Nucleotide Global Alignment

Description

Query:
TRCN0000472287
Subject:
XR_001736987.1
Aligned Length:
4617
Identities:
205
Gaps:
4385

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTATATATACTATTCAGGGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAAC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGAT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGTGATCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGAAGTTCATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TAATGTTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAAATAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGATCCGATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  GAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTG  3552

Query    1  -------------------------------------------------------------------ATGGAGT  7
                                                                               |   |||
Sbjct 3553  CAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTA---AGT  3623

Query    8  CTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG  81
            ||.|||||||.|||||||||||||||||.|||..|.|||||||||||||||||||||.||.||||.|||||||.
Sbjct 3624  CTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAA  3697

Query   82  CGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATG--CACCACCACGCCCGGCTAA-TTTTGT  152
            |.|||||.||||||||||||||.||||||||||           ||  ||.||||||.|||.||||| ||||||
Sbjct 3698  CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG-----------TGCCCATCACCACACCCAGCTAACTTTTGT  3760

Query  153  ATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC--  224
            ||||||.||.||||||||||||..|||||||.|.||||||||||||||||||||||||||  |||||||.||  
Sbjct 3761  ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTC--GTGATCCGCCCG  3832

Query  225  ACCTCGGCCTCCCAAAGTGTTGAGA-------------------------------------------------  249
            .||| ||||.|||||||||.||.||                                                 
Sbjct 3833  CCCT-GGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGT  3905

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3906  CACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAA  3979

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3980  CGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCT  4053

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4054  GAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTT  4127

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4128  TATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACT  4201

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4202  CTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCAT  4275

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4276  TCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAG  4349

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4350  TAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTT  4423

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4424  TGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATC  4497

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4498  ACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGAT  4571

Query  250  -----------------------------  249
                                         
Sbjct 4572  AATAAATGTTCTTTATTTTAGAATAAAAA  4600

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.