Nucleotide Global Alignment
Description
- Query:
- TRCN0000471365
- Subject:
- XR_001779954.1
- Aligned Length:
- 5290
- Identities:
- 1187
- Gaps:
- 3969
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACAGCGCATGCTGGGAATTGCAGTTCCTTTCCTCAAGGCAGGAGGCGGCTGTGAGGTCATCGGTGGTCGCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCACGCCTGCACGTGGCGAGAAAGGGGCGGTGCGCGCTTGCTGTCCCCAGCCGAGCGGAACTGTCTGCGTCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCCTCCGGCCGCGGTCCTCCCGACATGCCGGAGGAGGCGAGCCTCCCGCCCGCTAAGAGATTCCGGCCGGGCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTGCCCTCCCGGGAGACGAGTAGTGATGCTGTTGACGGCTGGCGGCGGCGGCGGAGCTGGAGGAGGCCGGAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGACGCCGCCGCTGGCCCAGCCTTCGGCCAGTCCCTACCGCGAGGCCCTGGAGCTGCAGCGCCGGAGTCTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATCTTCCGGGCGCGGGGGCAGCTATTGGCTCAGCTCCGAAACCTGGACAACGCGGTCCTCATCGGGGAAACTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTCTGGGAAAACAACTCAGATCCCACAGTACCTCTATGAAGGGGGAATTAGCCGCCAGGGCATCATCGCTGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACCCAGCCCCGTCGAGTGGCTGCCATCTCTCTTGCCACCAGAGTCTCAGATGAGAAGAGGACAGAACTCGGGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGGTTGGCTATACAGTGCGCTTTGAGGATGTCACCTCAGAAGACACCAGGATCAAGTTCCTGACAGATGGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTTCTGCGTGAAGCAATTTCAGACTCCTTGCTTCGGAAGTACAGCTGTGTCATTTTGGACGAGGCCCATGAG 740
Query 1 ------------------------------------------------------------------------AT 2
.|
Sbjct 741 CGGACTATTCACACAGATGTGCTCTTTGGAGTGGTGAAGACTGCACAGAAGAGGCGAAAGGAGCTAGGGAAACT 814
Query 3 GC------AGGTGATTGTGATGTCAGCTACGATGGATGTGGACCTGTTCTCTCAGTATTTCAATGGCGCCCCCG 70
|| |.||||||||||||||||||||.||||||||.||||||||.||||||||.||||||.|.|||||.|
Sbjct 815 GCCTCTCAAAGTGATTGTGATGTCAGCTACCATGGATGTCGACCTGTTTTCTCAGTACTTCAATAGAGCCCCTG 888
Query 71 TCCTCTACCTAGAGGGTCGGCAGCATCCGATCCAGGTGTTTTACACCAAACAGCCTCAGAATGATTACCTGCAC 144
||||.|||||.|||||||||||||||||.||||||.|.||.||.|||||||||||||||.|.|||||||||||.
Sbjct 889 TCCTTTACCTTGAGGGTCGGCAGCATCCAATCCAGATCTTCTATACCAAACAGCCTCAGCAGGATTACCTGCAT 962
Query 145 GCCGCGCTTGTCTCCGTCTTCCAGATCCACCAGGAAGCCCCTTCTTCACAGGACATCCTGGTGTTCCTCACTGG 218
||.||.||||||||.|||||||||||||||||||||||.|||.||||.||.|||||||||||||||||||||||
Sbjct 963 GCAGCCCTTGTCTCAGTCTTCCAGATCCACCAGGAAGCTCCTGCTTCTCAAGACATCCTGGTGTTCCTCACTGG 1036
Query 219 GCAGGAGGAGATCGAAGCCATGAGCAAGACGTGCCGAGACATTGCAAAGCACCTCCCAGACGGCTGCCCTGCGA 292
.|||||||||||||||||.|||||||||||.|||.|||||||.||||.||||||||||||.|||||||||.|.|
Sbjct 1037 TCAGGAGGAGATCGAAGCAATGAGCAAGACCTGCAGAGACATCGCAAGGCACCTCCCAGATGGCTGCCCTTCAA 1110
Query 293 TGCTGGTCCTTCCTCTGTACGCCTCCCTGCCCTATGCACAGCAGCTCCGAGTCTTCCAAGGGGCCCCAAAGGGC 366
||||.||||||||||||||||||||||||||||||.|.||||||||.||||||||.||||||||||||||||||
Sbjct 1111 TGCTCGTCCTTCCTCTGTACGCCTCCCTGCCCTATTCGCAGCAGCTTCGAGTCTTTCAAGGGGCCCCAAAGGGC 1184
Query 367 TATCGCAAAGTGATCATTTCAACCAACATCGCTGAAACCTCCATAACCATTACAGGAATAAAATATGTAGTTGA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TATCGCAAAGTGATCATTTCAACCAACATCGCTGAAACCTCCATAACCATTACAGGAATAAAATATGTAGTTGA 1258
