Nucleotide Global Alignment
Description
- Query:
- TRCN0000471271
- Subject:
- NR_001575.1
- Aligned Length:
- 5721
- Identities:
- 694
- Gaps:
- 5006
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTGCGGCTGTCCCGGGAGGGCTTTAGCGCAGAGCCGCGACGGGCAGCGGGGGTGTGTTGCCTGACGCGTGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGCTGTGGGGCGACACACGGGGGCGGCTTCTGCAGCCGAGGGACCCCGCTTTGCAGCCTGCACCCCGGCTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGTGCCCGCCGCTGTCTGTCGCCCGCCGGTGCGATGAGCCCAGCCCTGCTTGGACGCTGTTCACGCCTCTGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCATACCTTGCTCCTGTCCTCTGTTTGCAGTTCCACTCTAGCAGAGCAGGGTGGGCTCCTCCCCTCTGTACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTAGAGGAGCCTGGTCACTGGCCCATCTCAGTAGTGAAACTGGAGGTTTGATGCACAGGGGATTCTCAGTAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCGCCAGTGCCTGATTTATCGTGAGAAGCAGTTTAATATTTCGGCTATAAAAGGCTAGAACTAGTTCCTAATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGAAGGTGTGCCAGGTTGTAAATTGTCAGGTTGCAAGTAGGGATGAGCACGCCAAGTTTTTGCGTATAGGTCTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGAAGTTTTGGGGGTGGGGGAGGATGCGGTACCCCAGACCTGTTTCCTTGTCTGCCCAGACCTTGCCATGGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGCTTTCCATCTCTTGTGACAGTGTCTCAAGGAGCAGTAGACATTCTTTGGCTGCAGCAGATTTCGCATTGTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCCTGATTGGAAGAGTTCAGTTATGAGGCTTCTGGTTGCCAGTTACTCCTTTCTTTTGAAGAGAAAGAACTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATCATTTGGATAAGGGATGGGCGTTGGAAGGAGTAGTTTTCACTTTTTATGTATTGTATAAGGCAGTTATGCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTGAACTATTTATATATGATGGAATAAACAAAAACAAAGCAAGAGCTGCTGGAGGTTTGGATAGTCCTACTCAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTGAAGTAATCAGAATAGTAGTAGTATTGGCAAGTTCTCAGGGTGGGAGATCTGTGGCTTTAGCCACCTGGAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAAGTCTGCGTAATGGTTTCTCAGTGACAGGAGATTCCCTCGGTTTTAATCCAGTAGTTCCTAGTTATTCCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCTCCAGTTTCCAACCGGGTCATTTAGGCCCTTGCAATCTTGTGGAATTCTTATAAATTCTGTTACCAGGTTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTGTTGTTGTAAGGAAAAATTCCATTTTGTTATCTTTTTTTTTTTTTTTTGGATACAGTCTCTCTCTGTCACC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAGCCTCTGCCGCCTGGGTCCAAGTGATTATCCTGTCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGCCTCTCTAGTAGCTGGGATTACAGGCACCGCCACCATGCCTGGCTAATTTTTCTGTTTTTAGTAGAGACAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGTCTCAGCCTCCCAAAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTGGGATTACAGGTGTGAGCCACAGCGCTGGGCCCTAAAACTGCATTTTGTTACCTGTTAATATGAAGCATCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGTTGTTTCCCAAGACACTTCCTGTTTAGGTCCACAGTGAGTTTTAGGAATTAAGTTTAGGAAAGTGGAACAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATTTTGGCACATTGTCTTTTTTTTTTTTTTTTTGGAGACGGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCGCGATCTTGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCTGAGTAGCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGATTACAAGCACATACCACCATGCCCGGCTAACTTTCGTATTTTTAGTAGAGACGGGGTTTCACCGTCTTGGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGGCTGGCCTTGAACTCTTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACCACCGCGCCCAACTGAACACTGTCTTTATAAAAACACAGTCCTTTCAGATGTCGGGACTTATTAATAATTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATATATTCAAATTTATTTGCAACAAAAAATTACCTTTCATAGAAATGTTACATTAAAAAATATATTTTAACTTA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TACTTGATGTCATTGGAACTTTGTTAAACTTTGTTTATATTTTAGTGAAAGGAGAGGAAAATGTTCGATCAGAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAAATATATTTCTAATATATTGAATATTATCCTATCATTGCCACATATTGTGCACTATCAGAATTACATATCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCTTTGTCTTTTCCTACTGTGGGAGTTCGATCAATTTGTAAAACAACATAAATTTTTTTCTATGGGCCAAACAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGATTAGAATGGCTGAAACATAATACTGCTCTGAGGTAGCTGAAGCTAATGGTATTAAACACAAAGCCATATGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAGATCTGCAATTAAAAAAAAAATCACATATAATGGAGGAACTGACATGCAGTACAATTTTATAAATTATGGGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGTTGTAGCCTGTAGTTTTAACATGATACAAACATCACATAATTATCCTATAAAGGTTAATTTCATTGCTACAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGACCTGACAGTTGCAGGAGTACAATAGCTGTCAATAAGATAAAATTGTGTTTTTGGTGGTTTTGGAGAAAGCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGAGGACTTGTTTTAGGAAAAGGCATTTAATCTATTTACAACATTATGTTTTGGTATTACTGGCATTTCTTTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAAGTAATTCAGCATATTATCACTATAAGCTCAGAATTCCCTTTTCCTAAATAGAAAGTGACCTATTTTACTGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTTTTAAAAATGTAAGATTACATTACATTTAACAACATCAACTGTCCATTGCAAACAGCAGTGAAGGAGACCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGTGCAGGAGATACAAAACTTTTCACGCTTACTTTTGGAAGACACGTGTTATATAGCAAATGCGCCTTTCTGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGAGTCTGTTATATTAAATTTGATTTGTATTCATTTTACTGACAGCAGGAGATTGGTAGCCTAAAATCATGGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AGCTTCAAGAGAGTTTTCAACCTGGCATAAATTTCCTTTTTCTGTGAGGAATCCACAGGTAAGAATTGACTGTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGAACAAAAAGATGATTAAGCACTTCATAAGTGCAGGGTTTTGTGAAAGTGGTTCATAATTATAATGTGGATAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATTCCAGATTCTGTTAATGACCACCTCAACATCATACAGTATAGCCATTTTAATATGATGATGTTACGTCAACC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TGTTGTACAACTACTTTATAATTTTACTGTGGGTGATGTGTGTTGAAGTGATCATTAAACATGCCTGTGTGCAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGTGTGTATATGTTTCTGTCCGTATGTCATCTTTATCATCAGTGTGAAACACGACTTCCTCTATATACACGTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGAATTATTAGTTCCTTAAGTGGATCTGATAAATCCTTGGAAAAAGAAGGAGAATTTTGAGAAGTCCTGTGTGT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGTTCCTCAAGTGGATATGGTAAATTCTTGGAAAAAGAATGAGAATTTTGAGAGATAATGTATATTTGATTCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TTTCTGAAATGGAACATAGTCTTGCCATCTGTCTTTGGCTCTTTTTATGACTGGTTCTGTGACTATAGAACAGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCATATACATTATCTGAGCGCATGAGAAAAGCTCTACAGAGAATGGTGGTAGGCTGGTATGAAAGGCGCGATGT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TGTTGTAGGGCATCGAGCCCCGGGCCGTCACCGTCACCTCGGCCGCTGCCGCTGTCACCATGTCACCATCGGGG 3626
Query 1 -------------------------------------------ATGGCCGAGGACCTCTCTGCGGCCACGTCCT 31
|||||.|||||||||||.||||||||.||
Sbjct 3627 CCGCTGCCGCTGTCACCATCGCCTTGTTCCCCCATCCCCCGCCATGGCTGAGGACCTCTCCGCGGCCACATC-- 3698
Query 32 ACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCACGGCCTGTCAG 105
||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||
Sbjct 3699 ----------------CTACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCGCGCCCTGTCAG 3756
Query 106 CACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATTGTCCCCTATGTCGTGGAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 3757 CACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATTGTCCCCTGTGTCGTGGAAA 3830
Query 180 TGTGACTAGAAGAGAGAGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTA 253
|||||||||| ||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3831 TGTGACTAGA--AGAGAGAGCATGCCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTA 3902
Query 254 GCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAG 327
|||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||||
Sbjct 3903 GCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACTTCATTGCAAATCTTGTAAGAAGTATCAG 3976
Query 328 GATGAATATGGTGTTTCTTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGCAATAGGAG 401
||||||||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 3977 GATGAATATGATGTTTCTTCTATCATTCCAAACTTTCAGATCTCTGAAGATTCAGTAGGGAACAGCAATAGGAG 4050
Query 402 TGAAACATCCACATCTGATAACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTTTAAGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 4051 TGAAACATCCACATCTGATAACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTATAAGT 4124
Query 476 GTCCCCTGTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGATCACTGTAACAGTAATCACCTATTTCAG 549
||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||||||||||.||||||||
Sbjct 4125 GTCCCCTGTGTCAAGAATCAAATTTTACCAGAGAGCGTTTACTGGATCACTCTAACAGTAATCACTTATTTCAG 4198
Query 550 ATAGTTCCTGTGACATGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGT 623
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4199 ATAGTTCCTGTGACATGTCCTATTTGTGTATCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGT 4272
Query 624 TAGTCATCTAAATCAGAGACATCAATTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACCCAAT 697
||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 4273 TAGTCATCTAAATCAGAGACATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACTCAAT 4346
Query 698 ACCAAACTGCTGTTGAAGAATCTTTTCAAGTAAACATC------------------------------------ 735
..||||||||||||||||||||.|||||||||||||||
Sbjct 4347 GTCAAACTGCTGTTGAAGAATCATTTCAAGTAAACATCTGAAGGCTGTAGACATCTCTGCATCTTTGTACCTGC 4420
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4421 AAGTGCCATCTTTAAGGGGGAAACTACATGAAGTCACCGTTTCAGTAACTTGATGTGTATATTAATAAAAGTAA 4494
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4495 TTCAGTCATTTTAGTTTTTGATTGAAAATAAAGGTAGGGCTTCTAAAAACTTCATCCTCTTGGTAAGTTAAAAA 4568
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4569 ATGAAAGTTATGACATTAGCTTTAAAAGCGTAAAAGATGTTTCACTAATGTAATGGTGAAAGAGAATCCCTGTT 4642
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4643 GTACTTTATCTTTTTGTAATATTAAATATTCTTGAATTTTTCATTATGTTGCTTTTGAAATTTGGTACATTCCT 4716
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4717 CCCATTTACTTTATTATTGTACACATTAAACACACAGTAGCAAATTTTGAACGATGTGATATAATCTAACAAAT 4790
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4791 CTGAGCCAGTTATTAGAGTTGCAGAATAGAAACTTGAAGTGCTAAATGGAAAAATCCAAAGGAAATTTTTTAAA 4864
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4865 TGCAGATTCTAGCTGAAAAATTCAACTATAAGAAAATCGTATTTATATAACATTTACTATTTTTGAAGACTAGT 4938
Query 736 -------------------------------------------------------------------------- 735
Sbjct 4939 AATAATTTTAATTCTTTAAAAAGTGAAAGCTTGTTGTAAAGATATTTTCTTTTTGTTATTAGAAGGAAATACAG 5012
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5013 AGAGAAAAATTTATTTCTTTCATGGGCATTTGGTAATTTCAGTCTTTGACTGATTTGTAAGCCTAGAATATACT 5086
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5087 AAGCTGAATAGCAGCTCTTTGGCCTCAGAATTTTCAGTAGCCAGTATTTCTGATTAACTAAGTTGAAACTCTTA 5160
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5161 TTAGAAACTTTCAGTTGGTATTACTGTATTCTAGAAGATATAAATGAGAGGTTTGGCTTCATCTCAGTTTAGAA 5234
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5235 ATTTATTCAAAGCTAAAGATGTATATGTATATATATATACTTTTGTGTGTATATATACACGTATGTGTGTATGC 5308
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5309 AGTTTTTCAGGTTATATATAGAGTTTCTATAAGGATTTTTTAAATGGACAAGCAATAGGGGGTTGAAGTGTTTA 5382
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5383 TCTGATTTGTTAAAATTTTGTGTATAACCAGATTTTTAAAAAGTGATAGTCACAGTGCTAAGTGATCTAGTTGG 5456
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5457 CTGCTATTACACCTTAGAAATTGAGTTTACACACACACACAATTACCTGTTTGTATGGTGCTCATTTCTTATTC 5530
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5531 TCAGATATAATGTGTGACCGTGATACAGTGAGAAAGATTCTACCAACCACTGTTTCACTACTTTTTAGTCAAAA 5604
Query 736 -------------------------------------------------------------------------- 735
Sbjct 5605 TTGGGTATGTTCTTAGTATTCATTAGTGAGAATCATAAAGTATTTTGTAGAAGGCCCAAATCACAGAATAAAGG 5678
Query 736 ----------------------- 735
Sbjct 5679 ACTAAGAGTGGATTCACTGACAT 5701
