Nucleotide Global Alignment
Description
- Query:
- TRCN0000473045
- Subject:
- XR_930920.3
- Aligned Length:
- 3371
- Identities:
- 958
- Gaps:
- 2383
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGTGTGAGCAAGAATTTCCTGCGGTTCCTCTAGGAAAATTCCTTTGTGCAGATCAGGCCCGTGGATTGGTGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAATCCTAACCACGTCTTCCCTGGCCTGTCTTCACTCTTCTCCCCAGAATCACCACTTCTGCACTGGTGTCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGTGTATTGAGTGATTTTGTGGAGGGCAGAAGTAGGAAGTCTTTGGGACAAAACTGTATTTACCTTGGGATC 222
Query 1 --------------------------------------------------------ATGGCTTCTGGAATCCTG 18
||||||||||||||||||
Sbjct 223 TGTGAACAAGAGGAACCTCAGCAGCCAGGACAGGCAGGAGCAGTGGAATAGCTACTATGGCTTCTGGAATCCTG 296
Query 19 GTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGACACAACCCCTGAGCCTGGACTGCGG 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTAATGTAAAGGAGGAGGTGACCTGCCCCATCTGCCTGGAACTCCTGACACAACCCCTGAGCCTGGACTGCGG 370
Query 93 CCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGCTAGACAAAGGAGAGAGTAGCTGCC 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCACAGCTTCTGCCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGCTAGACAAAGGAGAGAGTAGCTGCC 444
Query 167 CTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCATGTAGCCAACATAGTGGAGAAGCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGTGTGCCGGATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCATGTAGCCAACATAGTGGAGAAGCTC 518
Query 241 AGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACGCCATGGAGAGAAACTTCTACTCTT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGGGAGGTCAAGTTGAGCCCAGAGGGGCAGAAAGTTGATCATTGTGCACGCCATGGAGAGAAACTTCTACTCTT 592
Query 315 CTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACGTTCC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGTCAGGAGGACGGGAAGGTCATTTGCTGGCTTTGTGAGCGGTCTCAGGAGCACCGTGGTCACCACACGTTCC 666
Query 389 TCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTGGAGATGCTGAGGCAGAAGCAGCAG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCACAGAGGAGGTTGCCCGGGAGTACCAAGTGAAGCTCCAGGCAGCTCTGGAGATGCTGAGGCAGAAGCAGCAG 740
Query 463 GAAGCTGAAGAGTTGGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAAGACTCAAATACAGTATGACAAAAC 536
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GAAGCTGAAGAGTTAGAAGCTGACATCAGAGAAGAGAAAGCTTCCTGGAAGACTCAAATACAGTATGACAAAAC 814
Query 537 CAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGCTGCAAAACCTGG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAACGTCTTGGCAGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGCTGCAAAACCTGG 888
Query 611 AGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACCCAGTCCCTG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACCCAGTCCCTG 962
Query 685 AGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGAGCTGCTTCAGGGTGTGGATGGCGT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAGAGCTCATCTCAGATCTGGAGCATCGGCTGCAGGGGTCAGTGATGGAGCTGCTTC---------------- 1020
Query 759 CATAAAAAGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGGAGAGTGTTTCGAG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 -------AGGACGGAGAACGTGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGGAGAGTGTTTCGAG 1087
Query 833 CTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTCCGACGCTACTGGGGTAAGGAGA-A 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|.|.|.|| |
Sbjct 1088 CTCCTGATCTGAAAGGAATGCTAGAAGTGTTTAGAGAGCTGACAGATGTCCGACGCTACTGGGTTGATGTGACA 1161
Query 906 GT----------CACATTATCATAAGCCACCCTGCGGCTTATCATTATTATTATCTTTATCTTTTAGAATTTTA 969
|| .||||| ||||..|| |.||||| ||| |||..|.|
Sbjct 1162 GTGGCTCCAAACAACATT-TCATGTGC------------TGTCATT-------TCT----------GAAGATAA 1205
Query 970 --------TGTTCTC-------------------TATTAGGCTCATGTTTTAAG---------ATTTATGA--T 1005
||..||| |||..|||.|..|....||| ||||.||| |
Sbjct 1206 GAGACAAGTGAGCTCTCCGAAACCACAGATAATATATGGGGCACGAGGGACAAGATACCAGACATTTGTGAATT 1279
Query 1006 TC----------------TCCT------TCCAAGACACACAT------AAC-TTAC----------------CC 1034
|| |||| ||.|||...||||| ||| |||| ||
Sbjct 1280 TCAATTATTGTACTGGCATCCTGGGCTCTCAAAGTATCACATCAGGGAAACATTACTGGGAGGTAGACGTGTCC 1353
Query 1035 -------CTCCTTA------------------------------------------------------------ 1041
||.|||.