Query 441 CACGGGCATGGTTAAAGCAAAGAAGTATAACCCTGACAGTGGTCTTGAGGTGTTAGCAGTGCAGCGGGTATCGA 514
|||||||||||||||||||||||||||||||||||||||||||||||||||..||||.||.|||.|.|||||.|
Sbjct 1259 CACGGGCATGGTTAAAGCAAAGAAGTATAACCCTGACAGTGGTCTTGAGGTACTAGCTGTACAGAGAGTATCAA 1332
Query 515 AGACGCAGGCTTGGCAGCGCACAGGGAGGGCTGGCAGAGAGGACAGTGGCATCTGCTACCGGCTCTACACGGAG 588
||||.|||||.||||||||||||||.||||||||..|||||||||||||||||||||||||.||||||||.|||
Sbjct 1333 AGACCCAGGCCTGGCAGCGCACAGGCAGGGCTGGGCGAGAGGACAGTGGCATCTGCTACCGACTCTACACTGAG 1406
Query 589 GACGAGTTTGAGAAGTTTGATAAGATGACCGTGCCAGAGATCCAGAGGTGTAACCTGGCCAGTGTGATGCTTCA 662
|||||||||||||||||.||.||||||||.|||||||||||||||||||||||||||||||||||.||.|||||
Sbjct 1407 GACGAGTTTGAGAAGTTCGAGAAGATGACGGTGCCAGAGATCCAGAGGTGTAACCTGGCCAGTGTAATACTTCA 1480
Query 663 GCTTCTAGCAATGAAAGTCCCAAATGTGCTCACCTTTGACTTCATGTCGAAGCCATCTCCAGATCACATTCAGG 736
|||.||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||||
Sbjct 1481 GCTCCTAGCAATGAAAGTCCCAAATGTGCTCACCTTTGACTTCATGTCCAAACCTTCTCCAG------------ 1542
Query 737 CGGCCATTGCCCAACTGGACCTGTTAGGTGCTCTTGAACATAAGGATGACCAGCTTACCCTGACTCCAATGGGA 810
Sbjct 1543 -------------------------------------------------------------------------- 1542
Query 811 AGAAAGATGGCAGCATTTCCTTTAGAACCCAAATTTGCCAAAACCATCCTCATGTCCCCCAAATTCCACTGTAC 884
||.||||||.|||||.||||||||||||||||
Sbjct 1543 ------------------------------------------ACTATCCTCCTGTCCTCCAAATTCCACTGTAC 1574
Query 885 AGAGGAGATCCTGACCATTGTCTCCCTGCTGTCTGTGGACAGCGTCCTCCACAACCCTCCTTCCCGGCGAGAGG 958
.||.|||||.||||||||.|||||||||||.|||||||||||.|||||..|||||||||||.|||||.||||.|
Sbjct 1575 CGAAGAGATTCTGACCATAGTCTCCCTGCTATCTGTGGACAGTGTCCTTTACAACCCTCCTGCCCGGAGAGATG 1648
Query 959 AAGTGCAAGGGGTCCGCAAGAAGTTCATATCCAGCGAGGGGGATCACATGACCCTGCTCAATATCTATCGGACC 1032
|.|||||..|.|||||.|||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||
Sbjct 1649 AGGTGCAGAGTGTCCGGAAGAAATTCATATCCAGTGAGGGGGATCACATCACCCTGCTCAATATCTATCGGACC 1722
Query 1033 TTCAAAAACCTAGGCGGAAATAAGGATTGGTGCAAAGAGAATTTTGTCAACAGCAAGAATATGACGCTGGTAGC 1106
|||||||||.|.||.||.||||||||.||||||||||||||||||||||||||||||||||||..|||.|||||
Sbjct 1723 TTCAAAAACATCGGTGGGAATAAGGACTGGTGCAAAGAGAATTTTGTCAACAGCAAGAATATGCTGCTAGTAGC 1796
Query 1107 AGAAGTCAGAGCACAGCTGAGGGACATCTGCTTAAAGATGTCAATGCCAATCGCATCATCCCGAGGAGACGTGG 1180
.||||||||||||||||||||.||.|||||||||||||||||||||||||||...|||||.|||||.|||.|||
Sbjct 1797 TGAAGTCAGAGCACAGCTGAGAGAAATCTGCTTAAAGATGTCAATGCCAATCATGTCATCTCGAGGGGACATGG 1870
Query 1181 AGAGTGTCCGCCGCTGCCTGGCTCACAGCCTCTTCATGAGCACCGCCGAGCTTCAGCCAGATGGCACCTATGCC 1254
|||||||||||||.|||.||||||||||||||||.||||..||.||.||.||.|||.|||||||||||||||||
Sbjct 1871 AGAGTGTCCGCCGTTGCATGGCTCACAGCCTCTTTATGAATACTGCTGAACTCCAGACAGATGGCACCTATGCC 1944
Query 1255 ACCACGGACACCCACCAGCCAGTGGCCATCCACCCGTCGTCTGTCCTCTTCCACTGCAAGCCGGCCTGCGTCGT 1328
|||||||||||.||.||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||.||
Sbjct 1945 ACCACGGACACACATCAGCCAGTGGCCATCCACCCATCATCTGTCCTCTTCCACTGCAAGCCTGCCTGCGTGGT 2018
Query 1329 GTACACTGAGCTGCTCTACACCAACAAGTGCTACATGCGGGACCTCTGCGTCATAGATGCACAGTGGCTGTACG 1402
