Nucleotide Global Alignment
Description
- Query:
- TRCN0000472736
- Subject:
- XR_001741993.2
- Aligned Length:
- 4850
- Identities:
- 1045
- Gaps:
- 3761
Alignment
Query 1 --------------------------------------------------------ATGGCGTATTTCATCGAG 18
||||||||||||.|||||
Sbjct 1 ACACAGCGGCGGGCGGGCGCGGACGCGGAACCCGGCGCGGCGGCGGCACGATGGTCATGGCGTATTTCGTCGAG 74
Query 19 AATTTTTGGGGGGAAAAAAATAGTGGCTTTGATGTCCTCTACCATAATATGAAACATGGACAGATATCGACAAA 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 75 AATTTTTGGGGGGAAAAAAATAGTGGCTTTGATGTCCTCTACCATAATATGAAACATGGACAGATATCAACAAA 148
Query 93 AGAACTAGCAGATTTTGTAAGGGAACGAGCTACCATAGAGGAGGCATACTCCAGGTCAATGACAAAACTAGCAA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGAACTAGCAGATTTTGTAAGGGAACGAGCTACCATAGAGGAGGCATACTCCAGGTCAATGACAAAACTAGCAA 222
Query 167 AATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAGTATGGGATGTATTCAAAACATCTACAGAGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAGTATGGGATGTATTCAAAACATCTACAGAGAAA 296
Query 241 TTAGCAAATTGTCACTTGGATCTTGTTAGAAAATTACAAGAATTAATAAAGGAAGTTCAGAAGTATGGAGAAGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTAGCAAATTGTCACTTGGATCTTGTTAGAAAATTACAAGAATTAATAAAGGAAGTTCAGAAGTATGGAGAAGA 370
Query 315 ACAAGTAAAGTCTCATAAAAAGACTAAAGAAGAAGTTGCAGGAACTCTGGAAGCTGTCCAAACCATTCAGAGCA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACAAGTAAAGTCTCATAAAAAGACTAAAGAAGAAGTTGCAGGAACTCTGGAAGCTGTCCAAACCATTCAGAGCA 444
Query 389 TAACTCAGGCCCTCCAGAAATCCAAGGAAAATTACAATGCCAAGTGTGTAGAACAGGAGCGTTTGAAAAAGGAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAACTCAGGCCCTCCAGAAATCCAAGGAAAATTACAATGCCAAGTGTGTAGAACAGGAGCGTTTGAAAAAGGAA 518
Query 463 GGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAATCTAAGAAAGCTACAGATACTTATAAACTCTATGT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 519 GGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAATCTAAGAAAGCTACAGATACCTATAAACTCTATGT 592
Query 537 GGAAAAATATGCATTAGCAAAAGCTGATTTCGAACAGAAAATGACAGAAACAGCTCAGAAATTTCAAGATATTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAAAAATATGCATTAGCAAAAGCTGATTTCGAACAGAAAATGACAGAAACAGCTCAGAAATTTCAAGATATTG 666
Query 611 AAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAATGCTATAAAGGAAATTCATTTGCAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAATGCTATAAAGGAAATTCATTTGCAG 740
Query 685 ATAGGCCAGGTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGTTGAAAGTTTGATACAAAAATTTGC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATAGGCCAGGTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGTTGAAAGTTTGATACAAAAATTTGC 814
Query 759 TGAGTCAAAAGGCACTGGGAAGGAAAGACCTGGCCTCATTGAATTTGAAGAATGTGACACTGCTAGTGCAGTTG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGAGTCAAAAGGCACTGGGAAGGAAAGACCTGGCCTCATTGAATTTGAAGAATGTGACACTGCTAGTGCAGTTG 888
Query 833 AAGGTATAAAACCAAGGAAAAGAAAGACCTTTGCTTTGCCAGGAATCATTAAAAAGGAAAAAGATGCAGAATCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGGTATAAAACCAAGGAAAAGAAAGACCTTTGCTTTGCCAGGAATCATTAAAAAGGAAAAAGATGCAGAATCT 962
Query 907 GT-----------ATGGAGTTTCA----------CTGTTGTTGCCCAGGTTGGAATGCA-ATGGCGCGATCTTG 958
|| |||.||.|||| |||.|||.| |||.| |.|||
Sbjct 963 GTGGAATGTCCTGATGCAGATTCATTGAACATTCCTGATGTAG-----------ATGAAGAAGGC--------- 1016
Query 959 GCTTACTGCATTCTCCACC------------------TCCCAGGTTCAAGCGA-----TTCTCCTC--CTA--- 1004
|||.|.|| |..||| |.||| |||.|| ||||.||| |||
Sbjct 1017 ---TACAGTAT--TAAACCAGAAACAAATCAGAATGATACCA-----AAGAGAACCATTTCTACTCATCTAGTG 1080
Query 1005 CCTCAGCCTCC-----------------CAAGTAGCTGG-----AATTACGGCGCCCA-----CCA------CC 1045
..||.|.|||| .|||||.| || ||||| .|||.| ||| .|
