Nucleotide Global Alignment

Description

Query:
TRCN0000471410
Subject:
XR_002957031.1
Aligned Length:
2423
Identities:
1364
Gaps:
929

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGTGCCGGGCGCCCAGGGGTTGCCGCGCTGGGCGGGAGGGCAGCGCCTGAGAGGGCGGTGGGGTGGCGGGGTT  74

Query    1  -----------------------------------------------------ATGGGCATCTACCAGATGTAC  21
                                                                 |||||||||||||||||||||
Sbjct   75  CCTGCGCGCGGCCCGCCATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGGGAGATGGGCATCTACCAGATGTAC  148

Query   22  TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC  222

Query   96  CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG  296

Query  170  ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC  370

Query  244  TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT  444

Query  318  CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC  518

Query  392  TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA  592

Query  466  ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAGTGTGTGGG  539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  593  ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAATGTGTGGG  666

Query  540  CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTCTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT  613
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  667  CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTGTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT  740

Query  614  TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA  814

Query  688  TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA  761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA  888

Query  762  CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG  835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG  962

Query  836  AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCAT----  905
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct  963  AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTGC  1036

Query  906  ---------------------CTGGTTT-----GTGTGCAGCTTGGTGTATT------------ATG-----GC  936
                                 |||||||     .||.|||||...||.| ||            |||     ||
Sbjct 1037  AAGTCTCCTGATCCTTAGCGCCTGGTTTTCTGCTTGCGCAGCCCCGTCT-TTCTCAAGTAGCAGATGATAGTGC  1109

Query  937  CTAA----------CTCTGAGTGCGGGT------------------GATCT---------AGGT-------GGA  966
            ||.|          |.|||||...|.||                  .||||         ||||       ..|
Sbjct 1110  CTGATGGGCAGGTCCACTGAGCTTGAGTAAGTAGACATCAGAAGCACATCTTTGCTTTTGAGGTATTTATCATA  1183

Query  967  AGTATTTATGCCAACCTGGCCCTGT---CTG------------------------GCCTCATAGAGA-------  1006
            |.||||||.|||..||||.|||| |   |||                        ||.|..||||.|       
Sbjct 1184  AATATTTAAGCCTTCCTGCCCCT-TCCCCTGCAAAAAAGGAAAGAAAGCAAATAAGCATGGTAGAAATAGATGA  1256

Query 1007  ----TTCAAT---------------CTTACC-------------------------------------------  1018
                ||.|||               ||||||                                           
Sbjct 1257  GTTTTTAAATAGGACTTTAAAAATACTTACCTTTGGCACTGGCATCAAGCAGTTTGCTAGCACATTCTGATTGC  1330

Query 1019  ----CTC------------TCTGTATCTACT-----TGATTAA--------------CCAAAAATG--------  1049
                |||            |||||..| |||     |.|.|||              |.|||.|||        
Sbjct 1331  GGTGCTCCATGCTGCATTTTCTGTGGC-ACTCCCACTCACTAACTCACTGAGGTGGGCTAAATATGATCCCTTG  1403

Query 1050  -------------------GTTTG--GT-------CGGAAGC---------------------GAACATTATCA  1074
                               |||||  ||       |..||||                     |||| |.||.|
Sbjct 1404  TACAGATGGGACCCCAGGAGTTTGAAGTGATGAACCCTAAGCCACATATGTAAATCAGTGATTGAAC-TGATGA  1476

Query 1075  GCA-TTTCTGTGCCTAGGAGGA-----CTGGCTTGT----CTTAT-----------------------------  1109
            ||| ||||||..|||     ||     |||| ||||    |||||                             
Sbjct 1477  GCACTTTCTGAACCT-----GATTTTTCTGG-TTGTTTAGCTTATTCCCACCTACCTTTCAAAATGCTCTCAGC  1544

Query 1110  -----TGTAATGTTTC---------TTCCAGA-----------AAAGAA---------AGACACAGGTG-----  1144
                 ||||| |||.|         |||.|||           ||||||         |||.|.|||.|     
Sbjct 1545  GTGAGTGTAA-GTTGCATTCAGCGGTTCAAGATGGTTTCATTTAAAGAATGAAGTTGTAGAAAGAGGAGAAATG  1617

