Nucleotide Global Alignment
Description
- Query:
- TRCN0000472194
- Subject:
- XR_001755204.1
- Aligned Length:
- 3872
- Identities:
- 1288
- Gaps:
- 2562
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCAGTGAGGGGCCACCCGGGGCACAGGAAAGGGCCGCTAGGGGAGGGCCGGGTGCACTCGGGGTGTCTGGGCC 74
Query 1 --------------------------ATGGCCAGCGACGGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGC 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GCGGGTCTGAGGGATGAGGAGGGGCCATGGCCAGCGACGGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGC 148
Query 49 AAGCTCCCGGGCAG------------------------------------------------------------ 62
||||||||||||||
Sbjct 149 AAGCTCCCGGGCAGGCCCTTGGCTGCCACTTTGATGTCCCACTGATTCCACTGCTCCTGGCCTTCAGATCAGCA 222
Query 63 -------------------------------------------------------TTTGCTCAGGTCCACGGCC 81
|||||||||||||||||||
Sbjct 223 TCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCACTTTGCTCAGGTCCACGGCC 296
Query 82 AAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGCAATACCAGCGATGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGCAATACCAGCGATGC 370
Query 156 CTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAACTCCGAGGTGGTCATGG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAACTCCGAGGTGGTCATGG 444
Query 230 AGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCAGGAGGGGCCAGGGCTT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCAGGAGGGGCCAGGGCTT 518
Query 304 CAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGCTGGTGAAGTCGGTCAG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGCTGGTGAAGTCGGTCAG 592
Query 378 TGAGAGCCACACGTCCTGTCCTGCA------------------------------------------------- 402
|||||||||||||||||||||||||
Sbjct 593 TGAGAGCCACACGTCCTGTCCTGCAGAAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTCCCAGTCTCTCCCAC 666
Query 403 -------------------------------------------------------------------------- 402
Sbjct 667 ACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGCTGAGCGAAAGAGAG 740
Query 403 ------------------------------------------------------GAGGAATTACGGAGGTTGAG 422
||||||||||||||||||||
Sbjct 741 GCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTGAGGAATTACGGAGGTTGAG 814
Query 423 CTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTACCTTCCCGCCAATGTAG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTACCTTCCCGCCAATGTAG 888
Query 497 ACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCACTATTACGATTCTAGG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCACTATTACGATTCTAGG 962
Query 571 AACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGTTGAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGTTGAT 1036
Query 645 CCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGCCACCCAGCCAGTGGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGCCACCCAGCCAGTGGAT 1110
Query 719 ACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATACATAGAGGCAGAGGAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATACATAGAGGCAGAGGAG 1184
Query 793 GTGGACACGGTGGACGTCTCCGGCGTGCCCGCAGAGGTGCTGTGCAACATCGAGGCCGACACCTACTGGTGCAT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GTGGACACGGTGGACGTCTCCGGCGTGCCCGCAGAGGTGCTGTGCAACATCGAGGCCGACACCTACTGGTGCAT 1258
Query 867 GAGCAAGCTGCTGGATGGCATTCAGGACAACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAGCAAGCTGCTGGATGGCATTCAGGACAACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGT 1332
Query 941 TAGAAGAACTCGTGAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TAGAAGAACTCGTGAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAG 1406
Query 1015 TTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACAC 1480
Query 1089 CTACCAGTCTGAACCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTTCTCGTGAGATGGAGGA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTACCAGTCTGAACCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTTCTCGTGAGATGGAGGA 1554
Query 1163 AGGAAATACTAGAAGAAAAAGATTTTCA------------------------------AGAGCT---------- 1196
|||||||||||||||||||||||||||| |.||||
Sbjct 1555 AGGAAATACTAGAAGAAAAAGATTTTCAAAGGGAAAACCCAAGGCTCGGAGAAACCACAAAGCTGCCCAAAGAG 1628
Query 1197 ------------------------------------------------------------------GCTGCTCT 1204
||||||.|
Sbjct 1629 ACGCAGCCCCTCCTGGGGGCCGGGATGGGAACTCGGGCAGGGGCATCCACAGGCTCAGCCCCCCGAGCTGCTGT 1702
Query 1205 TCCTCCAGAACCTGCC-CA-CAG---CCCAC-TG-GGATGA--TGAGGACAT--------------------CA 1249