Sbjct 1081 ATTCTGACTCCGAAGATGAAGAACCAAAGAAGTATC-GGATAGAAATTA---AGCCTATGCATCCAAATAACTC 1150
Query 1046 ACATC------TGGCTAATTTTT---TGTATTTTTAGTAGAGACAGGG----------TTTCACC----ATAT- 1095
||||| ||||| |.||| ||.|||...||||...|.|||| |.||.|| ||||
Sbjct 1151 ACATCACACAATGGCT--TCTTTGGATGAATTAAAAGTATCTATAGGGAATATAACACTCTCCCCAGCAATATC 1222
Query 1096 -------TGGCCAG----GCTG-GTCGCGAACTCCTGAC--CTCAGG--------------------------- 1128
.|.|||| |.|| .||| |||.| ||.| .|.|||
Sbjct 1223 TAGACACAGTCCAGTACAGATGAATCG-GAATT--TGTCTAATGAGGAGTTAACAAAATCAAAGCCATCTGCTC 1293
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1294 CACCCAATGAAAAAGGAACCAGTGATTTACTTGCTTGGGACCCCCTATTTGGACCATCTCTTGATTCATCTTCT 1367
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1368 TCATCTTCACTAACTTCATCATCATCAGCCCAGGCCATTCAGCCCACCTGTAACTTCCAACACCAGCCCACCTC 1441
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1442 CTGCTGCACCATTAGCCCGGGCAGAAAGTTCTTCTTCTATCTCATCATCTGCTTCATTGAGTGCTGCCAATACT 1515
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1516 CCAACAGTAGGTGTGTCACGGGGTCCCAGCCCTGTCAGCCTTGGAAATCAGGATACCTTACCTGTGGCAGTTGC 1589
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1590 CCTTACAGAATCTGTTAATGCCTACTTTAAAGGAGCAGATCCCACCAAGTGTATTGTGAAGATCACTGGTGATA 1663
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1664 TGACAATGTCATTTCCAAGTGGAATTATTAAAGTCTTCACCAGCAATCCAACTCCAGCTGTGTTGTGCTTCAGG 1737
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1738 GTGAAAAATATCAGCAGACTAGAGCAGATTCTTCCAAATGCACAGCTTGTGTTCAGTGATCCATCACAATGTGA 1811
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1812 TTCCAACACAAAAGATTTTTGGATGAACATGCAAGCTGTTACAGTCTACCTCAAGAAGCTGTCAGAGCAAAATC 1885
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1886 CAGCTGCTTCTTATTATAATGTAGATGTATTAAAGTATCAGGTATCATCAAATGGTATTCAGTCCACTCCTCTG 1959
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1960 AATCTTGCAACATACTGGAAATGTAGTGCTAGCACCACAGATCTTAGAGTGGATTATAAATACAATCCAGAAGC 2033
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2034 TATGGTGGCACCTAGTGTGCTTTCCAACATACAGGTGGTGGTACCAGTGGATGGAGGAGTAACGAACATGCAGT 2107
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2108 CCCTTCCCCCTGCAATATGGAATGCAGAACAAATGAAAGCCTTTTGGAAATTGTCTAGTATTTCAGAAAAATCA 2181
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2182 GAAAATGGAGGTTCTGGGTCCCTCCGAGCAAAATTTGATCTTTCAGAAGGACCTAGTAAACCCACGACACTTGC 2255
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2256 AGTACAATTCCTCAGCGAGGGAAGTACCCTTTCAGGAGTAGATTTCGAACTTGTGGGCACTGGCTATAGGCTTT 2329
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2330 CCTTAATAAAGAAGCGGTTTGCTACTGGACGATACCTGGCGGATTGTTGATGGACCTGGGAAAGTGATGTGGCT 2403
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2404 TCAGGGATTACAAACCTGCCATTCTGCATTATCTGTTCTTTCCAAACACTATTTTAACTTGTATGATGTCTTTC 2477
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2478 AAACTTAGACATATTTGAGAGCTGACTACAAACATTAAATCGCACTTTTAAAGTGAGTCATTGAAATAAATAGT 2551
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2552 ACTGAAATGATTCTCTATGTTGTAAATGATCAACTACAATATTCAGGAAGCACATTTATTCAGATTCTCAGTAA 2625
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2626 AAATGAAGTTTTTGTAGGATTAATTTTTAAATTATTTCCAGTGTCTATGTTGAAAAAAAGGGTTATAGTGTAAT 2699
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2700 ATCAGGCCTAAAGTTTCAGAAGAGCAAGCACAAAGTAATTTAGCTTTCCATACATTTTTAGAGTCAGAGATAAC 2773
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2774 TTTGAAATTTCATAAGTTTGATATTCAGTGGATACAAATAGAACATGAATTCTAAGTTTTGGGTAATGTTAACT 2847
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2848 CAGAACACTTAATCAAATTGAGCTATGTGCCATAAGGTAATCAGACCAGAGTCCAAGTTGTATGCAAAAAATCT 2921