Query 1145  --TGTTTGCA--------GTGG--TGAACA--------GCCATTCCTTGTCCTTGCTGGGGAAGCTGA----CC  1194
              ||..||||        ||||  ||.|||        |..|    ||||.|.|.||      |||.|    ||
Sbjct 1618  GATGGGTGCATACAATTTGTGGATTGCACATGTGTTTTGATA----TTGTACATACT------GCTAATGTGCC  1681

Query 1195  ATCAGTGCT------------------------GCCTTTA--ACA-TTGT--------TTATATCTA-----CA  1228
            ||.||||.|                        ||||..|  ||| ||||        ||||||.||     ||
Sbjct 1682  ATAAGTGTTATCTGGGCAAAATCATACCTACTAGCCTAAAGGACAGTTGTGCTGTGGCTTATATGTATTTGCCA  1755

Query 1229  -----CCT---CTGAGCTTTACCCTACA-GTCAT-CAGG----AATGTTGGGCTTGGAACTTGTTCCATGTTCT  1288
                 |||   ..|||     ||||||| .|||| ||||    ||          ||||..||    ||.||  
Sbjct 1756  TGAAGCCTGCATGGAG-----CCCTACATTTCATGCAGGGATAAA----------GGAAAGTG----ATTTT--  1808

Query 1289  CCCGAGTTG---GTGGGATTAT------TGCTCC------------CTTCATCCCCTCACTGAAATATG----T  1337
                |..||   |||...||||      .|||.|            |||           |..||||.|    |
Sbjct 1809  ----ATATGAAAGTGATCTTATGTATAAAGCTACAAAGAATAGTAGCTT-----------TAGAATAAGAAGCT  1867

Query 1338  GCAA------TGGTCTTTACCAT----TCATTGTCTTCGGAGCCACG----GGTCTGACCTCCGGCCTCCTGAG  1397
            ||||      |..|||.||.|||    ||.||.|||    |.|||.|    ||         |.|||.||||  
Sbjct 1868  GCAAAGATATTTTTCTATATCATATACTCTTTTTCT----ACCCAAGCAGTGG---------CTGCCACCTG--  1926

Query 1398  TTTGTTATTGCCGGAGACC--CTTAACAGTCCGCTGCT---------AGAAACATTCTCCGACCT---------  1451
                 |||.|..||.|.||  .|||||...|.||||||         ||||.|| ||.|.|..||         
Sbjct 1927  -----TATGGTTGGGGGCCATGTTAACCAACTGCTGCTTTCCCCCACAGAACCA-TCACAGCACTAGGAATATC  1994

Query 1452  TCAGGTGTAT--------TCGTATCGCAGGCTGGGAG--AAGAAGCATTATCTTTACAG----GCTTTGGACCC  1511
            .|||.||.||        |.|      |||||.||||  |.|.|| ||||       ||    .|.|||.|..|
Sbjct 1995  ACAGATGCATAATAAATGTTG------AGGCTTGGAGGCATGGAG-ATTA-------AGAAAACCGTTGAAAGC  2054

Query 1512  CCAACAGTGTGTGGACA---------AGGAG-AGCTCTTTAGGGAGTGAGAGTGAGG------------AAGAG  1563
            |.|||      ..||||         ||||| .|||..||            |||||            ||.||
Sbjct 2055  CAAAC------CTGACAACACAACATAGGAGCTGCTAATT------------TGAGGTTCTACCCATTCAAAAG  2110

Query 1564  GAAGAATTT------TATGATGCAGAT-----GAAGAGACT-----CAGATGATCAAG----------------  1605
            .||..|.||      |||| |.|||||     |.|||.|.|     ||||..||..||                
Sbjct 2111  CAAATACTTACAAAGTATG-TTCAGATACCTGGGAGACAGTGAGAACAGACAATGCAGTGTCACCTTGCATCCT  2183

Query 1606  --------------------------------------------------------------------------  1605
                                                                                      
Sbjct 2184  TACATGTGATGTCCTGGCTACAATCCTGCCCGTTGTCCTTGGTTTGTGTGCAGCTTGGTGTATTATGGCCTAAC  2257

Query 1606  -------------------------------------------------------  1605
                                                                   
Sbjct 2258  TCTGAGTGCGGGTGATCTAGGTGGAAGTATTTATGCCAACCTGGCCCTGTCTGGC  2312

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