Nucleotide Global Alignment
Description
- Query:
- TRCN0000473453
- Subject:
- NM_001357768.1
- Aligned Length:
- 2206
- Identities:
- 1212
- Gaps:
- 746
Alignment
Query 1 ------------------------------------------ATGTCGGGACGAACGCTCACGGATCGGATCGC 32
|...|.||| |||..|.|.|||||.|.| ||
Sbjct 1 ATGGAGACCCTTGAACAACATCTAAATACCCTAGAAGGAAAGAAACCTGGA--AACAATGAAGGATCTGGT-GC 71
Query 33 -----CGCCGCTCAGTA---------CAGC-------GTTACAGGCTCTGCTGTAGCAAGAGCGGTCTGCAAAG 85
|.||.||.|||| |||| |||||| |||.|| || .|||.||
Sbjct 72 TCCCTCTCCACTAAGTAAGTCTTCTCCAGCCACAACTGTTACA---TCTCCT-----AA-----TTCTACA--- 129
Query 86 CCA-----------CTACTCATGAAGTAATGGGCCCCAAGAAAAAGCACCTGGAC-TATTTG-------ATCC- 139
||| |.||.||| |||| ||...|.||| |||||| ||||
Sbjct 130 CCAGCTAAAACTATCGACACAT-----------CCCC--------GCCAGTTGACATATTTGCAACAGCATCCG 184
Query 140 AGGCTACCAACGAG--ACCAATGTTAA--TAT---------TCCTCAGAT-----GGCCGACACTCTCTTTGAG 195
.||||.|| |.|| |.|..||.||| .|| |||| .||| |.||||| .|||| |.|||
Sbjct 185 CGGCTGCC--CCAGTCAGCTCTGCTAAGCCATCAAGCGATCTCCT-TGATCTTCAGCCCGAC-TTCTC-TGGAG 253
Query 196 C--------GGGCAACA--AACAGTAG---------CTGGGTGGTTGTGTTTAAGGCTTTAGTGACAACACATC 250
| |||||.|| |.|.|||| ||||| ||| |.|||
Sbjct 254 CAGCTGCGGGGGCAGCAGCACCTGTAGTGCCTCCTTCTGGG-GGT----------------GCGAC-------- 302
Query 251 ATCTCATGGTGCATGGAAA-----TGAGAGATTTATTCAATATTTGGCTTCTAGAAATACACTATTCAATCTC- 318
|.|.||| |||.| ||.|||| ..|||| .||||| |.|||| ||| |||
Sbjct 303 --CGCCTGG-----GGAGACCTTTTGGGAGA-GGATTC----CTTGGC---------TGCACT-TTC---CTCT 351
Query 319 -----------AGCA---ATTT--------TTTGGACAAAAG--TGGATCCCATGGT--TA-------TGA--- 356
|||| |||| ||||.||.|.|| | ||||.|..| || |||
Sbjct 352 GTTCCCTGTGAAGCACCGATTTCAGACCCATTTGCACCAGAGCCT---TCCCCTCCTACTACAACCACTGAGCC 422
Query 357 ----------TATG--TCTACCTTCATAAGGC-------GCTAT---------AGTAGATATTTGAATGAAAAG 402
|.|| ||.|||..||.| || |||.| |||.|||.|
Sbjct 423 TGCTTCAGCCTCTGCCTCGACCACCACA--GCTGTGACGGCTGTCACTACGGAAGTGGATCT------------ 482
Query 403 GCTTTTTCTTACAGACAGATGGCCTTT---GATTTTGCCAGGG--------TGAAGAAAGGGGCCGATGGTGTA 465
|||| ..|||| |||||| |.||.| ||.||| ||.||.| .||||.||
Sbjct 483 -CTTT---------GGAGAT-GCCTTTGCAGCTTCT-CCTGGGGAGGCCCCTGCAGCA----TCCGAAGG---- 536
Query 466 ATGAGGACAATGGCTCCCGAAAAGCTGCTAAAGAGTATGCCAATACTACAGGGACAAATTGATGCA-CTGCTTG 538
