Nucleotide Global Alignment

Description

Query:
TRCN0000471412
Subject:
NM_001331209.1
Aligned Length:
2202
Identities:
871
Gaps:
1203

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCGGCTGCTGCGGCTGTGGTGGGTTGGTTGGGCTGGGTGCTTGCCGCGTTCTGTCTGGGCAGCACCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGGGAGGCGGCGCCGGCGCCGGGCGCGGGACTGCTGAACTTCTGCACGGAAGAGGACAGCGCACCGGGCGCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTCCCTGCGCGGAAGGGCAGCGCCAGAGGCCACTTTGTGCTTGCGACTCTTCTGCTCCGGCTTGGCCAACAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCTGGACCTGGGTAGCCGCCGAGGGCGCAGGCTGCCCGGAGGGCGGACGGGCCACGGAGCCCGAGGAGGCGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCCCCGACGGGCGAGTGGCGCGCGCTGCTGCGCCTGCGCGCCGAGGCCGGCCACCCGCGCTCCGCGCTGCTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGGTGCGCGTGGAGCCGGGTGGTGGGGCCGCGGAGGAGGCGGCGCCGCCCTGGGCGCTGGGGCTGGGGGCGGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCTGCTGGCCCTGGCGGCGGTGGCGCGCGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCGGCCGAGGTGCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGTGCTGCGCGAGAGCGGCTCGGAGGCGGAGCGCGCGGCGGCGCGGCGCCTGGAACCCGCGCGGCGCTGGGCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGCGCCCTGGGCGCGCTGCTGCTTCTGGCCAGCCTGGCGCAGGCGGCACTGGCCGTGCTGCTGTACGGGGCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGCCAGCGCGCCGTGCCCGCCGTGCTGGGTTGCGCGGGGCTGGTGTTCCTGGTGGGTGAGGTGCTGCCGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGCCGTGAGCGGACGCTGGGCGCTGGCGCTGGCGCCGCGCGCGTTGGGCCTCAGCCGCCTGGCGGTGCTGCTCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTTGCCCGTGGCGCTGCCGGTCGGGCAGCTGCTGGAGCTGGCAGCGCGGCCGGGGCGTCTGCGGGAGCGCGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGGAGCTGGCGCGCGGCGGCGGCGACCCCTACAGCGACCTCAGCAAGGGAGTGCTGCGCTCCCGGACCGTGGA  962

Query    1  -------------------------------ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCA  43
                                           |||||||||.||.||||.||.||.||||||.|||||||.||||
Sbjct  963  GGACGTGCTCACGCCGCTCGAAGACTGCTTTATGCTGGACTCCGGCACTGTCCTAGACTTCAGCGTCCTCGCCA  1036

Query   44  GCATCATGCAGAGCGGCCACACGCGCATCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTAC  117
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GCATCATGCAGAGCGGCCACACGCGCATCCCAGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTAC  1110

Query  118  CTCAAGGACTTGGCCTTCGTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCC  191
            |||||.||||||||..||||.||.|||||.||||||||.|||||||||||||||||.||.||||||||||||||
Sbjct 1111  CTCAAAGACTTGGCTATCGTTGAGCCCGAGGACTGCACACCGCTCAGCACCATCACCCGCTTCTACAACCATCC  1184

Query  192  GCTCCACTTCGTCTTCAACGACACCAAGCTGGACGCTGTCCTGGAGGAATTCAAGCGAGG--------------  251
            .||||||||.|||||||||||.|||||.||||||||||||||||||||.|||||||||||              
Sbjct 1185  ACTCCACTTTGTCTTCAACGATACCAAACTGGACGCTGTCCTGGAGGAGTTCAAGCGAGGCAAGTCCCACCTGG  1258

Query  252  ---------AGA----------------------------------------------------CACCGTGGTG  264
                     |||                                                    ||||.|||.|
Sbjct 1259  CCATTGTGCAGAAGGTGAACAATGAGGGCGAGGGCGACCCCTTCTACGAGGTGCTGGGCCTGGTCACCCTGGAG  1332