.||||||...|||||||||||||||||.|||||||||||.||||||||.||..|.|||||..|||||||.||||
Sbjct 2019 CTACACTTCACTGCTCTACACCAACAAATGCTACATGCGTGACCTCTGTGTGGTGGATGCCGAGTGGCTCTACG 2092
Query 1403 AGGCTGCCCCTGAGTACTTTAGGAGGAAGCTGAGAACCGCCAGAAAC--------------------------- 1449
|||||||||||||.|||||.|||||||||||||||||.|||||||||
Sbjct 2093 AGGCTGCCCCTGACTACTTCAGGAGGAAGCTGAGAACGGCCAGAAACTGAACCGTTCCAGGATGCTGCCAGCAT 2166
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2167 GGCTGGGCCTGGAGCTTAGATCACAGCTGTCTTCCAAACATAAGTTTGCAGCCAGACTTCCAGACTCCAAGAGC 2240
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2241 TTAAAAGAATTGCTGAAGCTTCTCAGACTCACCCGTGCAGAATGATCCTACGTAGAGCATGAGAAGCTGAGCTT 2314
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2315 GTGCCTCGGGTCTCACCAGGCAGTTTTGGAGACTGAATTAACTTCTGAGCCTCAGATTCCTCATATGCCGGAGT 2388
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2389 CGGATAAGACTTACACGTTCAGAGTAATGAAGTTTAGAGAAAATGAACAGAATGTGACAGAGACTTGCCTGGTG 2462
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2463 CAAGATAAGACAATCTGTGACTTGTGAGCCATTGTGCTTTGTGATACTAATTAGGTACAGCACAGCCCCTTGAG 2536
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2537 CTCTCATGACTGGGGGAGGAGCCATAGGAGACTACAGATCCAATTTGTTGAAATGTTTCTCCCCCCTTCTTACT 2610
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2611 CCCTCTCCCGTGGATCCCAGAGCCTCATGCATGCTATGCAAAACACTTTGCCACTGAGCCAATCCCCAGCCCTC 2684
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2685 ACTTCTACTTTAATGTCTACCTGTGTGTATTTTAGATAGAAAATTAAAAAATTGACTCCCACAGACAGTTCCAG 2758
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2759 AGTAAGGTATATTCTGACCTGTTGACCCTTATGGCTCAGGGTGTAGCACATTGTCTTGTCTGTCTCCAAGCAGA 2832
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2833 GGCCAGCAAGTAGTTCCTTGGTTGGTCCCCAGTGCCTCTGTGGCTGCATGTCCCCAACAGTGCTTTCAGGAAAC 2906
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2907 CAGCAGGTTTCCTGGAACTAGGAAGCCAACTTTTCAGTGTGGTGGCCTTCTGAAGCCCCGTGGTAGTTTTCTCT 2980
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 2981 TTAACTGAGCACCTACAAATGTGTGCCTGTGAGGGAAGAGAGTTCAAGTCAGAGCTGCTACATGGGGAAGAGGA 3054
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3055 AGGAGGTACCTGACGGCTCGGAAGCCAGAGGATCAGTTTGTCCTTTCTCCTACACCTAGTCTTAGTTTGGGTTG 3128
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3129 TTTGTTAGTTTGTTCATTTCTTAAGGGGTAAACCACTTGAGACAGGGTTTCTCTGTGTAGCCCTGCCTGTCCTG 3202
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3203 AAACTCGCTCTATAGACCACACTGGCCTCAAACCCAGAGATCAGCCTGCCTTTCCCTCCCAAGTGCTGGGATTG 3276
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3277 AAGGTGTGCACCACCACCTGGCCAGTCTTTGTATTTTTGATGCTATTAATTTTCAGTGGTCTGCCTTTGCGGAA 3350
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3351 ACCTGGGGACAATTAGCTTTGCTGCTTCCTAACCAGTCGCCATCTGAAACCTTCGTCGTCTGCACTTGTTAGAG 3424
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3425 GGAACTAGAGAAGCCTCGGCATCCTTTTCCCAGTTGGAAAAGAGTCATCTTTGCTGATGACTAGGAGCAAACAT 3498
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3499 TCCCCAGTTTGGTACTACTTACCTATAATCACTCCCCGCTGAGAAGGGAGGGCTGCGAGTCCTAGGCCAGCCTG 3572
