Construct: ORF TRCN0000471341

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000183.1_s317c1
Derived from:
ccsbBroadEn_13382
DNA Barcode:
ACAATTGTTCTTGGAACGGTTGCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VWA3B (200403)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471341
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200403 VWA3B von Willebrand factor A dom... XM_006712359.3 46% 44.2% (many diffs)
2 human 200403 VWA3B von Willebrand factor A dom... NM_001345864.2 42.9% 42.4% (many diffs)
3 human 200403 VWA3B von Willebrand factor A dom... XM_017003561.1 39.6% 37.9% (many diffs)
4 human 200403 VWA3B von Willebrand factor A dom... XM_017003562.1 39.6% 37.9% (many diffs)
5 human 200403 VWA3B von Willebrand factor A dom... XM_024452744.1 39.6% 37.9% (many diffs)
6 human 200403 VWA3B von Willebrand factor A dom... XM_006712357.2 33.1% 31.7% (many diffs)
7 human 200403 VWA3B von Willebrand factor A dom... NM_144992.5 31.5% 31.2% (many diffs)
8 human 200403 VWA3B von Willebrand factor A dom... XM_011510771.2 30.3% 29% (many diffs)
9 human 200403 VWA3B von Willebrand factor A dom... XM_011510770.1 30.2% 29.9% (many diffs)
10 human 200403 VWA3B von Willebrand factor A dom... XM_005263897.2 29.3% 28.1% (many diffs)
11 human 200403 VWA3B von Willebrand factor A dom... XR_922884.1 28.6% (many diffs)
12 human 200403 VWA3B von Willebrand factor A dom... XR_922885.3 28.5% (many diffs)
13 human 200403 VWA3B von Willebrand factor A dom... XM_011510772.1 28% 27.6% (many diffs)
14 human 200403 VWA3B von Willebrand factor A dom... NR_144296.2 23.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1314
ORF length:
1248
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc cacgaaaggc atgaggttga aatccacaaa agaggtgttc cctctggcac
121atgtgtgcaa cgacacaaat aagatgacat taattaaccc ccaaggagcc aaactcaata
181tctacaagcg aaaagtggaa caggcaattc aatcctatga aaagcgcttg aataaaattg
241tttggcgagc attatctcaa gaggaaaaag aaaagttaga tgcaaacaaa ccaatacagt
301acttggaaaa caaaacagtt ttaaaccagg ctttagaacg gttgaattgg cccatttcac
361tgaaagagct gtcgatgctg gaaagtgaaa tcctagctgg gaaaatgtac atccagcagg
421ccatggaact ccaggaggct gccaagaaga attatgcaaa caaggccccg ggagagcaac
481agaaattgca aggaaatcca acaaagaaaa ccaaatcaaa aagaccagat cccctcaaag
541gacagaaggt tattgcaaga tgcgatgaaa atggctttta ttttccaggg gttgtgaaga
601agtgtgtgag ccgcacccaa gcactggtgg gcttcagtta cggagacacc aaggtcgtgt
661ccacctcctt catcacgcct gtggggggcg ccatgccctg cccgctgctc caggttggag
721attatgtgtt tgccaaaatt gtgataccca aaggatttga cttctatgtc cctgccattg
781tcatagcact tcccaataag catgtggcca cagaaaaatt ctacacagtt ttgaagtgta
841acaaccggag agaattttgc cctcggagtg cacttattaa gatcagccaa aacaagtatg
901cgctctcttg ctctcatata aagtcacccc caattccTGA GGGTCCAGAA GTAGAGGATG
961TGGAGGCGAG GAACTCTGCT TTCCTCTTCT GGCCACTGAA AGAAGCGGAC ACGCAGGATT
1021CCAGAGAGCC AAGACGAGAG AAGCCCAGGA GGAAAAAGAG GCCCGCCAAG CAGCCACTCC
1081AGCAGGCGGC GCCCTCGGAC TCGGACGGCT CCTCCCACGG CATCAGCTCC CATGGGTCCT
1141GCCAGGGGAC ACACCCCGAG CCCAAGACAG CCCACCTCCA CTTCCCCGCG GCCGGGCGTC
1201TAGGACTCAG CAGCCACGCC ATCATTGCCA CACCTCCACC TCGAGCAGCC CTGCCCTGTA
1261CTCTCCAAGC CACCCACAGC AGCAAAGGGC TGAGGAGCGT CCCTGAGACA CTTTACCCAA
1321CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1381ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1441TATCTTGTGG AAAGGACGAA CAATTGTTCT TGGAACGGTT GCTACGCGTT AAGTCgacaa
1501tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)