Nucleotide Global Alignment

Description

Query:
TRCN0000472513
Subject:
XM_006715045.3
Aligned Length:
3237
Identities:
358
Gaps:
2847

Alignment

Query    1  ATGGCCCCCCGCAAGAGGAGCCACCATGGCCTGGGCTTCCTGTGCTGCTTCGGGGGCAGTGACATCCCCGAAAT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCCCCCGCAAGAGGAGCCACCATGGCCTGGGCTTCCTGTGCTGCTTCGGGGGCAGTGACATCCCCGAAAT  74

Query   75  CAACCTCCGGGACAACCACCCTCTGCAGTTCATGGAGTTCTCCAGCCCCATCTCGAACGCAGAGGAGCTCAACA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct   75  CAACCTCCGGGACAACCACCCTCTGCAGTTCATGGAGTTCTCCAGCCCCATCCCGAACGCAGAGGAGCTCAACA  148

Query  149  TCCGCTTTGCAGAGCTGGTGGATGAATTGGATCTCACTGACAAAAACCGAGAGGCTATGTTTGCACTGCCCCCT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCCGCTTTGCAGAGCTGGTGGATGAATTGGATCTCACTGACAAAAACCGAGAGGCTATGTTTGCACTGCCCCCT  222

Query  223  GAGAAGAAATGGCAGATCTACTGCAGCAAGAAGAAGGTGC-------CCTC-----TCTG--ACCCCTCTGGCC  282
            |||||||||||||||||||||||||||||||||||||.||       ||.|     .|||  |.||..||||||
Sbjct  223  GAGAAGAAATGGCAGATCTACTGCAGCAAGAAGAAGGAGCAGGAGGACCCCAACAAGCTGGCAACCAGCTGGCC  296

Query  283  --------ACATC-------TCAGGGTT-CATGGCATGGGGTG------------GCTCTTGCT----------  318
                    |||||       |||  .|| |||||| ||.|.||            ||..|||.|          
Sbjct  297  TGACTATTACATCGACCGCATCA--ATTCCATGGC-TGCGATGCAGAGTCTGTACGCGTTTGATGAGGAGGAGA  367

Query  319  -----------------GCCTTGG----CCTG---------CTCATG-CATTCACC---TGATGTTTAT-----  353
                             |.|.|||    ||||         |||..| ||  ||.|   |||.||||.|     
Sbjct  368  CGGAGATGAGGAACCAAGTCGTGGAAGACCTGAAGACAGCCCTCCGGACA--CAGCCTATGAGGTTTGTGACCC  439

Query  354  --TACAT-----------GCCAGCCCTG--TTCTAGGTGTT-----GGAGGA---------ACAACAGTGAA--  396
              |.|||           ||..|.||||  |.|||..| ||     ||||.|         .||.|.||||.  
Sbjct  440  GCTTCATTGAGCTGGAGGGCTTGACCTGTCTGCTAAAT-TTCCTCCGGAGCATGGACCACGCCACCTGTGAGAG  512

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  513  CCGCATCCACACCTCACTCATTGGCTGCATCAAAGCATTGATGAACAACTCCCAGGGGCGGGCACATGTGCTGG  586

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  587  CACAGCCTGAGGCCATTAGTACCATAGCCCAGAGCCTACGCACAGAGAACAGCAAGACCAAGGTGGCTGTGCTG  660

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  661  GAGATCCTGGGTGCTGTGTGCCTCGTGCCTGGTGGCCACAAGAAGGTGCTGCAGGCCATGCTGCACTACCAGGT  734

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  735  GTATGCAGCAGAGCGAACCCGCTTCCAGACCCTGCTGAACGAGCTAGACCGAAGTCTGGGCCGGTACCGGGATG  808

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  809  AAGTGAATCTGAAAACAGCCATCATGTCCTTCATCAATGCTGTCCTCAATGCTGGAGCTGGAGAGGATAATCTG  882

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  883  GAGTTCCGCCTACATCTACGGTATGAATTCCTGATGCTGGGTATACAGCCTGTGATTGACAAGCTCCGGCAACA  956

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct  957  TGAAAATGCCATCCTGGACAAACATTTAGACTTCTTCGAGATGGTGCGGAATGAGGATGACCTGGAGCTAGCCA  1030

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1031  GGAGGTTTGACATGGTCCACATCGACACCAAGAGTGCTTCCCAGATGTTTGAGTTGATCCACAAGAAGCTGAAG  1104

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1105  TACACGGAGGCCTACCCCTGCCTGCTCTCTGTGCTGCACCACTGCCTGCAGATGCCCTACAAACGGAACGGTGG  1178

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1179  CTACTTCCAGCAGTGGCAGCTCCTGGACCGCATCCTCCAGCAGATTGTCCTCCAGGATGAGCGGGGTGTGGACC  1252

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1253  CTGACCTGGCTCCCTTGGAGAACTTCAATGTCAAGAACATCGTCAACATGCTCATCAACGAGAATGAAGTGAAA  1326

