Nucleotide Global Alignment
Description
- Query:
- TRCN0000471410
- Subject:
- XR_002957034.1
- Aligned Length:
- 2433
- Identities:
- 1350
- Gaps:
- 937
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGTGCCGGGCGCCCAGGGGTTGCCGCGCTGGGCGGGAGGGCAGCGCCTGAGAGGGCGGTGGGGTGGCGGGGTT 74
Query 1 -----------------------------------------------------ATGGGCATCTACCAGATGTAC 21
|||||||||||||||||||||
Sbjct 75 CCTGCGCGCGGCCCGCCATGGAGGTGGAGGAGGCGTTCCAGGCGGTGGGGGAGATGGGCATCTACCAGATGTAC 148
Query 22 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGTGCTTCCTGCTGGCCGTGCTGCTGCAGCTCTACGTGGCCACGGAGGCCATCCTCATTGCACTGGTTGGGGC 222
Query 96 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CACGCCATCCTACCACTGGGACCTGGCAGAGCTCCTGCCAAATCAGAGCCACGGTAACCAGTCAGCTGGTGAAG 296
Query 170 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAGGCCTTTGGGGACTGGCTCCTGACAGCCAACGGCAGTGAGATCCATAAGCACGTGCATTTCAGCAGCAGC 370
Query 244 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCACCTCCATCGCCTCGGAGTGGTTTTTAATTGCCAACAGATCCTACAAAGTCAGTGCAGCAAGCTCTTTTTT 444
Query 318 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTTCAGTGGTGTATTTGTTGGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAGTCTATC 518
Query 392 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCACAGGTTTTGCTCTTGACATCTTATTTGCAATTGCAAATGGATTTTCCCCCTCATATGAGTTCTTTGCAGTA 592
Query 466 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAGTGTGTGGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 593 ACTCGCTTCCTGGTGGGCATGATGAATGGAGGGATGTCGCTGGTGGCCTTTGTCTTGCTTAATGAATGTGTGGG 666
Query 540 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTCTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 613
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 667 CACCGCCTACTGGGCACTTGCAGGATCGATTGGCGGCCTGTTCTTTGCAGTTGGCATTGCCCAATATGCCCTGT 740
Query 614 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAGGATACTTCATCCGCTCCTGGAGGACCCTAGCCATTCTGGTTAACCTGCAGGGAACGGTGGTCTTTCTCTTA 814
Query 688 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTTTATTCATTCCTGAATCACCTCGTTGGTTATACTCCCAGGGTCGACTGAGTGAGGCTGAAGAGGCGCTGTA 888
Query 762 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTCATTGCCAAGAGGAACCGCAAACTCAAGTGCACGTTCTCACTAACACACCCAGCCAACAGGAGCTGCAGGG 962
Query 836 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTG- 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGACTGGAAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGACACACTTTGATCCTGATGTTCATCTGA 1036
Query 909 --------------------------GTT----------TGTGTGCAGCTTGGTG-------TATTATG----- 934
|.| ||| ||..||||||.| .||||.|
Sbjct 1037 ACCATCACAGCACTAGGAATATCACAGATGCATAATAAATGT-TGAGGCTTGGAGGCATGGAGATTAAGAAAAC 1109
Query 935 --------GCCTAACTCTGA-------------GTGCGGGTGATCT-AGGT---------------GGAAGTAT 971
|||.||| |||| |.||.|.|.||.| |||| |.||.||.
Sbjct 1110 CGTTGAAAGCCAAAC-CTGACAACACAACATAGGAGCTGCTAATTTGAGGTTCTACCCATTCAAAAGCAAATAC 1182
Query 972 TTATGCCAACCT----------------GGCCC------------------TGTCTGGCCTCATAGAGATTCAA 1011
||| |||..| |||.| |||.| |.||||||.|.|||.
Sbjct 1183 TTA---CAAAGTATGTTCAGGTACTTAGGGCTCCATAAAACTTTACATTTGTGTAT---CACATAGACAGTCAG 1250
Query 1012 TCTTACCCTCT--CTGT---------ATCTACTT------GATTAACCAAAAAT-------------------- 1048
|| |.||||| || | |.|||||| |||||..||..|.|
Sbjct 1251 TC--AACCTCTGCCT-TGGAGGAACCACCTACTTGTTGCAGATTATTCACTATTTTTATTTTTTCCCCCATGTA 1321
Query 1049 ------------GGTT-TGGTC------GG--AAGCGAACATTATCAGCATTTCTGTGCCTAGG---AGG---A 1095
|||| |||.| || ||.|.|||| |.|| |...||...|.|||| ||| |
Sbjct 1322 TATTAACTTCTGGGTTCTGGCCTTCAATGGATAAACAAACA--AACA--AACCCTAGACTTAGGGCCAGGGAAA 1391
Query 1096 CTG-GCTTGTCTTATTGTAATGTTTCTTCCAGA---AAAGAAAGACAC----------AGG-TG----TGTTTG 1150
||| .|.||| |.|||.|| ||||||.||.| |||.|| || ||| || ||||..
