Nucleotide Global Alignment

Description

Query:
TRCN0000472287
Subject:
XR_946652.3
Aligned Length:
4132
Identities:
217
Gaps:
3889

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGCCACCCTGGGGAAGGTGGATGCCGGAAGAGGCGTCGCCTGCGGGTCACCCAGAGGACACCCGGCGGGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCCGAGGGTGGGAGTGAGGAGAGGTAGGAGAGGCCACGGCAGAGGGAGGCCCCGCGCAGAGTGGGAACCATCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGGTGCGGGCCTGAACTTCCAGGGCCGGCTACTCCTCGGCAGAGCGACCGCGCGGTGTCTCAGAGCGCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGAGCCGCACTAAGAGCGCTGGACGGCGGGAGAGAGGCTCGGAGGACCGGTAGCTCCCAGCAAAGCGGCCCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGGATGTCGGGAGCTATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGCCCGCTGTGCCACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGGCTGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCGTGGCCGCGCGACCGACGGCCGCCTCACCTGCCCGCTGTGCCAGACGTGGAGACCACGTACTTCTGCAACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGTGCGGACAGCCCCTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGACATC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGGCCCTGGGTCAGCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACCTCTTGTTCTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACCGACAAGAAGTTGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCGGGCACACTGCGTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCCGTGAAGGCCCTGCAGACG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCACGCGGGAGGCCATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGCACAGCGCCGCCGAGGAGGAGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGCTATCCACGCCCTCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGAGCCAATACGAAGAGAAGGACAAGGCCTTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGGTCCACCTGGTCATCTGCTCCTCCTTCCTCAGCTTGGCCAACAAGGCTGAGTTCCTGGACCTGGGCTATGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTGATGGAGAGGCTGCAGGGCATCGTCACGCGGCCGCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTGACCACCGAGCTGAATTCGCGCGCTGTCTGGAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCAAGTGGTGCTAACACGCTGGCAGGGGGCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGAAAGATGTCGGGGTCACCCGTCCAAAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGGGCGAGAACACGCCCTTCGCAGAGCACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGAGCCTAAAGGACCAGGTACAGGAGCTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATGGGAGACGTCCTGCACAAGTCCCTGCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAGGGTCGTCTTCCAGGAGATTTGGGAGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTATGAAGGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCCAGACAGTTGGCTGCCGAGTGAACCCTCTGTCCCTGAGCTAACCCACATACTAGCAGAGGAGGAAGTCAGAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCGGCCACTAACCAGATGCAAATCCCCACACTCTTCCCCTTAGCGCTTGACCGTGCCTCCCAGCTGCTAACTGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCTCAAATGATGCATGTGAGCCCAGCTCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGACCACCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCACCAAGCAGATCACGCCCTACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTTCAGGCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCCGTGGATGAGCAGTCAGAGAGTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGCCAGGAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAATCCAGGAAGTGTCCCGGAAAAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGAACGGCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCTCAGAAGAGCCTCTACTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTCCCCACA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGAGGGAACACCCGACTTAGCAAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGACTGGGA  2294

Query    1  -----------------------------------------------------ATGGAGTCTCGCTCTGTTGCC  21
                                                                 |||||||.|||||||||||||
Sbjct 2295  CACTGGACAGAAGGTTGTTCCCATGATGGTTTTTTTTATTTTTTATTTTTGAGATGGAGTTTCGCTCTGTTGCC  2368

Query   22  CAGGCTGGAGTGCAGTGGCCTG--ATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGC  93
            ||||||||||||.|.|||  ||  ||||||||||||||||||||||||||||..|||||||||||||||.||||
Sbjct 2369  CAGGCTGGAGTGTAATGG--TGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGC  2440

Query   94  CTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCAC----CACCACGCCCGGCTAA--TTTTGTATTTTTGGT  161
            ||||||||||.||||||||||||.|    |||.||.|    ||||||||||.|||||  ||||||||||||.||
Sbjct 2441  CTCAGCCTCCCGAGTAGCTGGGATT----ACAGGCGCCTGACACCACGCCCCGCTAATTTTTTGTATTTTTAGT  2510

