Nucleotide Global Alignment
Description
- Query:
- TRCN0000472194
- Subject:
- XR_001755205.1
- Aligned Length:
- 3962
- Identities:
- 1275
- Gaps:
- 2653
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAGTCTGTGCCCTTACCCATCACAGCCTCATCCTTATCTCCTCCATTCCCTAGGGGACTTAACAGGTGTTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATTATTACAGAGAAAGCTGACTCACTCACCAGGAATCTGATCCTGCTGTGGGCTGGCTTGGGTGGAGGTGTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCCGCCCCCGCACCCATCCTCCTGTTTGAACTCAGGCTGCTGCCTGCTGGGCCTGCCTGCCCTTGGAGCCCT 222
Query 1 -------------------ATGG-----CCAGCGACGGGG-----CCA--------------GGAAGCA----- 26
.||| |||| |..|||| ||| ||.||||
Sbjct 223 GCTGAGCTCAGCCTGAGGCCTGGCTCCTCCAG-GCTGGGGGAAAACCAGGCTTGCTGTGCTCGGCAGCAGAGAT 295
Query 27 -ATTCTGGA---AGC--GCAGCA------------ACAGCAAGCTCCC-----------------GGGCAGTTT 65
.||||||| ||| .||||| .|||||..|.||| .||||.|||
Sbjct 296 TCTTCTGGAGTGAGCATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCACTTT 369
Query 66 GCTCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GCTCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGA 443
Query 140 GCAATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAAC 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GCAATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAAC 517
Query 214 TCCGAGGTGGTCATGGAGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TCCGAGGTGGTCATGGAGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCA 591
Query 288 GGAGGGGCCAGGGCTTCAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGAGGGGCCAGGGCTTCAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGC 665
Query 362 TGGTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCA--------------------------------- 402
|||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TGGTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCAGAAAGTGCCAGCGATGCCGCCCCTCTGCAGAGG 739
Query 403 -------------------------------------------------------------------------- 402
Sbjct 740 TCCCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGC 813
Query 403 ----------------------------------------------------------------------GAGG 406
||||
Sbjct 814 GCTGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTGAGG 887
Query 407 AATTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AATTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTAC 961
Query 481 CTTCCCGCCAATGTAGACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTTCCCGCCAATGTAGACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCA 1035
Query 555 CTATTACGATTCTAGGAACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CTATTACGATTCTAGGAACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGA 1109
Query 629 GCCCTGAAGCGTTGATCCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GCCCTGAAGCGTTGATCCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGC 1183
Query 703 CACCCAGCCAGTGGATACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CACCCAGCCAGTGGATACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATA 1257
Query 777 CATAGAGGCAGAGGAGGTGGACACGGTGGACGTCTCCGGCGTGCCCGCAGAGGTGCTGTGCAACATCGAGGCCG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CATAGAGGCAGAGGAGGTGGACACGGTGGACGTCTCCGGCGTGCCCGCAGAGGTGCTGTGCAACATCGAGGCCG 1331
Query 851 ACACCTACTGGTGCATGAGCAAGCTGCTGGATGGCATTCAGGACAACTACACCTTTGCCCAACCTGGGATTCAA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ACACCTACTGGTGCATGAGCAAGCTGCTGGATGGCATTCAGGACAACTACACCTTTGCCCAACCTGGGATTCAA 1405
Query 925 ATGAAAGTGAAAATGTTAGAAGAACTCGTGAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGA 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 ATGAAAGTGAAAATGTTAGAAGAACTCGTGAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGA 1479
Query 999 AGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCA 1553
Query 1073 TCCGCCTGTGGGACACCTACCAGTCTGAACCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TCCGCCTGTGGGACACCTACCAGTCTGAACCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTT 1627
Query 1147 CTCGTGAGATGGAGGAAGGAAATACTAGAAGAAAAAGATTTTCA------------------------------ 1190
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 CTCGTGAGATGGAGGAAGGAAATACTAGAAGAAAAAGATTTTCAAAGGGAAAACCCAAGGCTCGGAGAAACCAC 1701
Query 1191 AGAGCT-------------------------------------------------------------------- 1196
|.||||
Sbjct 1702 AAAGCTGCCCAAAGAGACGCAGCCCCTCCTGGGGGCCGGGATGGGAACTCGGGCAGGGGCATCCACAGGCTCAG 1775
