT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAGAATGGTGAGTGGAGTGAAGTTCGCTCTAAGAATGGGCAGGGCTGGGTGCCAAGCAACTACATCACCCCAGT 778
Query 387 GAACAGCCTGGAAAAACACTCCTGGTACCATGGACCTGTGTCACGCAGTGCAGCTGAGTATCTGCTCAGCAGTC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAACAGCCTGGAAAAACACTCCTGGTACCATGGACCTGTGTCACGCAGTGCAGCTGAGTATCTGCTCAGCAGTC 852
Query 461 TAATCAATGGCAGCTTCCTGGTGCGAGAAAGTGAGAGTAGCCCTGGGCAGCTGTCCATCTCGCTCAGGTACGAG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TAATCAATGGCAGCTTCCTGGTGCGAGAAAGTGAGAGTAGCCCTGGGCAGCTGTCCATCTCGCTCAGGTACGAG 926
Query 535 GGACGTGTGTATCACTACAGGATCAATACCACTGCAGATGGCAAGGTGTATGTGACTGCTGAGAGCCGCTTCAG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGACGTGTGTATCACTACAGGATCAATACCACTGCAGATGGCAAGGTGTATGTGACTGCTGAGAGCCGCTTCAG 1000
Query 609 CACCTTGGCAGAGCTTGTACACCATCACTCCACAGTGGCTGATGGGCTGGTGACAACATTACACTACCCAGCAC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CACCTTGGCAGAGCTTGTACACCATCACTCCACAGTGGCTGATGGGCTGGTGACAACATTACACTACCCAGCAC 1074
Query 683 CCAAGTGTAATAAGCCTACAGTCTATGGTGTGTCCCCCATCCACGACAAATGGGAAATGGAGCGAACAGATATT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CCAAGTGTAATAAGCCTACAGTCTATGGTGTGTCCCCCATCCACGACAAATGGGAAATGGAGCGAACAGATATT 1148
Query 757 ACCATGAAGCACAAACTTGGGGGCGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTAC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ACCATGAAGCACAAACTTGGGGGCGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTAC 1222
Query 831 AGTTGCTGTGAAAACATTGAAGGAAGATACCATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AGTTGCTGTGAAAACATTGAAGGAAGATACCATGGAGGTAGAAGAATTCCTGAAAGAAGCTGCAGTAATGAAGG 1296
Query 905 AAATCAAGCATCCTAATCTGGTACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAA 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AAATCAAGCATCCTAATCTGGTACAACTTTTAGGTGTGTGTACTTTGGAGCCACCATTTTACATTGTGACTGAA 1370
Query 979 TACATGCCATACGGGAATTTGCTGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TACATGCCATACGGGAATTTGCTGGATTACCTCCGAGAATGCAACCGAGAAGAGGTGACTGCAGTTGTGCTGCT 1444
Query 1053 CTACATGGCCACTCAGATTTCTTCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CTACATGGCCACTCAGATTTCTTCTGCAATGGAGTACTTAGAGAAGAAGAATTTCATCCATAGAGATCTTGCAG 1518
Query 1127 CTCGTAACTGCCTAGTGGGAGAAAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 CTCGTAACTGCCTAGTGGGAGAAAACCATGTGGTAAAAGTGGCTGACTTTGGCTTAAGTAGATTGATGACTGGA 1592
Query 1201 GACACTTATACTGCTCATGCTGGAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATAC 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GACACTTATACTGCTCATGCTGGAGCCAAATTTCCTATTAAGTGGACAGCACCAGAGAGTCTTGCCTACAATAC 1666
Query 1275 CTTCTCAATTAAATCTGACGTCTGGGCTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCAT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CTTCTCAATTAAATCTGACGTCTGGGCTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCAT 1740
Query 1349 ATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGC 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGC 1814
Query 1423 CCCCCTAAGGTTTATGAACTTATGAGAGCATGCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 CCCCCTAAGGTTTATGAACTTATGAGAGCATGCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAAC 1888
Query 1497 ACACCAAGCTTTTGAAACCATGTTCCATGACTCCAGCATTTCTGAAGAGGTAGCTGAGGAGCTTGGGAGAGCCG 1570
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1889 ACACCAAGCTTTTGAAACCATGTTCCATGACTCCAGCATTTCTGAAG---------------TT---------- 1937
Query 1571 CCTCCTCGTCATCTGTTGTTCCATACCTGCCCCGGCTACCTATACTTCCTTCCAAGACTCGGACACTGAAGAAA 1644
|||| |||.|..|.|||| ||.|||
Sbjct 1938 -CTCC-------------------------------------TACATTGTGCCAA---TCAGAC---------- 1960
Query 1645 CAGGTGGAGAACAAGGAGAACATTGAAGGGGCACAAGATGCCACAGAAAATTCTGCTTCCAGTTTAGCACCAGG 1718
|||.|.||||..|.|||| ||.|||| ||||||..|...||.|.| |||||.| |.
