Nucleotide Global Alignment

Description

Query:
TRCN0000472008
Subject:
XR_002956469.1
Aligned Length:
3484
Identities:
1298
Gaps:
2185

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAACACGGAGCAAAAAGGCACTCGTCACGGCCCCATACGGCCCCGGGGCTAGTCGCCAGGGTCAAGGGTAGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAGCCCAGGGTTGCCGAGGCGGAGGACTGAGGCAGGGGCAGCTGAGGTAATCAGTCCAAAAACCAGCGTGCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCGTTTCCCCAGGGCTCTGTCCGGACTCTGAAGCACTGCATAAAGGGGTCTGTCTGAGCCCAATTTACTTCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGTGGGGAAGGGAAAGGGAAGACACCACCGGAAGCAAGGAAGGTGCTGTGTAATCATTAAGGAGCGGAGGCTTT  296

Query    1  -------------ATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGC  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGAGCTGCTAAAATGCCGGATTACCTCGGTGCCGATCAGCGGAAGACCAAAGAGGATGAGAAGGACGACAAGC  370

Query   62  CCATCCGAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATC  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCATCCGAGCTCTGGATGAGGGGGATATTGCCTTGTTGAAAACTTATGGTCAGAGCACTTACTCTAGGCAGATC  444

Query  136  AAGCAAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACAC  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGCAAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAATGAGCTCACTGGTATTAAAGAATCTGACAC  518

Query  210  TGGCCTGGCCCCACCAGCACTCTGGGATTTGGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGG  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGGCCTGGCCCCACCAGCACTCTGGGATTTGGCTGCAGATAAGCAGACACTCCAGAGTGAACAGCCTTTACAGG  592

Query  284  TTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAAATACATTATCAACGTAAAGCAGTTTGCC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTGCCAGGTGTACAAAGATAATCAATGCTGATTCGGAGGACCCAAAATACATTATCAACGTAAAGCAGTTTGCC  666

Query  358  AAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGTGG----------  421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct  667  AAGTTTGTGGTGGACCTTAGTGATCAGGTGGCACCTACTGACATTGAAGAAGGGATGAGAGTGGGGTAAGATTT  740

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct  741  CTATTTACAATAAATACTTTTCTTTCACTAAGGATACTGTCTCACATTCATATCCTTGGCTTTGTAGTGAATAA  814

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct  815  ATGGACTGAGTTCCTTGGAATACCAAAGGATGATCTAGTAATGTACTATAGTTGAAAATTCTGTCTTCTGCATC  888

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct  889  TGCTTCCTAACTTCCCATCGGCTTCGCTGACTCCCCTACTCCCACTGTTGTTTATTATGAATGGCTTCAAATTT  962

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct  963  CAGAGTTGAGGTTACCAGTCCATTTAAGGTAACATGGTATAGGTTGGGGGAGTACTTGCTTTAGGATAGTTGTG  1036

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1037  ATGCTAAGTGTGTTAATGTCTATAGAATACATAACAACTCACTTAGTAAATTAAAAAAAAATCTCCCCTCCCTC  1110

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1111  CTCAAAGGTTTGATTGCTGTTGGATAGGTTGTTTGCGACATTAGACATGTAGTTTAGTATCCTCAGATTTCATG  1184

Query  422  --------------------------------------------------------------------------  421
                                                                                      
Sbjct 1185  CTCTCTTTATTTCTCTTTATATAATTAGGGACTCTGTCTCTCTCTTGTTTTCTTAAAGTATGGTTTTGGGGATA  1258

Query  422  ---------------------------------------------------------------------GCGTG  426
                                                                                 |||||
Sbjct 1259  AAGGACTAAACATAAAAGCACTTTGAAAGCTTAAAGAATGTATTAATGACTATCTTTTTTACTTCCTTAGCGTG  1332

Query  427  GATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGC-------  493
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 1333  GATAGAAATAAATATCAAATTCACATTCCATTGCCTCCTAAGATTGACCCAACAGTTACCATGATGCAGGTAAG  1406

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1407  AAACTATGGGAGGGAAAAGGAAGGCTATGTCTTTTTTTTTTTTTTTTTTTGAGGCGGAGTTTCACTCTTGTCCA  1480

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1481  GGCTGGAGTAGAATGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCA  1554

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1555  GCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGT  1628

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1629  GTTTCACCATGTTGGCCAGACTGGTTTCGAACTCATGACCTCAAGTGTTTGGCCTGCCTCAGCCTCCCAAAGTG  1702

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1703  CTGGGATTCCAGGCGTGAGCCACTGAGCCCGGCAGTATTTTATATATATATTTTTTGAGACAGAGTCTCAGCCT  1776

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1777  GTCTTTATTTTACTAGTTTGTTTTTCATTCATTAGTGTCATAACAAGTTAATACAGCAAGTAGTTCCAGGGCAC  1850