||||.||| .|.|.|||| || |.||..|.|.|.|.|||| || ||||
Sbjct 537 -----------GGCTACCG--CACCAGCTA---------CC-------CCGGCCCCAGTGGCTGCAGCT-CTTG 580
Query 539 AATTTGATGTGCATCCAAATGAACTAACAAATGGTGTCA-TAAATGCAGCATTTATGCTTCTTTTCAA------ 605
| |||||.| ||| .||||| |.|.||| |||..|.|.|.||
Sbjct 581 A--------TGCATGC--------------------TCAGGAAATG-ACCCTTT-TGCCCCATCTGAAGGTAGC 624
Query 606 --AGATCTTATCAAACTTTTTGCTTGCTACA-ATGA--TGGTGTTATTAACTTACTCGAAAAGTTTTTTGAAAT 674
||| .|||.|| .||| ||| || ||| ||||.|||
Sbjct 625 GCAGA-------------------GGCTGCACCTGAGCTGG--------AC---CTC---------TTTGCAAT 659
Query 675 GAAGAAAGGACAA--TGTAAAGA----TGCTCTAGAAATT-----TACAAACGATTTCTAACTAGAATGACA-- 735
|||| |.| || ||| .||||..|.|.|| ||| |.|||| .|||
Sbjct 660 GAAG------CCACCTG---AGACCAGCGCTCCTGTAGTTACCCCTAC-----------AGCTAG---CACAGC 710
Query 736 ----CGAGTGTCTGAA-------TTTCTCAAG-----------GTTGCAG---AGGCTCCCAGCA-----GTCT 779
|.|||..|.|.| .|||||..| ||.|||| ..|||.|||.|| |.|
Sbjct 711 CCCTCCAGTTCCCGCAACTGCTCCTTCTCCTGCTCCCACGGCTGTGGCAGCCACTGCTGCCACCACCACCGCC- 783
Query 780 TATGGAGACGCTTGAACAGCATCTAAATACATTAGAAGGAAAGAAACCTGGAAACAAATCTGGTGCT------- 846
|.|||| |||.|||....|| |||..|.||..||||.||||
Sbjct 784 ------GCCGCT------GCAGCTACCACCA----------------CTGCCACCACCTCTGCTGCTGCTGCCA 829
Query 847 -------CCCT-CTCCATTAAGTAAGT-CTTCTCCAGCCACAAC--------------TGTTACGTCTCCTAA- 896
|.|| |||| | ||.|||.|| |.|.| ||.|.|..|||||.|
Sbjct 830 CCACCGCCGCTGCTCC----------TCCTGCTCTAG--ATATCTTTGGTGATTTGTTTGATTCTGCTCCTGAA 891
Query 897 --TTCTACACCAGCTAA-----------------------AACT-ATTGACACA------------TCCC---- 928
|.||.||.||.|||| |.|| .|||.|||| ||||
Sbjct 892 GTTGCTGCAGCACCTAAGCCAGACGCGGCTCCTAGCATAGACCTGTTTGGCACAGATGCTTTCTCCTCCCCGCC 965
Query 929 -----------CACCGGT-----TGATTTATTTGCAACTGC---------ATCTGCGGCTGTCCCAGT--CAGC 975
|.||||| .||.||.|.| .||||| |||||.| |.|.||.| ||||
Sbjct 966 ACGAGGGGCCTCTCCGGTGCCTGAGAGTTCTCT--CACTGCTGACCTCTTATCTGTG---GACGCATTTGCAGC 1034
Query 976 -ACTTCTAAACCATCTAGTG-ATCTCCTG----------GACCTC------CAGCCAGACTTTT---------C 1022
.|.|||....||||.|.|| .||||||| |.|||| || .||||.||| |
Sbjct 1035 GCCGTCTCCTGCATCCACTGCCTCTCCTGCAAAGGCGGAGTCCTCGGGTGTCA--TAGACCTTTTTGGGGATGC 1106
Query 1023 CTCTGGA---GGGGCAGCAGCAGCCGCAGCACCAGCACCAC------------------CACCACCTGCTGGAG 1075
.|.|||| ||.||..|.|.|.|| ||| |||||||||| ||.||.| ||..
