Nucleotide Global Alignment

Description

Query:
TRCN0000471554
Subject:
XM_006506934.3
Aligned Length:
2376
Identities:
1645
Gaps:
555

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAGATACCTGCTCTCCTCCACGCCTGGTTTCTGGAGTTTGAAGCTACAGAAACTTTGCCTGGGTTGCCAGG  74

Query    1  -------------------------------------------------ATGTCTTCCAAGCGACCAGCCTCTC  25
                                                             |||||||||||||||||||||||||
Sbjct   75  ACATTCAGAGCACTTTGTGGAAAGCAAGCTAGCACTGAGCCGGACAGAGATGTCTTCCAAGCGACCAGCCTCTC  148

Query   26  CGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGG  99
            ||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||
Sbjct  149  CGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGAGGAGAGTGAGAGG  222

Query  100  CTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTC  173
            |||||||||||||||||||||||.|||                                               
Sbjct  223  CTCCCAGCCTTTCACCTTCCCTTACAT-----------------------------------------------  249

Query  174  TCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATGGAAGTTGATGGCAATA  247
                                                                      |||||.||||||||||
Sbjct  250  ----------------------------------------------------------GAAGTCGATGGCAATA  265

Query  248  AAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGT  321
            ||||||||||||||||.||.|||.||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  266  AAGTTATGTCTTCATTAGCTCCATACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGT  339

Query  322  GGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACAC  395
            |||||||||.||||.||..||||||||||.|||||.||.||||||||||||||.|||||.|||||.||.|||||
Sbjct  340  GGCGAGTCCGTGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTGGACAC  413

Query  396  CTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCT  469
            |.|||||||||||||.|||||||||||.|||||.||.|||||.|||||.||.||||||||||||||.|||||||
Sbjct  414  CCTGAAGCAGAGGAAGATGGAAGAGCTGATCAAGAATGAGCCAGAAGACACTCCCAGTATTGAAAAGCTACTCT  487

Query  470  CAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGC  543
            |.||||||||||||||||||||.||.|||||||||||.|||||||||||.|||||||||||||||||.||||||
Sbjct  488  CCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATAAAAGGGACTCCTGAGAGC  561

Query  544  TTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGC  617
            .|.||||||||.||..||||.|||||||||||||||||.|||||||||||.||.||.|||||.||..|||||||
Sbjct  562  CTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGC  635

Query  618  CCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGC  691
            ||||||||||||||||||..|.|||||.||||||||.|||||||||||||||||.|||||||||||||||||||
Sbjct  636  CCACGATGAGCAGAAGAAGTTGGCTGCATCTCAGATAGAGAAACAGCGTCAGCAGATGGAGCTGGCCAAGCAGC  709

Query  692  AACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAG  765
            ||||.||.||.||.||.||.||.||||||||||||||.||||||||||||||||||||.|||||.|||||||||
Sbjct  710  AACAGGAGCAGATCGCGAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTTCAGCAACAG  783

Query  766  ATC---CAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGC  836
            |||   ||||||||||||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||.||.||
Sbjct  784  ATCCAGCAGGTTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCTGACCAGCGGACCCTCGCAGC  857

Query  837  AGCTGCCCAGCAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTC  910
            ||||||||||||||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||||||||||
Sbjct  858  AGCTGCCCAGCAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCTGTTC  931

Query  911  AGCTGATCCCAACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTA  984
            |||||||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||.
Sbjct  932  AGCTGATCCCAACCACTATGGCAGCTGCTGCTGCAGCAACACCAGGCTTAGGCCCACTCCAGCTGCAGCAGTTC  1005

Query  985  TATGCTGCCCAGCTAGCTGCAATGCAGGTATCTCCAGGAGGGAAGCTGCCAGGCATACCCCAAGGCAACCTTGG  1058
            |||||||||||||||||.|||||||||||.|||||||||||||||||.|.||||.|||||||||||||||||||
Sbjct 1006  TATGCTGCCCAGCTAGCCGCAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAGGCCTACCCCAAGGCAACCTTGG  1079

