Nucleotide Global Alignment

Description

Query:
TRCN0000471341
Subject:
XM_017003561.1
Aligned Length:
2955
Identities:
1171
Gaps:
1755

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGGAAGCCTGCAGCACGCTGGCCCAGATCCAGAGGCTGGTGGCCGAGCCTCCCAAGCCCGACGTGGCCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGTGGACTGCGAGTCAGAAACAACCTCTGTTGAGATTGCATCGAATCCAGAAGACACCTGGGACTCTAAGACAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCTGCAGAAATATGGCTTGAAGGCCCAGAAGCTATCCTTGTATGATGTGCTTGCCGACTGCTCTTTCCGCCAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTGATGGGGTTGTGGATATAAAAGCCAAACCGGAGAATGAGTCCGTGCAGACCAGTGCGGAGACGAACAAGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACAGTCCATGCAAAATATTGCAGCAGGTTTGTCCATGCTCCCTGGAAGGATGGGAGCTTGGTCCACGTCAACA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTACCAAAGAGAAGTGCAAGTGGTACAGTGAGAGAATCCACACAGCCCTGGCCCGGATCCGAAGGAGGATTAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGCTACAGGATGGGAGTCAAAGCCTCTTTGGAAGATTGCATAATGATTGCATCTACATTCTCATTGACACGTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCACTCAATGAAGAGCAAACTGGACTTGGTGAAGGACAAGATCATTCAGTTCATACAGGAACAGCTGAAATATA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAAGTAAGTTTAACTTTGTGAAGTTTGATGGTCAAGCAGTTGCTTGGCGGGAACAACTTGCTGAAGTCAATGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GATAATTTGGAACAGGCTCAGTCCTGGATTAGAGACATAAAGATTGGAAGCTCCACAAACACCCTGAGTGCCCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAAAACTGCTTTTGCTGATAAAGAAACACAGGCAATCTACCTTCTGACCGATGGGAGACCTGATCAGCCACCTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAACAGTTATAGACCAGGTCAAACGTTTTCAGGAAATTCCTATTTATACCATCTCCTTCAATTACAATGATGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATTGCAAACAGGTTTTTGAAAGAGGTTGCTGCTTTGACTGGAGGAGAGTTCCATTTTTATAATTTTGGTTGCAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGATCCCACTCCCCCAGAGGCTGTTCAGAATGAAGATCTGACTCTTTTAGTTAAGGAAATGGAACAGGGTCACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTGATCTGGAGAAGATGCAAGACCTTTATTCTGAGTCCTTGATCATGGACTGGTGGTACAATGCAGAAAAGGAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGAGACAGCAAGCATCAAAAGGAAATCTGTTCTATGATTTCAACCCCAGAAAAGTGTGCAAAGCCTCAATCTGA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTCGATTCAACACAAACTTCATCTCTGAATATGTTGAAGGGACCATGGGGCCTTTCAGATCAAAAGGTTCAGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AAAAGAAAGTCCTTCACGCAGAATCAACCAAAACCAGCCTGCTCAGAAGCCAGATGTCCTCCCTCAGGAGCTCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCTTGCAGTGAAAGGAAGGATGGCCTCTCCAATGCCAGCAGCCGGAGGACTGCTCTAAGTGACAAAGAAATGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATCTTGCTGGCTGAGGAGTGGCTGGATGACAAATCGTCAGAAAAGGTGACGCGAGAAGGAAGCCAGGTTTATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACCACGATTCTTCAGATGTGTCTTCAGAAAACTGGCTGAAGACCTATGGCTTGGTCGCCAAGAAACTCACCCTC  1554

Query    1  -------------------------------------------AT------GGCCACGAAAGGCATG-------  18
                                                       ||      |.||..||.|.|||||       
Sbjct 1555  ATGGATGCCTTGTCAGTGGCAGCAGTCCCGCACAGCTCCACCTATGTTCCCGTCCTGGACAAGCATGTCGTGTC  1628

Query   19  --AGG---TTGAAATCCACAAAAGAGGTGTTCCCTCTGGCACATGTGTGCAACGACACAAATAAGATGACATTA  87
              |||   |||          |.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TAAGGTCTTTG----------ATGAGGTGTTCCCTCTGGCACATGTGTGCAACGACACAAATAAGATGACATTA  1692

Query   88  ATTAACCCCCAAGGAGCCAAACTCAATATCTACAAGCGAAAAGTGGAACAGGCAATTCAATCCTATGAAAAGCG  161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693  ATTAACCCCCAAGGAGCCAAACTCAATATCTACAAGCGAAAAGTGGAACAGGCAATTCAATCCTATGAAAAGCG  1766

Query  162  CTTGAATAAAATTGTTTGGCGAGCATTATCTCAAGAGGAAAAAGAAAAGTTAGATGCAAACAAACCAATACAGT  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767  CTTGAATAAAATTGTTTGGCGAGCATTATCTCAAGAGGAAAAAGAAAAGTTAGATGCAAACAAACCAATACAGT  1840

Query  236  ACTTGGAAAACAAAACAGTTTTAAACCAGGCTTTAGAACGGTTGAATTGGCCCATTTCACTGAAAGAGCTGTCG  309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841  ACTTGGAAAACAAAACAGTTTTAAACCAGGCTTTAGAACGGTTGAATTGGCCCATTTCACTGAAAGAGCTGTCG  1914