Sbjct 1107 GTTTGGAAGTGGTGCTTCTGAAACC-CAG--CCAGCACCACAGGCTGTTTCTAGTTCATCAGCATC----GGCA 1173
Query 1076 GAGCCACT-GCATGGGGAGGATTTGGGGGTTCTTTCATGGCGCCTTCCCCATCTCCAGTGACTCCAGCTCAGAA 1148
||.|.||| || .|||||||||||||||||||||||.|||||..||.|.||||||||||||||||||||
Sbjct 1174 GATCTACTAGC------TGGATTTGGGGGTTCTTTCATGGCCCCTTCTACAACGCCAGTGACTCCAGCTCAGAA 1241
Query 1149 TAACCTGCTACAGCCCAATTTTGAGGCAGCTTTTGGGACAACGCCTTCAACTTCCAGCAGCAGCTCCTTTGATC 1222
|||||||||.||.||||.|||.||||||||||||||.||.||||||||.|||||.|||||||||||.|||||.|
Sbjct 1242 TAACCTGCTGCAACCCAGTTTCGAGGCAGCTTTTGGAACGACGCCTTCGACTTCAAGCAGCAGCTCTTTTGACC 1315
Query 1223 CATCAGTGTTTGATGGTCTAGGTGATCTTTTGATGCCAACCATGGCACCAGCTGGGCAGCCTGCACCTGTCTCA 1296
|||||||||||||||||.||||.||||||.||||||||||||||||||||.|.|||||||||||.|||||||||
Sbjct 1316 CATCAGTGTTTGATGGTTTAGGCGATCTTCTGATGCCAACCATGGCACCATCCGGGCAGCCTGCCCCTGTCTCA 1389
Query 1297 ATGGTACCACCCAGTCCTGCAATGGCAGCCAGCAAAGCCCTTGGAAGTGATCTTGATTCATCTCTTGCCAGCTT 1370
|||||.|||||||||||||||||||||||||||||||.|||.||||||||.|||||.||.|||||.|||||.||
Sbjct 1390 ATGGTCCCACCCAGTCCTGCAATGGCAGCCAGCAAAGGCCTCGGAAGTGACCTTGACTCGTCTCTGGCCAGTTT 1463
Query 1371 AGTAGGCAATCTTGGAATTTCTGGTACCACAACAAAAAAGGGAGATCTTCAGTGGAATGCTGGAGAGAAAAAGT 1444
|||||||||||||||.|||||||||||||||.||||||||||||||||.||||||||||||||.|||||||||.
Sbjct 1464 AGTAGGCAATCTTGGGATTTCTGGTACCACATCAAAAAAGGGAGATCTCCAGTGGAATGCTGGGGAGAAAAAGC 1537
Query 1445 TGACTGGTGGAGCCAACTGGCAGCCTAAAGTAGCTCCAGCAACCTGGTCAGCAGGCGTTCCACCAAGTGCACCT 1518
||||||||||||||||||||||.||.|||||..|||||||.||.||||||||.||.|||||.||
Sbjct 1538 TGACTGGTGGAGCCAACTGGCAACCGAAAGTCACTCCAGCCACATGGTCAGCGGGTGTTCCCCC---------- 1601
Query 1519 TTGCAAGGAGCTGTACCTCCAACCAGTTCAGTTCCTCCTGTTGCCGGGGCCCCATCGGTTGGACAACCTGGAGC 1592
||||||..||||.||.||||||||.|||||.|||||.|.||||||||||||.||.|||||.|||||||||||
Sbjct 1602 --GCAAGGCACTGTTCCACCAACCAGCTCAGTCCCTCCGGGTGCCGGGGCCCCGTCCGTTGGGCAACCTGGAGC 1673
Query 1593 AGGATTTGGAATGCCTCCTGCTGGGACAGGCATGCCCATGATGCCTCAGCAGCCGGTCATGTTTGCACAGCCCA 1666
|||||||||||||||||||.|.||||||||||||.||||||||.||||||||||.|||||||||||||||||||
Sbjct 1674 AGGATTTGGAATGCCTCCTTCAGGGACAGGCATGACCATGATGTCTCAGCAGCCAGTCATGTTTGCACAGCCCA 1747
Query 1667 TGATGAGGCCCCCCTTTGGAGCTGCCGCTGTACCTGGCACGCAGCTTTCTCCAAGCCCTACACCTGCCAGTCAG 1740
||||||||||.||||||||||||||.|||||.||.|||||.||||||||||||||||||||||||||||.||||
Sbjct 1748 TGATGAGGCCACCCTTTGGAGCTGCAGCTGTGCCCGGCACACAGCTTTCTCCAAGCCCTACACCTGCCACTCAG 1821
Query 1741 AGTCCCAAGAAACCTCCAGCAAAGGACCCATTAGCGGATCTTAAC--------------- 1785
||||||||||||||||||||.||||||||.|||||||||||||||
Sbjct 1822 AGTCCCAAGAAACCTCCAGCCAAGGACCCGTTAGCGGATCTTAACATCAAGGATTTCTTG 1881