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3573 GGCTAGGCCTTGTATCTAAGTGAAGGAAGGGGAAGGAACACACTTTCACAGAGAATGTTTGAAGGGGGGGGGAG 3646
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3647 TTTTAGCCCTTTTATTGTGCTTAATCGGTCCAAACACATCTGTACTACTGGGATTTTCTCATTTATACAGTGAA 3720
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3721 TTGTATTTATAAGCAACAAATGGGCCAAACTGCCTTCAAGGCACTTCGAAGACAGTGGGCAGTTTCTTTGAGTC 3794
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3795 CAGCAAGCTCTTTCCAGAGAGCCTAGCCTGGCTGGGCACTTCCATTGCCAGGATCTCATTGGTTCACAGCTGTG 3868
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3869 TCTGTTGAGTCTGGTCTAGGCTTTATCTAACCCTAGCCGTGGGCAAAGCTTTTAGTCAGTGCTTAGGGCTGTCT 3942
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 3943 GAGTACTCGTGACTACTTGGATAGAAATGGTCACGTTATCAACCTTCTGAAAGGCTCTCCGGAATGTGCTTTCT 4016
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4017 TTTTCAGTGTATTTTTTGTATTTATGCAAGGTTTATTTAGCCTTGCTTGGTAAGAGGAACTTTTGTATTTTGAA 4090
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4091 AAGAACATTCATCGTGCTAGTTAAAGAAAACAAGGAGGCAATATATTCCCCAGCAATTAACAGTTTCTGTTCCA 4164
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4165 CTGTAAACTAACAGTAAACTATCGAGGTCTTTTCTGGGTCATGGGAACAGTAGCTTGCAGTGACTGGCTCCAGG 4238
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4239 GTGAGGCCTAGGACCTTACCCTGGAGGGACTGCTGCAGAGGACTGGGACCTCCCAGAAAAGGGAGTGATGGATA 4312
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4313 CAGTTTCTAAGGACCCAATGTTTCTGTATAGAAATATGTTTATCATTCTAACATTGTGGGGGGATTTTAATAGA 4386
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4387 ATATTTAGTTTTTTATTAAGCTTTTTTAAAAATTACTATTCAACACAGCTGCTCAGGGATTACATGAGGTGGGA 4460
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4461 GCCCCATTCTGACTCCACAGATCACTACGAAGAAATTAATGCTTATCTTCAGCCAAAGGGACAGCTCTCTTCAA 4534
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4535 GCTTTCTTAAGAAAGTGAAATGTTTTGTGGTTTTGCTGCAGTACAACCTGAGCTACTTTTCAAGTTGGCAAACT 4608
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4609 CTCCAACCTGAAGACTCCAGCCTGGACAGAATAGCCTCCAACAGACAGATGAACTTCCACAACAGCCCTGCGTG 4682
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4683 CTGCAGGGGTTTATCTTCTTGGTAACCGTGGCCTGCGACACCCGGGGCACCAGTTCCATTACCAGGATCCCTGT 4756
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4757 GAGAACATTTGCATCTCTTATAACAGGATTCCAAAACAGCAAAGTATTTACTGTGGCACAAATCCTTGTGCTCC 4830
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4831 AGCTACCAGGGTCTGTTTGGAACTGTGGCCGCGCATCTAAGATGCCATTCCTTGAGCACATAAACTAGACTATA 4904
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4905 CCGGTGGGGAAACAATTCTCTATAGACTGCTGTAGTGTAGAAAACTGACAAGCGGATTTGGACATGTGCTCTGT 4978
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 4979 TCTCTCTGGTCTCAAACATAAAAGAACAGTTCTAGTATATAATGCTCGAAATTTGCTTTTGACTATCAAATCCA 5052
Query 1450 -------------------------------------------------------------------------- 1449
Sbjct 5053 TAAAAACTGAATCTTGTATAATGATCTGTGTGGCCTCTTTTGTTGGGCCTCCTTTCCCTTATTTAAAGAATGCT 5126
Query 1450 ------------------------------------ 1449
Sbjct 5127 GTTTAGAATATTAAACATTATTCTTACTGCCATTCA 5162