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2922 ATAATTTGATTCTCATAAACATATTAATAAAGTATAAGTGATGTTTTATATGATTTTTAAAAAAAATTCTCAAG 2995
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2996 TGCAATGTGTTTTAAAATAAGCTTGCAAATGACAGCAGAGACATTTACTTCTGCAGTTAGTTAACTTTATAGGA 3069
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3070 GTTGTGATTTTTTTGATGAATTAATGCTGTAGATTTAATTTATTTTTATATGGAATTGCATAATGTGTGCCTTT 3143
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3144 TAAAACAATAACAAAAACCAGAGATGTGCCTATACAATTTGTGTTCATTAATGTGCCTCACTTTTTTTCTCAGT 3217
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3218 CTGAATCTTCTGTTCAGAATCTTACAGTGATCAAGCATTTTTATAAGATATTTGCAATTTTTGTAAATATTTTT 3291
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3292 GGCCTGCAACTGGGAAGGGGATTCAGAGTCATAAAGCCTAACTTAAGAATCCTGGCTCACTTCTTTGGTGATAC 3365
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3366 ACTGTAGCCACTAGAAAGAGAAATAAACCCAATGGCATGTGTTTACAGGAAGAAAGATTACCTTCAGATACTTG 3439
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3440 ACATTAACCTCATCAAAAGTGTGTGAATTTTAAAACAAATTCTAAAAAAACTATAGTGCTAAATTGGTAACTGG 3513
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3514 TATTTTAACTCTCAATTTAGCATTTTCCTTGATACTTTATCATTGAAAATTTATGCATTTATTTACTGATTGTG 3587
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3588 TTGTGAACATGAGTTTTATGGTATTTTGTGAGGGATGCATTTTTTAAAAGATTAATTTTGGAAACAGAAGGAGA 3661
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3662 AGCACTGCCATTTGTTTTTATTTCAACAATTGGAAAAATTACCAATTTGTACATTTTAATTATTCAATTTCTAC 3735
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3736 TTTGTAAAAATAGGGAAATTATTTGAAGTGATATATTTGGTTAAACATTTCTAAAAATAAACTACCAATACTAA 3809
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3810 ATAGTAAGAAACCTAACTTTAGTAGCAAATCTTGATTAATTGAAGAAATAAAATATTTCGGATAAGGTTTCATA 3883
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3884 ATTTACAAATGGGAATTTCATTTATAATAATAAATATGAGTGTCCTTTATTTGCCTAGTAGAAGTGATAAATTG 3957
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3958 TGTTATATATGATAATTTATATAAAACCACTAATTGTTCCGTTAAGCTTCACAGAAAATAAAACCTCTATTACT 4031
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4032 AGACATTTATGTAACATCTTGCTGTACTAAATACAGCAGAAAATCTACTCTTTAGCAATATATAACACAGTATA 4105
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4106 TGCTTTTTTATATATTCAATGTTAGCCCAAGTCTGAATTTACATTTGACTAAAGCAGCACATAAGATAATTTGC 4179
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4180 TAAAATGCTAATCTTTACTAAATAGTGAGCTAAATTAGAATTTCTAACTCTTATATTGTGCTCTTTTAAATGCC 4253
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4254 AATTACAGTCCCTTACTGGAATTCTAACTGTAATTTGCTTTGCAATCAAACTGCTTTTAGGGCAGCCAATATTT 4327
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4328 TATTATTGGAATTCAGACACTGTTCTTACCGTGTTTGTTTTTAATCAAATATTACCTAAAAATGTACAAATTAG 4401
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4402 TGAAATGGTTAAACTTCTGCACTTTCTTAGTTACCACAGTCTTCATACCAAGTATTGGGTACAGGTTACAATTT 4475
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4476 TGAAGCCATATGAGTTTATATTGATTTTTTTTTTCCATTTAAAAATCCACTAATGGTGTAAAAGAGACCAGTAG 4549
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4550 ATTTTCAATGGGAAATGTACCTAGCAAGCTGGTTCTTGCTTATATATAGTGATAAACTTTGTAGCTGCCTCTTT 4623
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4624 AACCAAGAATTTGTAAACACAACTCTAATAAATGTGAGTTTTAAAGGATTGTTATTTACTACTTTGGATTGTAA 4697
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4698 TTAGAACAATGCACATCTGTCTTCCAAGATTTTGTAAATATTTTTGATTTTTTTCATTAAATGTAAATTTTACA 4771
Query 1129 ---------------------------------------- 1128
Sbjct 4772 TAAAAGTTGTGCTCTTAATAAACATGTAATATATAATTTA 4811
