Nucleotide Global Alignment

Description

Query:
TRCN0000472287
Subject:
XR_001744627.2
Aligned Length:
3652
Identities:
215
Gaps:
3405

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAGCCGTGCGGGCGCCCGCGTACTCACTAGCTGAGGTGGCAGTGGTTCCACCAACATGGAGCTCTCGCAGATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGAGCTCATGGGGCTGTCGGTGTTGCTTGGGCTGCTGGCCCTGATGGCGACGGCGGCGGTAGCGCGGGGGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTGCGCGCGGGGGAGGAGAGGAGCGGCCGGCCCGCCTGCCAAAAAGCAAATGGATTTCCACCTGACAAATCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGGATCCAAGAAGCAGAAACAATATCAGCGGATTCGGAAGGAGAAGCCTCAACAACACAACTTCACCCACCGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCCTGGCTGCAGCTCTGAAGAGCCACAGCGGGAACATATCTTGCATGGACTTTAGCAGCAATGGCAAATACCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCTACCTGTGCAGATGATCGCACCATCCGCATCTGGAGCACCAAGGACTTCCTGCAGCGAGAGCACCGCAGCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGAGAGCCAACGTGGAGCTGGACCACGCCACCCTGGTGCGCTTCAGCCCTGACTGCAGAGCCTTCATCGTCTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTGGCCAACGGGGACACCCTCCGTGTCTTCAAGATGACCAAGCGGGAGGATGGGGGCTACACCTTCACAGCCAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCAGAGGACTTCCCTAAAAAGCACAAGGCGCCTGTCATCGACATTGGCATTGCTAACACAGGGAAGTTTATCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGACTGCCTCCAGTGACACCACTGTCCTCATCTGGAGCCTGAAGGGTCAAGTGCTGTCTACCATCAACACCAAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAGATGAACAACACACACGCTGCTGTATCTCCCTGTGGCAGGTTGGAGTGCAATGGCAGGATCTTGGCTCACCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAACCTCCGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCCAAGTAGCTGGGATTACAGGCATGCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCACCATGCCCAGCTAATTTTTTATTTTTAGTAGAGGTGAGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCGGACCTTAGGTGAGCTGCCCGCCTGGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCACACCCGG  1036

Query    1  ----------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTG--------A  44
                                  |...||||||.||||||||||||||||||||||||||||  ||        |
Sbjct 1037  CCTTTTTTTTTTTTTTTTTCTGAGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGG--TGCAATCTCAA  1108

Query   45  TCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACT  118
            ||||.|||||||||||||||..|||.|||||||||||.||||||.|..|||||||||.|..|||||.|||||||
Sbjct 1109  TCTCAGCTCACTGCAACCTCCACCTACCAGGTTCAAGTGATTCTCCCACCTCAGCCTTCCCAGTAGGTGGGACT  1182

Query  119  ATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCT  192
            |.||.|||||.||||||||||.||||||||||||||||||.||.||||.|.|||||..|||||||.|.||||||
Sbjct 1183  ACAGGCATGCGCCACCACGCCTGGCTAATTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTGGCCAGGCT  1256

Query  193  GGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA----------------  249
            |||||.|||||||||||||||.|||||||| |||||||||||||||||||||.||.||                
Sbjct 1257  GGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCA  1330

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1331  CCGCGCCCGGCCAAAATAACTCTTTAAAGGTTTATATTATCCAGATATGAGGATTATCAACTTTCTCAGGAAAG  1404

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1405  AGATTGAGGGGTTTTACAGGAACAACATGCTCCGAAAATGAAGTTTTAAAGGCTTCTGGGTTGTATGGCAGATT  1478

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1479  TGTAGCCTCGTGTGGCTTCACCCCAGATGTGAAGGTTTGGGAAGTCTGCTTTGGAAAGAAGGGGGAGTTCCAGG  1552

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1553  AGGTGGTGCGAGCCTTCGAACTAAAGGGCCACTCCGCGGCTGTGCACTCGTTTGCTTTCTCCAACGACTCACGG  1626

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1627  AGGATGGCTTCTGTCTCCAAGGATGGTACATGGAAACTGTGGGACACAGATGTGGAATACAAGAAGAAGCAGGA  1700

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1701  CCCCTACTTGCTGAAGACAGGCCGCTTTGAAGAGGCGGCGGGTGCCGCGCCGTGCCGCCTGGCCCTCTCCCCCA  1774

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1775  ACGCCCAGGTCTTGGCCTTGGCCAGTGGCAGTAGTATTCATCTCTACAATACCCGGCGGGGCGAGAAGGAGGAG  1848