Sbjct 1354 AAGAAAACTGCTTGGATCCTGGGGGTATGTGCTGGCTTCCAACCTGATGCAATGTGTAATATTGAAAAAAATGA 1427
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1428 AAATTATCAACCTAAATACGGCTACTGGGTTATAGGGTTAGAGGAAGGAGTTAAATGTAGTGCTTTCCAGGATA 1501
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1502 GTTCCTTCCATACTCCTTCTGTTCCTTTCATTGTGCCCCTCTCTGTGATTATTTGTCCTGATCGTGTTGGAGTT 1575
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1576 TTCCTAGACTATGAGGCTTGCACTGTCTCATTCTTCAATATCACAAACCATGGATTTCTCATCTATAAGTTTTC 1649
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1650 TCACTGTTCTTTTTCTCAGCCTGTATTTCCATATTTAAATCCTAGAAAATGTGGAGTCCCCATGACTCTGTGCT 1723
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1724 CACCAAGCTCTTGAACCTTCTTACACACTCAGCCCCTTCTGTACAGCACCTCTTGTCCAGGTGCATCTCATACA 1797
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1798 CCTGAACTCATTTGCATCATTTTAACCATCTTTTCCTTGCTGTCTCCCTTCTTTCTATTTGAACGTCCTTCACT 1871
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1872 CATCAGTAAAATGTAATAATTGCCTTGTGCCATATTGTCCCCAATATTTTATTGACATTTGATAGCAATTTTTT 1945
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 1946 TCATCATTTTCCGTACTCCTAAGGAAAACTGACCTATACCTCATAAAATGAGACCGCTATTTAGGTATTACTTC 2019
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2020 TGCCAGATATTTATCACCCAATTGCCTCTGACACTGACTAAGAAGATGAAGAAAAGCTTTTCAACAGCCTTTCT 2093
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2094 ATATCATCGTGTGATAATTGTTCACCAATGAATGAGTCCTTAGCCCTGTGTCAGTTTACCCTCGATGCCCTTAT 2167
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2168 TTGTGAGTTAAAGAGAAAATATCATAAATGGTATACTCTTAAGTATAGAGGTTTTGTATCTAGAGGATCTCAGT 2241
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2242 TCAACTCCTGTCTCTCCATATACCAGCAGTGTAACTGTGAATAACATACTTAAATGGCTGTGCTTATTTCCTTT 2315
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2316 TCTTTTCTTTTTTCTTTTTTTTTTTTTTTGAGATGAAGTTTTGCTCTTGTTCCCCAGGCTGGAGTGCAATGGCA 2389
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2390 CGATCTCGGTTCACTGCAACCTCCACCTCTCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGG 2463
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2464 ATTACAGGTGCCCACCACCACCCCTGGCTAAATTTGTATTTTCAGTAGAGACGGGGTTTCCCCATGTTGGTTAG 2537
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2538 GCTCGTCTAGAACCTCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAG 2611
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2612 CCACGGCGCCCAGCCTGTGCTTATTTTCTTAAAATAATTTTTGTATTAAAAACTTCACATTAAATAAGTGCTAA 2685
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2686 TGTTTTATTGCATAGTAGGGTGACTAGAGTTAACAATAACCTATTGCATATATTTTGAAATAGCTAGAAGAGAG 2759
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2760 GATTTTGAAAGTTCTCAACACAAAGAAATGACACATATTTGAGGTGATGGATATGCTAATTACCCTGGTTCGGT 2833
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2834 TATTACGCAATGTATACATGTATCAAAACATCACACTGTACCACATAAATATGTATATTTATTATTTGTCAATT 2907
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2908 AAAAGCAAAATAAAACAAAAAACCTTCATCTAATACTTTGGATCATTGTGAAAAAATAAATTCCTGAAGTATAA 2981
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 2982 AGCATCTATCTAAGTGTCTTGATCTAATAAGTACTTGTTCTACAAATTATTGAAAAACATAAACTCTGTTAATG 3055
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 3056 TCTCATGGAACAGGTTGTGCCTTCAGGGAAACTAGGATTGGATTTACTAAATTCTCATTTTTTAGATCTCAGAT 3129
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 3130 ACTACTGTCAAAATGACTTCAATTCTGCCTTCTATATATAATACACACATATATTTAGGATTTTATTGTAATTC 3203
Query 1042 -------------------------------------------------------------------------- 1041
Sbjct 3204 TAGTGTTGCTACATATTAGTCTTTATCAAACAAACTGAATTATGTGGGAATCAGTTTATTAATTGTAAAAAATA 3277
Query 1042 ----------------------------------------- 1041
Sbjct 3278 ATTATAATAAAATTAGCTGATGTAGTTTTTTAAAAGTTAAA 3318