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1327  CAGTGGCGAGACCAGGCAGAGAAGTTCCGGAAAGAACACATGGAGCTTGTGAGCCGTCTGGAGAGGAAGGAGCG  1400

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1401  GGAATGCGAGACAAAGACATTGGAGAAGGAAGAGATGATGCGGACGCTGAACAAAATGAAGGACAAGCTGGCCC  1474

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1475  GGGAGTCCCAGGAGCTGCGCCAGGCTCGGGGACAAGTGGCAGAGCTGGTAGCCCAGCTCAGTGAACTCTCAACA  1548

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1549  GGCCCTGTATCTTCCCCACCACCCCCTGGGGGCCCACTCACCTTGTCTTCCTCAATGACAACCAATGACCTGCC  1622

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1623  TCCACCCCCTCCTCCTCTGCCCTTTGCCTGTTGTCCCCCTCCCCCACCACCACCCCTTCCTCCCGGGGGACCCC  1696

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1697  CGACTCCCCCAGGTGCCCCACCTTGCCTCGGCATGGGCCTGCCCCTCCCTCAGGACCCCTACCCCAGCAGTGAC  1770

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1771  GTCCCACTCAGGAAAAAGCGTGTCCCCCAGCCTTCTCACCCACTGAAGTCCTTCAACTGGGTGAAGCTGAATGA  1844

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1845  GGAGCGTGTCCCTGGCACCGTATGGAATGAGATTGATGACATGCAGGTATTTCGGATCCTGGACCTAGAGGATT  1918

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1919  TTGAAAAGATGTTTTCAGCCTACCAGAGGCACCAGGAGCTGATAACTAATCCTTCTCAGCAGAAAGAGCTGGGC  1992

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 1993  TCCACTGAAGACATCTACCTGGCTTCCCGCAAGGTCAAAGAGCTGTCGGTCATTGATGGCCGGAGGGCCCAAAA  2066

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2067  CTGCATCATCCTTCTTTCCAAGTTGAAGCTTTCTAACGAGGAGATCCGGCAGGCCATCTTGAAGATGGATGAGC  2140

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2141  AGGAGGACCTTGCTAAGGACATGCTGGAGCAGCTCCTCAAGTTCATCCCAGAGAAGAGTGACATTGACCTCCTG  2214

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2215  GAGGAGCACAAGCATGAAATTGAGCGGATGGCCCGTGCTGACCGCTTCCTCTATGAAATGAGCAGGATTGACCA  2288

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2289  CTACCAGCAGCGACTGCAAGCCCTCTTCTTCAAGAAGAAATTCCAGGAGCGGCTGGCTGAGGCAAAGCCCAAAG  2362

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2363  TGGAAGCCATCCTGTTGGCCTCCCGGGAGCTGGTCCGCAGCAAGCGTCTTAGACAGATGCTAGAGGTCATCCTA  2436

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2437  GCCATAGGCAACTTCATGAACAAAGGGCAGCGTGGGGGCGCCTACGGGTTCCGGGTGGCCAGCCTCAACAAGAT  2510

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2511  CGCTGACACCAAGTCCAGCATCGACAGAAACATCTCTCTGCTCCATTACCTGATCATGATCCTGGAGAAGCATT  2584

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2585  TTCCTGATATTCTAAACATGCCTTCAGAGCTGCAACATCTTCCAGAAGCTGCCAAAGTCAACCTAGCAGAACTG  2658

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2659  GAGAAGGAGGTGGGCAACCTCAGGAGGGGCCTGAGAGCGGTGGAGGTGGAGCTGGAGTATCAGAGGCGCCAGGT  2732

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2733  ACGGGAGCCCAGTGACAAGTTTGTCCCTGTCATGAGCGACTTCATCACGGTGTCCAGCTTCAGCTTCTCCGAGC  2806

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2807  TGGAGGACCAGCTAAATGAGGCCAGGGACAAGTTCGCCAAGGCCTTGATGCACTTCGGGGAGCATGACAGCAAG  2880

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2881  ATGCAGCCAGACGAATTCTTTGGCATCTTTGATACCTTCTTGCAGGCCTTCTCAGAGGCCCGGCAGGATCTAGA  2954

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 2955  GGCCATGAGGAGGAGGAAGGAGGAGGAGGAGCGGCGGGCGCGCATGGAAGCCATGCTGAAGGAGCAGAGGGAAC  3028

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 3029  GTGAGCGGTGGCAGCGGCAGCGGAAGGTCCTGGCTGCAGGCAGCTCGCTGGAGGAGGGAGGAGAGTTCGATGAC  3102

Query  397  --------------------------------------------------------------------------  396
                                                                                      
Sbjct 3103  CTGGTGTCGGCCCTGCGCTCTGGGGAGGTCTTCGACAAGGACTTATGCAAGCTCAAGCGCAGCCGCAAGCGATC  3176

Query  397  -------------------------------------------------------  396
                                                                   
Sbjct 3177  AGGGAGCCAGGCCCTGGAAGTTACCCGGGAGCGGGCAATAAACCGGCTAAATTAT  3231

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.