Construct: ORF TRCN0000471412

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017547.1_s317c1
Derived from:
ccsbBroadEn_15784
DNA Barcode:
ATTGACTTGCACAAAAGTTAACAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNNM3 (26505)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471412
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26505 CNNM3 cyclin and CBS domain dival... NM_199078.3 48.7% 47.5% (many diffs)
2 human 26505 CNNM3 cyclin and CBS domain dival... NM_017623.5 45.4% 44.3% (many diffs)
3 human 26505 CNNM3 cyclin and CBS domain dival... XM_017003800.2 44.6% 43.8% (many diffs)
4 human 26505 CNNM3 cyclin and CBS domain dival... XM_011510957.3 43.8% 43.5% (many diffs)
5 human 26505 CNNM3 cyclin and CBS domain dival... XR_001738700.2 22.6% (many diffs)
6 human 26505 CNNM3 cyclin and CBS domain dival... XR_244887.5 22% (many diffs)
7 human 26505 CNNM3 cyclin and CBS domain dival... XR_001738701.2 20.7% (many diffs)
8 human 26505 CNNM3 cyclin and CBS domain dival... XR_001738702.2 15.9% (many diffs)
9 mouse 94218 Cnnm3 cyclin M3 NM_001331209.1 39.5% 38.8% (many diffs)
10 mouse 94218 Cnnm3 cyclin M3 NM_053186.3 39.5% 38.9% (many diffs)
11 mouse 94218 Cnnm3 cyclin M3 NM_001039551.2 39% 38.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1131
ORF length:
1065
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct ggacgccagc accgtgctgg acttcggcgt cctggccagc atcatgcaga
121gcggccacac gcgcatcccg gtgtacgagg aggagcgctc caacatcgtg gacatgctct
181acctcaagga cttggccttc gtggatcccg aagactgcac gccgctcagc accatcactc
241gtttctacaa ccatccgctc cacttcgtct tcaacgacac caagctggac gctgtcctgg
301aggaattcaa gcgaggagac accgtggtga agaggaagcc tgcttctctg atggcccctc
361tgaagcggaa ggaggagttc tccttgttca aggtgtctga tgatgaatat aaagtaacaa
421tctcgcctca gctgctcttg gccacccagc gcttcctgtc ccgagaagtg gatgtattca
481gcccgctgcg catctctgag aaggtcctgc tgcacctgtt gaagcatccc agtgtcaacc
541aggaagtgag gtttgacgag agcaaccggc tggccacaca ccactacctg taccagcgca
601gccagccggt ggattacttc attctcatcc tgcagggcag ggttgaagtg gagatcggga
661aagagggtct gaagtttgag aatggggcct tcacgtacta tggagtgtcg gccctaactg
721tgccatcctc ggttcaccag tccccggtgt cctcgctcca gcccatccgc catgacctgc
781agcccgaccc aggtgacggc acgcattcat ctgcgtattg tcccgactac accgtgaggg
841cgctctcTGA TCTGCAGCTC ATCAAGGTTA CGCGACTGCA GTACCTCAAT GCACTCCTGG
901CTACCCGAGC CCAGAACCTG CCACAGTCCC CTGAGAACAC CGACCTGCAG GTTATTCCAG
961GCAGCCAGAC CAGGCTCCTT GGTGAGAAGA CCACCACAGC GGCAGGGTCC AGCCACAGCA
1021GGCCCAGCCT TCCCCTTCTC CCCCGGGGCA GGGACAGTGC GGCATATTCA GATTCAGACC
1081TCTTTGGGCT GAGCCACCTT GTGAGTGCAG TTACTGCCTT TGTGTGGCCG TGCCCAACTT
1141TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1201CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1261CTTGTGGAAA GGACGAATTG ACTTGCACAA AAGTTAACAC ACGCGTTAAG TCgacaatca
1321acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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