Nucleotide Global Alignment

Description

• Query: TRCN0000472584
• Subject: XM_006501967.3
• Aligned Length: 2890
• Identities: 1823
• Gaps: 785

Alignment

Query    1  ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTT  148
                                                                           || |||||  |
Sbjct    1  ---------------------------------------------------------------AT-GAGAC--T  8

Query  149  TACGA-ATTCCACTC-AAGTGCCCTAATTGCA-GAAGTATTACTGAAAT-TGCTCCAACTGGCATTGAATCTTT  218
            .|.|| ||..|.||| |||...||.||  ||| .|||.||||.|||..| ||       |||            
Sbjct    9  GAAGATATCTCTCTCAAAGGAACCAAA--GCATCAAGAATTAGTGAGCTGTG-------TGG------------  61

Query  219  ACCTGTTAATTTTGCACTAAGG-------GCTATTATTGAAAAGTAC-CA-GCA-AGAAGACCATCCAGAT---  279
                      .|||.||||.||       |||           |||| || ||| .||.||||| ||||||   
Sbjct   62  ----------GTTGGACTACGGCGGAGGAGCT-----------GTACTCATGCAGTGACGACCA-CCAGATCGT  113

Query  280  --ATTGTCACCTGCCCTGAACATTACAG-GCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTG  350
              |.||..||||||   .|||    ||| |.|||||             |.|||.||                 
Sbjct  114  CAAGTGGAACCTGC---TAAC----CAGTGAAACCA-------------GCCTAATA-----------------  150

Query  351  TGGTCA--TTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAAGA  422
              ||||  .|||||        |...|||||     .|.||.|||   |||||||                   
Sbjct  151  --GTCAAGCTGCCT--------GATGACATC-----TACCCGATA---GACCTTC-------------------  187

Query  423  AAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTATTGAAA  496
                              ||||.||                     |..|.|||..|||..|||          
Sbjct  188  ------------------ACTGGTT---------------------TCCAAAGAGTTTAGGCAT----------  212

Query  497  AGCCGAAAG-AACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAAGGAAGCT--GTTCTC-CAGTATTT  566
                 |||| ||||.|                      |..||||    ||.|||||  ||.||| ||      
Sbjct  213  -----AAAGAAACAGA----------------------CGCAGGC----AGAAAGCTTCGTCCTCACA------  249

Query  567  TAAGGAGCT-TAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTTGGCAATCTA  639
                 |||| |.|||.|                    |||||||                         ||||.
Sbjct  250  -----AGCTCTGATGGT--------------------AAGTTTC-------------------------ATCTG  273

Query  640  ATTAATCAAGAATATACTCCACAAATT-GAAAGAATGAAGGAAATACGAGAGCAGCAGCTTGAATTAATGGCAC  712
            |||  ||              |||.|| |.||||.|   ||||  |.|||.|.||.||||           |||
Sbjct  274  ATT--TC--------------CAAGTTAGGAAGAGT---GGAA--AAGAGTGTAGAAGCT-----------CAC  315

Query  713  TGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGATGTACGC-CAGCATGTACA  785
            ||                                               ||..|.|||.|.| |||.|      
Sbjct  316  TG-----------------------------------------------TGGGGCTGTGCTCGCAGGA------  336

Query  786  GATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG-----TAAGCAAAATATT  854
                                                ||.||.|| ||||    |||     |  ||  |.||.|
Sbjct  337  ------------------------------------CGATGGAA-TTAT----GAGGGGACT--GC--ATTAGT  365

Query  855  GAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATGAAAATTTCTCCAA  928
            ||.||    .|||||.|||        |||||                        ||.|||||||.|...|||
Sbjct  366  GACAG----TTGGAGAAGA--------TGGAC------------------------AAGTGAAAATCTGGTCAA  403

Query  929  A---AAGGATG------TCATGTT---CCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCA  990
            |   |.|||||      |||..||   ||..||..||||||||||||||.||||||||.|||||||||||||||
Sbjct  404  AGACAGGGATGCTCAGATCAACTTTAGCCCAGCAAGGAACACCAGTGTACTCAGTAGCCTGGGGCCCTGATTCA  477

Query  991  GAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTG  1064
            ||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct  478  GAAAAGGTTCTTTATACAGCAGGCAAACAGCTCATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTG  551

Query 1065  GAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAG  1138
            ||||||.|||||||||||.|||||||||||.||.||||||||.||.|||||.||||||||||||||.|||||||
Sbjct  552  GAAAGCCCATGATGGCATCATTTTAAAAGTCGACTGGAACTCAGTGAATGACCTTATTTTATCTGCGGGTGAAG  625

Query 1139  ACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACT  1212
            |||||||.||||||||.|||||||||||.||||||...||||||...||.||.|||||||||||.|||||.||.
Sbjct  626  ACTGTAAGTATAAGGTTTGGGATAGTTATGGCCGCGTGCTGTACGGCTCCCAGCCTCATGAGCACCCCATCACC  699

Query 1213  TCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAAC  1286
            |||||.|||||||||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct  700  TCAGTGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTTGGATCGTTTCATACGTTACGCTTGTGTGATAAAAC  773

Query 1287  TGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTC  1360
            |||                                                                       
Sbjct  774  TGG-----------------------------------------------------------------------  776

Query 1361  AGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAAT  1434
                                                                                      
Sbjct  777  --------------------------------------------------------------------------  776

Query 1435  TTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGA  1508
                                               ||||||.||.|||||.||||||||.||||||.|.|||||
Sbjct  777  -----------------------------------GGTTCGCAACGTTCTCAATGATGCCGTGGATCTCCTGGA  815