||| |||||| || ||| ||||| || |.||.| ||.|||||| ||
Sbjct 1703 TCC-------CCTGCCACATCAGCGACCCACGTGTGTATCATTTGTGGACATGTCTGTGAAGACGGAAAGCACA 1769
Query 1250 G---------------CCTGTTGCTG-GCCGAGG--CCT----ACCGCCT---CAAGTTTGCTTTTGCCGA--- 1295
| ||||.||||| |..|.|| ||| .|.|||| .||||...|.|.||..||
Sbjct 1770 GGATGGAGAGAGGGCTCCTGCTGCTGTGGTGTGGGACCTTCGAGCAGCCTGTGGAAGTCATCCTGTGAGGAACT 1843
Query 1296 -----CGCCCCCAATCA--------------------CTACA-----AG--AAA-------------------- 1317
|.|||||||.|| ||.|| || |||
Sbjct 1844 GTGGCCTCCCCCAAGCAGCGCATATTGGAGGCAGAGGCTTCAGCCCCAGTCAAACCCTCAGATGATGGCAGCCC 1917
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1918 CAGCCAACGTCATGACGCAGCCTCTGGAGAGACCCTGAGCCAGGGCCACCCACCCGAACTTACCCTGGATCCTG 1991
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1992 ACCCACAGAAACTGCAAGTCGATAAAGGCACTGGGCTAAATGCATCAAAAGGATCTCACCATCTTCCCAGCAGC 2065
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2066 CCACAGGGAGCAGAGGTTTTCATTACCATCATTCTCAGAGGACACGACTGGGGCTCAGAGAGGGGAAGAAACCT 2139
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2140 CTCCAGCTTGCACAGCTGAGTCATTCCCCAAATGGATGAGACCCCAGCACAGGAGAAATGCATGACAGCCAGAT 2213
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2214 AATAAACCTGCATATCAGAACTGTCAGATCGTCTTCAGAGCAAAAGGCAACATGCTCTCCCGAGAACCCATGCT 2287
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2288 CTTAACCAGTGCATTGAGCTGCCTATTTTCTCACACCTATAGCAACATGAAATTGACAAATATTTTGATCATAG 2361
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2362 CCAACTTGGTAAGTAAAAAAAGAAAAAAATCTAATTTTAGTTTGCATTTTCTGTACTATGACCAAGGTTGAACA 2435
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2436 TTTCTTCAAATGTTTAAGAAATATGTTTTTCCCTTATGTGAACTGTTTTTAATTGTTGTCTTTTTTTCCTTTTA 2509
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2510 TCTATTGACTTTCTTATTGGTTTATAGAAGCTCTTTACATATTAAGCAGTCCTTCTGTGATATGGAATGCATGC 2583
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2584 ATTTTTCTATTCTTTTATGTCTTTCAACTTTATGGGTTTTTTAACATCACATAATTAAAAAACATTTATGTAGT 2657
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2658 CAAAATGTGCACATTTTTTGGTATGTATTTGTGTCTATGTGTGTGTGCATATTTAACATGCTGAGAAGTTCTGG 2731
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2732 CCGTCCTGAGATTTAAATAATTCTCTTTTGTCTTCTTCTAGTACTTTTATCAGTCCATTGAAGTCTTTCATCCA 2805
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2806 TCTGGAGATTTTTTTTTTCTGTAAAATGTGAGGGAGGGATTCCGTTTTTTCCCATACACCATTAATTGTATAAT 2879
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2880 CTATCTTCTCCTTTCACTGGACATTTTTCCTTTATAATATAGTAAATGTCCTCATGTGTTTGGGATCCTCCAAA 2953
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2954 TGTGTGTATGATCTGTGTATGAATGTAGGTGGATCACTTTAAAAATTCTTGTAATTTAACACATTTTACCAACT 3027
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3028 GATAGAGCTAGTCACTCAACTAATCTTTTTGGTGAGAACTTTTGAATCAGCATATCTGGTTTCTCAAAACATCC 3101
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3102 AGTTGATGTCTTTTATGAGGATAATTAACATCTTGATGTTGTCTAGCTTTCCTTTTCTAAAACATGGCATGTAT 3175
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3176 ATACATATTTTAAGTCTTCTTTATATCTAGTTCCATTTTAATTTTTAAAAAGTAGAGCTTGAACATTTCTTAGG 3249
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3250 TTTATTAGTAGATATTTTAATCATTTTTATTATAGCTTCTAATAAATTTTGTTTTAATATATAAAACCTATTGA 3323
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3324 CTTCCATATGCCAACTTCATGTCTATACTCTTAGTGAATTCTATCATTATTTGTAATAGTTTTTCGGTTAATTT 3397
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3398 TCTTGGAATTTCCAGATATATAATTATATAATCTGCAAATAATAATAATTGCATACTTTCTCAATTTTCATATA 3471
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3472 TCTTATTTCTTTCTCTTCTTTATGTTGGTATTTCTAGGATAATGTTCAATAATAGTAACAATAGTAGATCTCTT 3545
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3546 TGCCTTGTCTTAACTTTAACAGGAATGTTTATAGATATTATCTTATTAATTATAATGCTGACCTTTGGGATGAG 3619
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3620 ATAAATGCATTTTATCATATTAAGTATCCTGTCATTTTTGAGCAGTTGCAAAAATAAAAATATGGCTGTTGAGA 3693
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3694 TTTATCAGTGCTTTTCCAGCATAAATAAAGATGATTATATGATTTGCCTTTTGATCTAATAATATGGGGAATTA 3767
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3768 CATTAATAGATTTCCTAATGTTGAAACATCTGTGCGTTTCTGGAAAAAGGTAAGTTGTGTTTCTATTTTTCATT 3841
Query 1318 ------------------------ 1317
Sbjct 3842 AAATTTCCTAAAGATTTTGCTTTA 3865