Sbjct 1961 ---GTGCATAACATTGTGAAC----------CAAAAGA---CACAGAGCAGGATGATGC-----TAGCAAC-GT 2012
Query 1719 GTTCATCAGAGGTGCACAGGCCTCTAGTGGATCCCCAGCACTGCCTCGAAAGCAAAGAGACAAGTCACCCAGCA 1792
.|||| |||| |.|.||| .|||| |||| ||
Sbjct 2013 ATTCA-------------------TAGT--AACTCCA-AACTG----GAAA---------------------CA 2039
Query 1793 GCCTCTTGGAAGATGCCAAAGAGACATGCTTCACCAGGGATAGGAAGGGGGGCT-------TCTTCAGCTCCTT 1859
.||| |.||||.|.|||..||| ||.|..||.||.| |.|||| |.|.||
Sbjct 2040 ACCT-----------------AAACATCCATCAAGAGG---AGAACAGGTGGATTGTGGTATATTCA-CACGTT 2092
Query 1860 --CATGAAGAAGAGAAATGCTCCTACACCCCCCAAACGCAGCAGCTCCTTCCGAGAAATGGAGAATCAGCCCCA 1931
|||| |||||| ||.||| ||||| ||||
Sbjct 2093 GGCATG----------------CTACAC-------------------------AGCAAT-GAGAA----CCCC- 2119
Query 1932 TAAGAAATACGAACTCACGGGTAACTTCTCATCTGTTGCTTCTCTACAGCATGCTGATGGGTTCTCTTTCACTC 2005
||| || |||||.|
Sbjct 2120 ------------------------------------TGC-------CA-CATGCAG------------------ 2131
Query 2006 CTGCCCAGCAAGAGG-CGAATCTGGTGCCACCCAAGTGCTATGGGGGGAGCTTTGCACAGAGGAACCTCTGTAA 2078
|||| |.|| ||||||| ||.||..||.||..|||.|| |.|||
Sbjct 2132 -----CAGC--GTGGACGAATCT------ACACACATGATACTGGGCGA-----------AAGAA--------- 2172
Query 2079 TGACGACGGTGGTGGGGGTGGGGGCAGTGGCACTGCTGGGGGTGGGTGGTCTGGCATCACAGGCTTCTTTACAC 2152
|.||| |||
Sbjct 2173 ----------------------GCCAG-------------------------------ACA------------- 2180
Query 2153 CACGCTTAATCAAAAAG---ACACTGGGCTTACGA----GCAGGTAAACCCACAGCCAGTGATGACACTT---- 2215
|||.|| |.||| |||.|| |.|||| ||| |||.|| .|||
Sbjct 2181 -----------AAAGAGTACATACT----TTATGATTCCGTAGGT--------AGC---TGAGGA-GCTTGGGA 2227
Query 2216 ---CCAAGCCTTTTCCAAGGTCAAACTCTACATCTTCCATGTCCT--CAGGGCTTCCAGAGCAGGATAGGATGG 2284
|| ||||..|| |||| ||| ..|.|||||| .||| |..||||.|| .|||
Sbjct 2228 GAGCC--GCCTCCTC----GTCA---TCT-GTTGTTCCAT-ACCTGCCCCGGCTACC-------TATA------ 2277
Query 2285 CAATGACCCTTCCCAGGAACTGCCAGAGGTCCAA-ACTCCAGCTGGAAAGGACAGTGTCCACCTCTTCTCAGCC 2357
||||| .||||| |||| |||||
Sbjct 2278 --------CTTCC---------------TTCCAAGACTC----------GGACA-------------------- 2298
Query 2358 AGAAGAGAATGTGGACAGGGCCAATGACATGCTTCCAAAAAAATCAGAGGAAAGTGCTGCTCCAAGCAGGGAGA 2431
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2432 GACCAAAAGCCAAGTTATTGCCCAGAGGAGCCACAGCTCTTCCTCTCAGAACACCCTCTGGGGATCTAGCCATT 2505
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2506 ACAGAGAAGGACCCTCCAGGGGTGGGAGTGGCTGGAGTGGCAGCTGCCCCCAAGGGTAAAGAGAAGAATGGTGG 2579
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2580 GGCACGACTTGGGATGGCTGGAGTTCCAGAGGATGGAGAGCAGCCGGGCTGGCCTTCTCCAGCCAAGGCTGCCC 2653
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2654 CCGTCCTCCCAACCACTCACAACCACAAAGTGCCAGTCCTTATCTCACCCACTCTGAAACACACTCCAGCTGAC 2727
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2728 GTGCAGCTCATTGGCACAGACTCTCAGGGGAATAAATTCAAGCTCTTATCTGAGCATCAGGTCACATCCTCTGG 2801
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2802 AGACAAGGACCGACCCCGACGGGTAAAACCAAAGTGTGCCCCACCCCCACCACCAGTGATGAGACTACTGCAGC 2875
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2876 ATCCGTCCATCTGCTCAGACCCTACAGAAGAGCCAACTGCCCTAACTGCAGGACAGTCCACATCAGAAACACAG 2949
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 2950 GAAGGAGGAAAGAAGGCAGCTCTGGGCGCAGTGCCCATCAGTGGGAAAGCTGGGAGGCCAGTGATGCCTCCACC 3023
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3024 TCAAGTGCCTCTGCCCACATCTTCCATCTCGCCAGCCAAAATGGCCAATGGCACAGCAGGTACTAAAGTGGCTC 3097
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3098 TGAGAAAAACCAAACAGGCCGCTGAGAAAATCTCAGCAGACAAAATCAGCAAAGAGGCCCTGCTGGAATGTGCT 3171
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3172 GACCTACTGTCCAGTGCACTCACGGAACCTGTGCCCAACAGCCAGCTGGTAGACACTGGACACCAGCTGCTTGA 3245
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3246 CTACTGCTCAGGCTATGTGGACTGCATCCCTCAAACTCGCAACAAATTTGCCTTCCGAGAGGCTGTGAGCAAAC 3319
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3320 TGGAACTCAGCCTGCAGGAGCTACAGGTTTCTTCAGCAGCTGCTGGTGTGCCCGGGACAAACCCTGTCCTTAAT 3393
Sbjct 2299 -------------------------------------------------------------------------- 2298
Query 3394 AACTTATTGTCATGTGTACAGGAAATCAGTGATGTGGTGCAGAG 3437
Sbjct 2299 -------------------------------------------- 2298