Query  494  --------------------------------------------------------------------------  493
                                                                                      
Sbjct 1851  TGGGCAATGTATTCAATTTTTATTAAAATTCTCACTTGTGAGTTTTTCTTTTAAGGTATTAGGTCTATTCTATT  1924

Query  494  ------------------------------------------------------------AGGTGGAAGAGAAA  507
                                                                        ||||||||||||||
Sbjct 1925  GAATTTGGACAGTATCCAAAAAGCCTGTGACTGTATGTTGTACATTTCTGTCCCTCTCTTAGGTGGAAGAGAAA  1998

Query  508  CCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCC  581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CCTGATGTCACATACAGTGATGTTGGTGGCTGTAAGGAACAGATTGAGAAACTGCGAGAAGTAGTTGAAACCCC  2072

Query  582  ATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCG  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  ATTACTTCATCCAGAGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTGCTGCTCTTTGGTCCACCCG  2146

Query  656  GTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCT  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GTACAGGCAAGACACTCTGTGCGCGGGCAGTTGCTAATCGGACTGATGCGTGCTTCATTCGAGTTATTGGATCT  2220

Query  730  GAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAAAAA  803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GAGCTTGTACAGAAATACGTCGGTGAGGGGGCTCGAATGGTTCGTGAACTCTTTGAAATGGCCAGAACAAAAAA  2294

Query  804  AGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACA  877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  AGCCTGCCTTATCTTCTTTGATGAAATTGATGCTATTGGAGGGGCTCGTTTTGATGATGGTGCTGGAGGTGACA  2368

Query  878  ATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTCGAGGCAATATTAAAGTG  951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2369  ATGAAGTGCAGAGAACAATGTTGGAACTGATCAATCAGCTTGATGGTTTTGATCCTAGAGGCAATATTAAAGTG  2442

Query  952  CTGATGGCCACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGA  1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  CTGATGGCCACTAACAGACCTGATACTTTGGATCCAGCACTGATGAGGCCAGGGAGATTGGATAGAAAAATTGA  2516

Query 1026  ATTTAGCTTGCCCGATCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAG  1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  ATTTAGCTTGCCCGATCTAGAGGGTCGGACCCACATATTTAAGATTCACGCTCGTTCAATGAGTGTTGAAAGAG  2590

Query 1100  ATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAG  1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  ATATCAGATTTGAACTGTTAGCACGACTGTGTCCAAATAGCACTGGTGCTGAGATTAGAAGCGTCTGCACAGAG  2664

Query 1174  GCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGT  1247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GCTGGTATGTTTGCCATCAGAGCACGGCGAAAAATTGCTACCGAGAAGGATTTCTTGGAAGCTGTAAATAAGGT  2738

Query 1248  CATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAAC----------------------  1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct 2739  CATTAAGTCTTATGCCAAATTCAGTGCTACTCCTCGTTACATGACATACAACTGAACCCTGAAGGCTTTCAAGT  2812

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 2813  GAAAACTTTAAATTGGAATCCTAACCTTATATAGACTTGTTAATAACCAATTCATAAACAAATAAATGGCTTCA  2886

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 2887  AAATTGTATGCTTTTTTCCATATCTCTTCTTGTAATATAATAAAAGGTGATTTCTAATGTTATTAGGCAGAAAA  2960

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 2961  GCTTGTTAGAATATATTTTGACTATTTTTTTGACCCACACCCGTTTAAGGATTTCACATCATACAAAGCGCTTG  3034

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3035  CTTAGATGGCTTCTATCCTAGGCATATGCTGGCCGGGTGCTCTACATATAAATTCTCATTGTATCCTCCCATCT  3108

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3109  GTCCACTGAGGAAGATTATCAAATGGATCTTCATCCAATGGATGCATAAACTTTCCTACTTACTTGTAGTGGCA  3182

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3183  AAGCTGGCTTTCAAGTACAAGTTTGTTGGCTCCATTACCTATGCTCCTATTATCCGCTTCTGTCCCGCAACAAA  3256

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3257  GTAGCTCACTTAGGCGTATGACCACATGCATTATGATAGTTTCCCACCACCATATTGAATAATAAAAGCTTTGG  3330

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3331  CCAAAGCTTTTTTAAAGTAGGAGAAACATTGGATGTATATGTTTTGCATTGCCATTTGATTTCAAATTAATCAG  3404

Query 1300  --------------------------------------------------------------------------  1299
                                                                                      
Sbjct 3405  GAAGAATTAGTGATTTTAATGAGCAGTAAAGTGGTGCAATAAAGCAGAAAGAAAAATGTTCAGCCAGAAGTGAA  3478

Query 1300  ------  1299
                  
Sbjct 3479  AGACTA  3484

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