Query  310  ATGCTGGAAAGTGAAATCCTAGCTGGGAAAATGTACATCCAGCAGGCCATGGAACTCCAGGAGGCTGCCAAGAA  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915  ATGCTGGAAAGTGAAATCCTAGCTGGGAAAATGTACATCCAGCAGGCCATGGAACTCCAGGAGGCTGCCAAGAA  1988

Query  384  GAATTATGCAAACAAGGCCCCGGGAGAGCAACAGAAATTGCAAGGAAATCCAACAAAGAAAACCAAATCAAAAA  457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989  GAATTATGCAAACAAGGCCCCGGGAGAGCAACAGAAATTGCAAGGAAATCCAACAAAGAAAACCAAATCAAAAA  2062

Query  458  GACCAGATCCCCTCAAAGGACAGAAGGTTATTGCAAGATGCGATGAAAATGGCTTTTATTTTCCAGGGGTTGTG  531
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 2063  GACCAGATCCCCTCAAAGGACAGAAGGTTATTGCAAGATGTGATGAAAATGGCTTTTATTTTCCAGGGGTTGTG  2136

Query  532  AAGAAGTGTGTGAGCCGCACCCAAGCACTGGTGGGCTTCAGTTACGGAGACACCAAGGTCGTGTCCACCTCCTT  605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137  AAGAAGTGTGTGAGCCGCACCCAAGCACTGGTGGGCTTCAGTTACGGAGACACCAAGGTCGTGTCCACCTCCTT  2210

Query  606  CATCACGCCTGTGGGGGGCGCCATGCCCTGCCCGCTGCTCCAGGTTGGAGATTATGTGTTTGCCAAAATTGTGA  679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211  CATCACGCCTGTGGGGGGCGCCATGCCCTGCCCGCTGCTCCAGGTTGGAGATTATGTGTTTGCCAAAATTGTGA  2284

Query  680  TACCCAAAGGATTTGACTTCTATGTCCCTGCCATTGTCATAGCACTTCCCAATAAGCATGTGGCCACAGAAAAA  753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285  TACCCAAAGGATTTGACTTCTATGTCCCTGCCATTGTCATAGCACTTCCCAATAAGCATGTGGCCACAGAAAAA  2358

Query  754  TTCTACACAGTTTTGAAGTGTAACAACCGGAGAGAATTTTGCCCTCGGAGTGCACTTATTAAGATCAGCCAAAA  827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2359  TTCTACACAGTTTTGAAGTGTAACAACCGGAGAGAATTTTGCCCTCGGAGTGCACTTATTAAGATCAGCCAAAA  2432

Query  828  CAAGTATGCGCTCTCTTGCTCTCATATAAAGTCACCCCCAATTCCTGAGGGTCCAGAAGTAGAGGATGTGGAGG  901
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 2433  CAAGTATGCGCTCTCTTGCTCTCATATAAAGTCACCCCCAATTCCTGAGGATCCAGAAGTAGAGGATGTGGAGG  2506

Query  902  CGAGGAACTCTGCTTTCCTCTTCTGGCCACTGAAAGAAGCGGACACGCAGGATTCCAGAGAGCCAAGACGAGAG  975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507  CGAGGAACTCTGCTTTCCTCTTCTGGCCACTGAAAGAAGCGGACACGCAGGATTCCAGAGAGCCAAGACGAGAG  2580

Query  976  AAGCCCAGGAGGAAAAAGAGGCCCGCCAAGCAGCCACTCCAGCAGGCGGCGCCCTCGGACTCGGACGGCTCCTC  1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581  AAGCCCAGGAGGAAAAAGAGGCCCGCCAAGCAGCCACTCCAGCAGGCGGCGCCCTCGGACTCGGACGGCTCCTC  2654

Query 1050  CCACGGCATCAGCTCCCATGGGTCCTGCCAGGGGACACACCCCGAGCCCAAG--------------------AC  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|                    ||
Sbjct 2655  CCACGGCATCAGCTCCCATGGGTCCTGCCAGGGGACACACCCCGAGCCCAGGGTTTGGGTGATGGGGGGGGAAC  2728

Query 1104  AGCCCACCTCCACTTCCCCGCGGCCGGGCGTCTAGGACTCAGCAGCCACGCC-----ATC----------ATTG  1162
            |  |.||.||                 ||.|.|    |||||.|   ||.||     |||          ||.|
Sbjct 2729  A--CAACATC-----------------GCTTAT----CTCAGGA---ACACCCTGAAATCCCTTTCAAGAATAG  2776

Query 1163  CCACACCTCCACCTCGAGCAGCCCT----------GCCCTG--TACTCTCCA----AGC---CACCC--ACAGC  1215
             .|||||| .||.||     |.|||          |.||||  ||..|||||    |||   .||||  |||.|
Sbjct 2777  -TACACCT-AACATC-----GTCCTTCAGATTCTGGGCCTGTTTAGGCTCCAGTGCAGCAAAGACCCTAACATC  2843

Query 1216  ----AGCAAAGGGCTGAGGA----GCGTCCCTGAGA-----------CACTT-----------------  1248
                ||.||  .|||||  |    ||.|||| .|||           |||||                 
Sbjct 2844  CTTAAGTAA--TGCTGA--ACTCTGCTTCCC-CAGACAGCCCACCTCCACTTCCCCGCGGCCGGGCGTC  2907

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