Query 1059  TGCTGCTGTATCTCCTACCAGCATTCACACAGACAAGAGCACAAACAGCCCACCACCCAAAAGC----------  1122
            ||||||.||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||          
Sbjct 1080  TGCTGCCGTGTCTCCTACCAGCATTCACACAGACAAGAGCACAAACAGTCCACCACCCAAAAGCAAGGATGAAG  1153

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1154  TGGCCCAGCCACTGAACCTATCAGCTAAGCCCAAGACCTCTGATGGCAAATCACCTGCATCACCCACCTCTCCT  1227

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1228  CACATGCCAGCTCTGAGAATAAACAGTGGGGCTGGCCCCCTCAAAGCCTCTGTCCCGGCAGCATTAGCTAGTCC  1301

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1302  TTCTGCAAGAGTTAGCACAATAGGCTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCTCGCC  1375

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 1376  AGATGAAAGAGCAACTCAGGCGAGAGCAGCAAGCGTTGGACGGGAAGGTGGCCGTGGTGAACAGCATAGGTCTC  1449

Query 1123  ------------------AAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGA  1178
                              |||||||||||||||||||||||.|||||||||||..|||||||||||||||||||
Sbjct 1450  AGCAACTGCCGGACAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGA  1523

Query 1179  AGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAG  1252
            ||||||.|||||||||||||.||||||||||||||||.||||||||||||||||.|||||.|||||||||||||
Sbjct 1524  AGAAGGGAAATTTAGCCATGGAATGATGGATTTCAATATGAGTGGAGATTCTGACGGAAGCGCTGGAGTCTCAG  1597

Query 1253  AGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTC  1326
            |||||||||||||.|||||||||.|.||.|||||||||||.||.||||||||||||||||||||||||||||||
Sbjct 1598  AGTCAAGAATTTACAGGGAATCCAGGGGACGTGGTAGCAACGAGCCCCACATAAAGCGTCCAATGAATGCCTTC  1671

Query 1327  ATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAA  1400
            |||||||||||.||||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||
Sbjct 1672  ATGGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAA  1745

Query 1401  GATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCA  1474
            ||||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.|||||.||||
Sbjct 1746  GATACTGGGATCTCGCTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGCCTCA  1819

Query 1475  GCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGC  1548
            ||||.||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||.|||
Sbjct 1820  GCAAACAGCACCTGGAGAAGTACCCGGACTACAAGTACAAGCCTAGGCCAAAGCGCACCTGTCTGGTGGACGGC  1893

Query 1549  AAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGT  1622
            ||.||.|||||.||.||.||.||||||||.||||||||.|||.||.|||||||||||||.|||||||||||.||
Sbjct 1894  AAGAAACTGCGTATCGGGGAGTACAAGGCCATCATGCGGAACCGGAGGCAGGAAATGCGACAGTACTTCAACGT  1967

Query 1623  TGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGC  1696
            ||||||||||||||||||||||||.||.||.||.||.|||||.|||||..|.||||||||||||||.||.||||
Sbjct 1968  TGGGCAACAAGCACAGATCCCCATCGCGACGGCCGGAGTTGTATACCCCAGCGCCATCGCCATGGCAGGAATGC  2041

Query 1697  CCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGC  1770
            |.|||||||||||||||||.||||||||.||||||||.||||||||.|||||.||||||||.||.|||||||||
Sbjct 2042  CGTCCCCTCACCTGCCCTCCGAGCACTCGAGCGTGTCCAGCAGCCCGGAGCCCGGGATGCCCGTGATCCAGAGC  2115

Query 1771  ACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTA  1844
            ||||||||.|..||.|||||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||
Sbjct 2116  ACTTACGGCGCCAAGGGAGAGGAGCCCCACATCAAGGAAGAGATCCAGGCTGAGGACATCAACGGAGAGATTTA  2189

Query 1845  TGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGAC  1918
            .||.||||||||.|||||.|||||.||.||.|||||.|||||||||||||||||.||||||||.|||||.||||
Sbjct 2190  CGAGGAGTACGATGAGGAGGAGGAGGACCCGGATGTGGATTATGGGAGTGACAGCGAAAACCACATTGCGGGAC  2263

Query 1919  AAGCCAAC  1926
            ||||||||
Sbjct 2264  AAGCCAAC  2271

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