Query 1509  ATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACG  1582
            .|||||.||.|||||||||||||||||.||.|||.|.||||||||.||.||.||.|||||.||.||.||.||||
Sbjct  816  GTTCCGGGACAGAGTCATTAAAGCATCCTTAAACCACGCACACTTGGTGGTCTCCACGTCCCTGCAGTGCTACG  889

Query 1583  TGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAG  1656
            |||||||.||||||||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  890  TGTTCTCTACGAAGAACTGGAATACACCACTTATATTTGATCTCAAAGAAGGAACTGTTAGTTTAATTCTGCAG  963

Query 1657  GCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATC  1730
            ||||||||||||||||||||.||.|||||..|..|||||||..|..|.||.||||||||||||||.|||||.||
Sbjct  964  GCAGAAAGACATTTTCTTCTGGTGGATGGCGGGGGTATCTACCTGCACTCTTATGAAGGGCGCTTCATTTCTTC  1037

Query 1731  TCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAA  1804
            ||||||.||||||||.|||||||||||.||.|||||.||.||||||||||||.||||.|||||.||.|||||||
Sbjct 1038  TCCAAAGTTTCCTGGCATGAGAACAGACATCCTGAACGCTCAGACTGTGTCTCTGAGCAATGACACGATAGCAA  1111

Query 1805  TAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAG  1878
            |||..|||||||||||.||.||.||||||||||||||||||||.|||||.|||||.||..||||.|||||.||.
Sbjct 1112  TAAAGGACAAAGCTGACGAGAAGATAATCTTCCTCTTTGAGGCGTCAACTGGAAAACCCCTAGGGGATGGGAAA  1185

Query 1879  TTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGC  1952
            .||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1186  CTTCTTTCTCATAAGAATGAAATCTCAGAAATTGCTCTGGATCAAAAAGGACTTACCAATGACAGAAAAATTGC  1259

Query 1953  TTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGC  2026
            |||||||||.||.||.||||||||||..|||||.||||||||||||||||||||.||||||||.|||||.||.|
Sbjct 1260  TTTCATTGACAAGAACAGAGATCTCTACATCACCTCTGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAAC  1333

Query 2027  TTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTT  2100
            |||||||.|||||.|||||||||||||||...|||||||||||||||||.||||||.||||||||||||||||.
Sbjct 1334  TTGGAACCATGGTACATACTTTGGCATGGTGTGATACATGCAATATCCTCTGTGGAATTCAAGATACTCGATTC  1407

Query 2101  ATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGC  2174
            |.|||.|||||||||||.|||||..||||||||||||||||||||.|||||||||||||.||.|||||.|||||
Sbjct 1408  ACAGTATGGTATTACCCTAATACCATTTATGTGGACAGAGACATTCTGCCTAAAACATTGTACGAAAGAGATGC  1481

Query 2175  AAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCT  2248
            ||||||||.|||||||||.||.|||||.||||||||||||||||||||.||||||||.||||||||||||||||
Sbjct 1482  AAGTGAATATAGTAAAAACCCGCATATAGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCT  1555

Query 2249  CCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGAT  2322
            |||||||.||||||||||||.||||.||.||.||.||.||||||||.|||||.|||||.||.||.||||||||.
Sbjct 1556  CCCTGGTGCACATCAGCATATCACCGTACCCCGCCATCCTCCATGAGTATGTGAGCAGCTCCAAGTGGGAAGAG  1629

Query 2323  GCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCG  2396
            |||||.||.|||||.|||||||||||||||||||.||||||||||||.|||||.||||||||.|||||||||||
Sbjct 1630  GCTGTAAGGCTTTGCCGCTTTGTTAAGGAGCAAAGCATGTGGGCTTGCCTAGCGGCTATGGCTGTTGCTAATCG  1703

Query 2397  AGATATGACTACTGCAGAAGTAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAA  2470
            |||||||...|||||||||.||||||||||||||.||||.|||||||||||.||||.||||||||||.||||||
Sbjct 1704  AGATATGGTCACTGCAGAAATAGCCTATGCAGCAGTTGGGGAAATTGATAAAGTTCGGTACATCAATGCTATAA  1777

Query 2471  AAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATA  2544
            ||.||||||||||||.|||.||||||||||||||||||||..||||||||||||||||.|||||||||||||.|
Sbjct 1778  AAGATCTTCCATCTAGAGAGTCAAAAATGGCCCACATACTCATGTTTAGTGGGAACATCCAGGAGGCTGAAACA  1851

Query 2545  GTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACT  2618
            ||.||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||||||||||||||.||
Sbjct 1852  GTCCTGCTCCAGGCTGGCCTTGTTTATCAAGCCATACAGATCAACATTAATCTCTATAACTGGGAAAGGGCGCT  1925

Query 2619  GGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTG  2692
            |||.||||||||||||||||||||.||.|||||||||||.||.|||||.|||||.|||||.|||||.|||||||
Sbjct 1926  GGAGTTGGCTGTAAAATACAAAACCCACGTTGATACAGTGCTCGCTTATCGTCAGAAGTTCTTGGACACATTTG  1999

Query 2693  GTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCC  2766
            |||||||||||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||
Sbjct 2000  GTAAACAGGAAACTAATAAACGATATTTACAATATGCAGAGGGCCTCCAAATAGACTGGGAGAAAATCAAAGCC  2073

Query 2767  AAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAA  2840
            ||||||||||||||||||||.||||||.||||.|.||||||.|||.||||.||||||||||||.|.||.|||||
Sbjct 2074  AAAATTGAGATGGAAATTACTAAAGAACGAGACCGATCATCCAGCGGCCAGTCCAGCAAGAGTGTGGGCTTAAA  2147

Query 2841  GCCC  2844
            ||.|
Sbjct 2148  GCAC  2151