Query 1197 --------GCTGCTCTTCCTCCAGAACCTGCC-CA-CAG---CCCAC-TG-GGATGA--TGAGGACAT------ 1247
||||||.|||| |||||| || ||| ||||| || |.||.| ||.||||||
Sbjct 1776 CCCCCCGAGCTGCTGTTCC-------CCTGCCACATCAGCGACCCACGTGTGTATCATTTGTGGACATGTCTGT 1842
Query 1248 --------------CAG---------------CCTGTTGCTG-GCCGAGG--CCT----ACCGCCT---CAAGT 1282
||| ||||.||||| |..|.|| ||| .|.|||| .||||
Sbjct 1843 GAAGACGGAAAGCACAGGATGGAGAGAGGGCTCCTGCTGCTGTGGTGTGGGACCTTCGAGCAGCCTGTGGAAGT 1916
Query 1283 TTGCTTTTGCCGA--------CGCCCCCAATCA--------------------CTACA-----AG--AAA---- 1317
...|.|.||..|| |.|||||||.|| ||.|| || |||
Sbjct 1917 CATCCTGTGAGGAACTGTGGCCTCCCCCAAGCAGCGCATATTGGAGGCAGAGGCTTCAGCCCCAGTCAAACCCT 1990
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 1991 CAGATGATGGCAGCCCCAGCCAACGTCATGACGCAGCCTCTGGAGAGACCCTGAGCCAGGGCCACCCACCCGAA 2064
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2065 CTTACCCTGGATCCTGACCCACAGAAACTGCAAGTCGATAAAGGCACTGGGCTAAATGCATCAAAAGGATCTCA 2138
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2139 CCATCTTCCCAGCAGCCCACAGGGAGCAGAGGTTTTCATTACCATCATTCTCAGAGGACACGACTGGGGCTCAG 2212
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2213 AGAGGGGAAGAAACCTCTCCAGCTTGCACAGCTGAGTCATTCCCCAAATGGATGAGACCCCAGCACAGGAGAAA 2286
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2287 TGCATGACAGCCAGATAATAAACCTGCATATCAGAACTGTCAGATCGTCTTCAGAGCAAAAGGCAACATGCTCT 2360
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2361 CCCGAGAACCCATGCTCTTAACCAGTGCATTGAGCTGCCTATTTTCTCACACCTATAGCAACATGAAATTGACA 2434
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2435 AATATTTTGATCATAGCCAACTTGGTAAGTAAAAAAAGAAAAAAATCTAATTTTAGTTTGCATTTTCTGTACTA 2508
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2509 TGACCAAGGTTGAACATTTCTTCAAATGTTTAAGAAATATGTTTTTCCCTTATGTGAACTGTTTTTAATTGTTG 2582
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2583 TCTTTTTTTCCTTTTATCTATTGACTTTCTTATTGGTTTATAGAAGCTCTTTACATATTAAGCAGTCCTTCTGT 2656
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2657 GATATGGAATGCATGCATTTTTCTATTCTTTTATGTCTTTCAACTTTATGGGTTTTTTAACATCACATAATTAA 2730
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2731 AAAACATTTATGTAGTCAAAATGTGCACATTTTTTGGTATGTATTTGTGTCTATGTGTGTGTGCATATTTAACA 2804
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2805 TGCTGAGAAGTTCTGGCCGTCCTGAGATTTAAATAATTCTCTTTTGTCTTCTTCTAGTACTTTTATCAGTCCAT 2878
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2879 TGAAGTCTTTCATCCATCTGGAGATTTTTTTTTTCTGTAAAATGTGAGGGAGGGATTCCGTTTTTTCCCATACA 2952
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2953 CCATTAATTGTATAATCTATCTTCTCCTTTCACTGGACATTTTTCCTTTATAATATAGTAAATGTCCTCATGTG 3026
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3027 TTTGGGATCCTCCAAATGTGTGTATGATCTGTGTATGAATGTAGGTGGATCACTTTAAAAATTCTTGTAATTTA 3100
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3101 ACACATTTTACCAACTGATAGAGCTAGTCACTCAACTAATCTTTTTGGTGAGAACTTTTGAATCAGCATATCTG 3174
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3175 GTTTCTCAAAACATCCAGTTGATGTCTTTTATGAGGATAATTAACATCTTGATGTTGTCTAGCTTTCCTTTTCT 3248
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3249 AAAACATGGCATGTATATACATATTTTAAGTCTTCTTTATATCTAGTTCCATTTTAATTTTTAAAAAGTAGAGC 3322
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3323 TTGAACATTTCTTAGGTTTATTAGTAGATATTTTAATCATTTTTATTATAGCTTCTAATAAATTTTGTTTTAAT 3396
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3397 ATATAAAACCTATTGACTTCCATATGCCAACTTCATGTCTATACTCTTAGTGAATTCTATCATTATTTGTAATA 3470
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3471 GTTTTTCGGTTAATTTTCTTGGAATTTCCAGATATATAATTATATAATCTGCAAATAATAATAATTGCATACTT 3544
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3545 TCTCAATTTTCATATATCTTATTTCTTTCTCTTCTTTATGTTGGTATTTCTAGGATAATGTTCAATAATAGTAA 3618
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3619 CAATAGTAGATCTCTTTGCCTTGTCTTAACTTTAACAGGAATGTTTATAGATATTATCTTATTAATTATAATGC 3692
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3693 TGACCTTTGGGATGAGATAAATGCATTTTATCATATTAAGTATCCTGTCATTTTTGAGCAGTTGCAAAAATAAA 3766
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3767 AATATGGCTGTTGAGATTTATCAGTGCTTTTCCAGCATAAATAAAGATGATTATATGATTTGCCTTTTGATCTA 3840
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3841 ATAATATGGGGAATTACATTAATAGATTTCCTAATGTTGAAACATCTGTGCGTTTCTGGAAAAAGGTAAGTTGT 3914
Query 1318 ---------------------------------------- 1317
Sbjct 3915 GTTTCTATTTTTCATTAAATTTCCTAAAGATTTTGCTTTA 3954