Query  265  AA-------GAGG--------AAGCCTG----CTT------CTCTGATG-------------------------  288
            .|       ||||        |||.|||    |||      .|||||.|                         
Sbjct 1333  GACGTCATCGAGGAGATCATCAAGTCTGAGATCTTGGATGAGTCTGAAGACTACTACACAAAGGTGAGGAAGAA  1406

Query  289  ----------------GCCCCTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGGTGTCTGATGATGAATATA  346
                            ||.|||||.|||||.||||||||.||||||||.|||||||||||||||||||||||||
Sbjct 1407  GACCGTCGCCCTGGGAGCTCCTCTCAAGCGAAAGGAGGAATTCTCCTTATTCAAGGTGTCTGATGATGAATATA  1480

Query  347  AAGTAACAATCTCGCCTCAGCTGCTCTTGGCCACCCAGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCG  420
            ||||||.|||||||||||||||||||.|||||||||||||||||||.||||||||.||||||||.||||||||.
Sbjct 1481  AAGTAAAAATCTCGCCTCAGCTGCTCCTGGCCACCCAGCGCTTCCTTTCCCGAGAGGTGGATGTGTTCAGCCCA  1554

Query  421  CTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGA  494
            .||||..||||||||||.|||.|||||||||||.|||||||||||||||||||||||||.||||.|||||||||
Sbjct 1555  TTGCGAGTCTCTGAGAAAGTCTTGCTGCACCTGCTGAAGCATCCCAGTGTCAACCAGGAGGTGACGTTTGACGA  1628

Query  495  GAGCAACCGGCTGGCCACACACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGC  568
            |||||||||.||||||.|||||||.||.||||||||||||||||||||.||.|||||||||||||||||.||||
Sbjct 1629  GAGCAACCGCCTGGCCGCACACCATTATCTGTACCAGCGCAGCCAGCCAGTAGATTACTTCATTCTCATTCTGC  1702

Query  569  AGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTG  642
            |||||||.||.||.||.||.||.|||||||||||.||||||||.|||||.||||||||||||||||||||||||
Sbjct 1703  AGGGCAGAGTCGAGGTCGAAATTGGGAAAGAGGGCCTGAAGTTCGAGAACGGGGCCTTCACGTACTATGGAGTG  1776

Query  643  TCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCA  716
            ||.|||||.||.|..||||||||.|.||||||||||||.|||||.||.|.|||||.|||||||||||||.||||
Sbjct 1777  TCCGCCCTGACAGCCCCATCCTCAGCTCACCAGTCCCCAGTGTCTTCACGCCAGCTCATCCGCCATGACGTGCA  1850

Query  717  GCCCGACCCAGGTGACGGCACGCATTCATCTG--CGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCT  788
            |||.||.||||..||.||.||.|..||  |||  |.||.|||||.||||||||.||||||||.||.||.||.||
Sbjct 1851  GCCTGAACCAGCCGATGGTACCCGCTC--CTGCACATACTGTCCTGACTACACTGTGAGGGCCCTTTCCGACCT  1922

Query  789  GCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGT  862
            |||||||||.|||||.||.||.|||||||||||.||||||||||||||||||||||||||.|.|.||||.|..|
Sbjct 1923  GCAGCTCATTAAGGTCACACGGCTGCAGTACCTTAATGCACTCCTGGCTACCCGAGCCCAAAGCTTGCCTCCAT  1996

Query  863  CCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAG-C  935
            ||||.||||||.|.||.||.||||.|||.|||||||||||||||||||||||||||||.|||.||| .|.|| |
Sbjct 1997  CCCCAGAGAACGCTGAGCTCCAGGCTATCCCAGGCAGCCAGACCAGGCTCCTTGGTGACAAGTCCA-GAGAGAC  2069

Query  936  GGCAGGGTCCAGCCACAGCAGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGGACAGTGCGGCATATTCAGATT  1009
            .||||||||||.|.|||||||.||||||.|           |||.|.|.|||                      
Sbjct 2070  AGCAGGGTCCACCAACAGCAGACCCAGCAT-----------CCCAGTGGAGG----------------------  2110

Query 1010  CAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGGCCG  1065
             |||.|.|  |||||.||   |||..| |||||                       
Sbjct 2111  -AGAGCCC--TGGGCGGA---ACCCAG-GAGTG-----------------------  2136

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