Query  162  CGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-ACCTCGGCCT  234
            .||||.|||||||..|||||||.|.|||||||||||..|||.||.|||||||.|||||||||| .||||.||||
Sbjct 2511  AGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACGCCAGACCTCAGGTGATCCACCTGCCTCAGCCT  2584

Query  235  CCCAAAGTGTTGAGA-----------------------------------------------------------  249
            |||||||||.|||||                                                           
Sbjct 2585  CCCAAAGTGCTGAGATTACAGGGGTGAGTCACCGCGCCTGGCCAATGTTGTTGTTGTTTTTAAGACAGAATTTC  2658

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2659  ACTCTTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCTGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAG  2732

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2733  CGATTCTCCTACCTCAGCCCCCAGAGTAGCTGGGATTACAGGCATGTACCATCACACCCGGCTAATTTTTTGTA  2806

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2807  TTTTAAGTAGAGAGGGGGTTTCTCCATGTTGGTCAGGCTGGCCTCGAACTCCCAACCTCAGGTGATCCGCCCAC  2880

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2881  CTCGGCCTCCCAAAATGCTGGGATTACAGGGGTAAGCCACTGTGCCCGGCCGGTTATTTCTTTAAAAGGTAATC  2954

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2955  ATTTGTCAAGAGTAAAACCCAGAAGCTCTGACAGGCCATAATTTCAGATCCTTTGGCTTGGGCAGTTTTGATTT  3028

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3029  TCCCCGTGTTTGCATGGCATGAAGTCTTCGTCCTTGTCACAGTAGCTTGGGATGACTCCCAGTCCACATGGAAA  3102

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3103  ACATCAGGGAGTGACAATCCAGCAAGAAATCCCTCGCTAGTTCCACACCTACGCACCGAGCGTCGGTGTGCCAG  3176

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3177  GCCCTGTGCTGGGCAGAGTGTGGTATGTCAGGGTGTGCCGGTTTTAGGTAACAAGACTCCACCACTGAGTGGCA  3250

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3251  CCTGCCCTATTGCAAAGGAATCCAGTTCCTCCGGAATAACAGTCCCACTGTTAACCTGGTGCTACTGGGAAGTT  3324

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3325  CCACACAGTAATCTGAGCAGTGACTCATGGAAGGATGAGGAACGTTTGCTCCAGCTTCTCTCCCTTTCCAGCAA  3398

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3399  GGGCAGAGCTCCTAAAGCCAGGGGTTAGCACCTGGCCAGCTTATGTGGCAGATGGTCTCAGTTACAACTTCGCT  3472

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3473  GCTTTCCCAAACTCCTGCAGCCCTCCTGAGTCCGACTTCCGTTGATAGCAAGGCACTGGGTGGCAGCAACCTTT  3546

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3547  TTTCTAGTAGTTTTTTCCCAGCAGTTTTCCATTTCTCCACAGTATCCTTTTCATTTAGAGGAGCTTAATAAATG  3620

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3621  CTTTTTAAAAAGTAACCCACGTGACGTAAAATTTTACAAGTTTTTGTGGCAAAATGATGCCCAGATAGTCACAT  3694

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3695  TTAAGCAAATATTCAGCTTGATTCAGTGATTAACAGCAAATGGGTCTACGTGCTAACATGGCAGCACATTCAAC  3768

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3769  ACATAACACATCACTCACATTGACGTCCACTGTCCCTGCACCTGCTACTTCAGGGGCACTGAGGCTCCTGTTCC  3842

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3843  AAGGCCTTACAAACCTATGTGGTGGCCTGCAGGGCAAAAGGAATTATCATTACAACTGGTTAGAGGTAGGAATT  3916

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3917  CAGAAAGAAATTGAGGAGGCCAAACACACGTCGTTTGAGGCTAAAGGCTTAAGACGCTTCTTACCCAAGAGTGA  3990

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3991  CCTCAGAGTTTCACATCCCAGACAATCACACTGTGGTTGAGTGAAATCAAGTGCAGTTTTATTTAAGAACTGGA  4064

Query  250  --------------------------------------------------------------  249
                                                                          
Sbjct 4065  AAGAATAATCAGTATCTGTGAAAGAAAATCCAATTTAGAATATTTAAATAAACATTTATGTA  4126

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.