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1849  TGCTTTGAGCGGGTCCATGGCGAGTGTATCGCCAACTTGTCCTTTGACATCACTGGCCGCTTTCTGGCCTCCTG  1922

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1923  TGGGGACCGGGCGGTGCGGCTGTTTCACAACACTCCTGGCCACCGAGCCATGGTGGAGGAGATGCAGGGCCACC  1996

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1997  TGAAGCGGGCCTCCAACGAGAGCACCCGCCAGAGGCTGCAGCAGCAGCTGACCCAGGCCCAAGAGACCCTGAAG  2070

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2071  AGCCTGGGTGCCCTGAAGAAGTGACTCTGGGAGGGCCCGGCGCAGAGGATTGAGGAGGAGGGATCTGGCCTCCT  2144

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2145  CATGGCACTGCTGCCATCTTTCCTCCCAGGTGGAAGCCTTTCAGAAGGAGTCTCCTGGTTTTCTTACTGGTGGC  2218

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2219  CCTGCTTCTTCCCATTGAAACTACTCTTGTCTACTTAGGTCTCTCTCTTCTTGCTGGCTGTGACTCCTCCCTGA  2292

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2293  CTAGTGGCCAAGGTGCTTTTCTTCCTCCCAGGCCCAGTGGGTGGAATCTGTCCCCACCTGGCACTGAGGAGAAT  2366

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2367  GGTAGAGAGGAGAGGAGAGAGAGAGAGAATGTGATTTTTGGCCTTGTGGCAGCACATCCTCACACCCAAAGAAG  2440

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2441  TTTGTAAATGTTCCAGAACAACCTAGAGAACACCTGAGTACTAAGCAGCAGTTTTGCAAGGATGGGAGACTGGG  2514

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2515  ATAGCTTCCCATCACAGAACTGTGTTCCATCAAAAAGACACTAAGGGATTTCCTTCTGGGCCTCAGTTCTATTT  2588

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2589  GTAAGATGGAGAATAATCCTCTCTGTGAACTCCTTGCAAAGATGATATGAGGCTAAGAGAATATCAAGTCCCCA  2662

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2663  GGTCTGGAAGAAAAGTAGAAAAGAGTAGTACTATTGTCCAATGTCATGAAAGTGGTAAAAGTGGGAACCAGTGT  2736

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2737  GCTTTGAAACCAAATTAGAAACACATTCCTTGGGAAGGCAAAGTTTTCTGGGACTTGATCATACATTTTATATG  2810

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2811  GTTGGGACTTCTCTCTTCGGGAGATGATATCTTGTTTAAGGAGACCTCTTTTCAGTTCATCAAGTTCATCAGAT  2884

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2885  ATTTGAGTGCCCACTCTGTGCCCAAATAAATATGAGCTGGGGATTAAATACGAATAAGACATGGTTTCTGCCAT  2958

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2959  CAAAGATGGCTGGTGGGAGAGAGAGATACACCCTTATTAAGTGCTTTGTGTTAGTTTATTCATAGCTATTGTTA  3032

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3033  TATATGTCAAGGCAAGAGAGGACCAGAGCAGGACAGAGGCAATGGGTATTGAAGTTGAAGGGGTACATTTGATA  3106

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3107  AGAGAGTCGGTATTGAGAAGTTTAAATTTGTGAATTTGAAGGCTGCGTGGGTGTGGCAGGTAAGGGAAATGAGG  3180

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3181  TATCTGGGAAGGCTTGAGTGTAGGCAAATTTATTCATCCCAAGTCAAACTCTTGATCTCTCTCACGAAAACTAT  3254

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3255  GACCCCCCCTGGTTGCCCCTGACCTCTCAATGTTGGAACAAGCCACAACCGTGGAGTTATCCTTGATGACTCCC  3328

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3329  CATTCATTATCCCTTCTGTCCCACCACCACAGCTGTCATCTGTTCACCAGAACGTTCTTTTGGTTACACTCCAT  3402

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3403  GTGACATCCTGAGGCTGTTGCTTCTCTCCAGCTTTTCTGTTACCATCCTGGTCCTGGCTACTGTCACCTAGTGG  3476

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3477  GCCACTATAATATGGCTTCCTAATGGATCTTCCTGCTTCCTCTGTTGCCTCATTACTTTTCTATATAGCAGAAT  3550

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3551  GATCTTTTGAAAATGTGAACCAGATCACATTATTCCCTAGTTAAAACCCCCCAAGGCTTCCCATCACACTTGGA  3624

Query  250  --------------------------  249
                                      
Sbjct 3625  ATAAAATCCAAAAGAATTTTTCTAAA  3650

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.