Sbjct 1392 CTGTCCCTGT-TCATTTTA---TTTCTTACACAGCCAAATAA----ACTTCTTCCCTGAGGCTGAGAATGTTAA 1457
Query 1151 CAGTGGTGA--------ACAGCCATTCC-----TTGTCCTTGCTGGGGAAGCTGACCATCAGTGCTGCCTTTAA 1211
.|...|||| ||||.||.||| |||.|.||..|...||||.|| ||.|||
Sbjct 1458 AACATGTGATAATAGAGACAGTCACTCCACATATTGCCGTTCTTTTTGAAGATG--------------CTATAA 1517
Query 1212 CATTGTTTATATCTACACCTCTGAGCTTTACCCTACAGTCA-TCAGGAATG-------TTGGGCTTGGAACT-- 1275
.||| .|.|.|||| .|||||.|..| |.|||| |||.|||.| |.|||.||..||.|
Sbjct 1518 AATT-CTAAAATCT---TCTCTGTGGAT-------CTGTCATTCAAGAAAGCCTTAACTGGGGATTCAAATTAT 1580
Query 1276 ------------------TGTTCC-------ATGTTCTCCCGAGTTGGTG----------GGATTATTGCTCCC 1314
|||||| ||.||| |.|.| |.||| ..|||||
Sbjct 1581 ACCTCTGTGTTAAACATCTGTTCCTTTAGTTATTTTC-CACAA--TAGTGCCTTTTTAAATAATTAT------- 1644
Query 1315 TTCATCCCCT-----CACTG--AAATA-TGTGCAATGGTCTTTACCATTCATTGTCTTCGGAGCC--------- 1371
||.||.|.|| .|||| ||||| |.||||| |..|||...||| |||| ||.||.|.|
Sbjct 1645 TTGATGCTCTAAATATACTGTTAAATATTATGCAA--GCATTTTAGATT--TTGT-TTGGGGGACATAAAGAGG 1713
Query 1372 ---------------------------ACGGGTC----TGACCTCC-----------GGCCTCCTGAGTTTGTT 1403
|.||.|| |||||..| |||..|
Sbjct 1714 ATTGAAATGATTTTAATAGCTGTAATTATGGATCCCAATGACCAACTCTATGACGAAGGCAAC----------- 1776
Query 1404 ATTGC----CGGAGACCCTTA---------ACAGTCCGC------TGCTAGAAACAT--TCTCCGACC-TTCAG 1455
|||| |.|||.||| | |||.|..|| |||| .||| ||||| || |||
Sbjct 1777 -TTGCAGAGCAGAGGCCC--AGCCCTGGGGACAATGGGCCTTCCATGCT----TCATGCTCTCC--CCGTTC-- 1839
Query 1456 GTGTATTCGTATCGCA-----GGCTGGGAGAAGAA---GCATTAT----CTTTACAGGCT---------TTGGA 1508
|.||.|| .||||||| |..|| .||.||| ||..||.|||| |||
Sbjct 1840 ---------TCTCTCACCACCAGCTGGGA-ACTAAATTCCACTATTGTCCTGAACTGGCTTGTCTATTCTTG-- 1901
Query 1509 CCCCCAAC-----AGTGTGTGGACA-------------AGGAGAG-CTCTTTAGG------------------- 1544
|||..|| |.||| .||| |||.|.| ||||.|..|
Sbjct 1902 -CCCTGACTTGATACTGT---CACAGCTTGATTTAAATAGGGGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGT 1971
Query 1545 --------GAGTGAGAGTGAGGAAGAGGAAGAATTT-TAT----GATGCAGATGAAGAGACTCAGATGATCAAG 1605
|.|||.|.|||.||..| |||||| ||| .||||| |||.||||.||||..|.|||.
Sbjct 1972 GTGTGTATGTGTGTGTGTGTGGCTG-----GAATTTCTATTGTAAATGCA---GAACAGACACAGAAAACCAAC 2037
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2038 TGGGAAACAGCATTATGTAAATGCTGTTTCTGCAGGTGTAAGGGATTTTAAAAACGTTTTAGAAAACTGCATGG 2111
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2112 ATTTAAATTTATTTTGCCTTCTGCTTTCATGCAAGATACCTGGGAGACAGTGAGAACAGACAATGCAGTGTCAC 2185
Query 1606 -------------------------------------------------------------------------- 1605
Sbjct 2186 CTTGCATCCTTACATGTGATGTCCTGGCTACAATCCTGCCCGTTGTCCTTGGTTTGTGTGCAGCTTGGTGTATT 2259
Query 1606 ----------------------------------------------------------------- 1605
Sbjct 2260 ATGGCCTAACTCTGAGTGCGGGTGATCTAGGTGGAAGTATTTATGCCAACCTGGCCCTGTCTGGC 2324
