Nucleotide Global Alignment

Description

• Query: TRCN0000473453
• Subject: XM_006510896.4
• Aligned Length: 2703
• Identities: 1602
• Gaps: 933

Alignment

Query    1  ATGTCGGGACGAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTTACAGGCTCTGCTGTAGCAAGAGC  74
            ||||||||.|.|||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||
Sbjct    1  ATGTCGGGCCAAACGCTCACGGATCGGATCGCCGCCGCTCAGTACAGCGTGACTGGCTCTGCTGTAGCAAGAGC  74

Query   75  GGTCTGCAAAGCCACTACTCATGAAGTAATGGGCCCCAAGAAAAAGCACCTGGACTATTTGATCCAGGCTACCA  148
            .||||||||||||||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct   75  AGTCTGCAAAGCCACCACTCATGAGGTGATGGGCCCCAAGAAGAAGCACCTGGACTATTTGATCCAGGCTACCA  148

Query  149  ACGAGACCAATGTTAATATTCCTCAGATGGCCGACACTCTCTTTGAGCGGGCAACAAACAGTAGCTGGGTGGTT  222
            |.|||||||||||.|||||.|||||||||||||||||.||||||||||||||.||||||||||||||||||||.
Sbjct  149  ATGAGACCAATGTCAATATCCCTCAGATGGCCGACACCCTCTTTGAGCGGGCGACAAACAGTAGCTGGGTGGTG  222

Query  223  GTGTTTAAGGCTTTAGTGACAACACATCATCTCATGGTGCATGGAAATGAGAGATTTATTCAATATTTGGCTTC  296
            ||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  223  GTATTTAAAGCTTTAGTGACCACACACCATCTCATGGTGCATGGAAATGAGAGATTTATTCAGTATTTGGCCTC  296

Query  297  TAGAAATACACTATTCAATCTCAGCAATTTTTTGGACAAAAGTGGATCCCATGGTTATGATATGTCTACCTTCA  370
            |||.|||||.|||||||||||||||||.|||.|.||.||||||||||||||.|||||||||||||||||.||||
Sbjct  297  TAGGAATACGCTATTCAATCTCAGCAACTTTCTAGATAAAAGTGGATCCCACGGTTATGATATGTCTACGTTCA  370

Query  371  TAAGGCGCTATAGTAGATATTTGAATGAAAAGGCTTTTTCTTACAGACAGATGGCCTTTGATTTTGCCAGGGTG  444
            ||.||||.||.||||||||.|||||||||||||||||.||.||||||||||||||.|||||.||||||||.|||
Sbjct  371  TACGGCGTTACAGTAGATACTTGAATGAAAAGGCTTTCTCCTACAGACAGATGGCATTTGACTTTGCCAGAGTG  444

Query  445  AAGAAAGGGGCCGATGGTGTAATGAGGACAATGGCTCCCGAAAAGCTGCTAAAGAGTATGCCAATACTACAGGG  518
            |||||||||||.||.|||||.||||||||.||||.|||.||||||||.||.||||||||||||||.||.|||||
Sbjct  445  AAGAAAGGGGCTGACGGTGTCATGAGGACGATGGTTCCTGAAAAGCTCCTGAAGAGTATGCCAATCCTGCAGGG  518

Query  519  ACAAATTGATGCACTGCTTGAATTTGATGTGCATCCAAATGAACTAACAAATGGTGTCATAAATGCAGCATTTA  592
            .||.||.|||||||||||.||.||||||||||||||||||||||||||.|||||||||||||||||.|||||||
Sbjct  519  GCAGATCGATGCACTGCTGGAGTTTGATGTGCATCCAAATGAACTAACCAATGGTGTCATAAATGCTGCATTTA  592

Query  593  TGCTTCTTTTCAAAGATCTTATCAAACTTTTTGCTTGCTACAATGATGGTGTTATTAACTTACTCGAAAAGTTT  666
            ||||||||||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||.|||||.|||
Sbjct  593  TGCTTCTTTTCAAAGATCTTATCAAACTGTTTGCTTGCTACAATGACGGCGTCATTAACTTACTTGAAAAATTT  666

Query  667  TTTGAAATGAAGAAAGGACAATGTAAAGATGCTCTAGAAATTTACAAACGATTTCTAACTAGAATGACACGAGT  740
            ||.||.|||||||||||.|||||.|||||.||.||||||||||||||.||||||||||||||||||||..|.||
Sbjct  667  TTCGAGATGAAGAAAGGTCAATGCAAAGACGCGCTAGAAATTTACAAGCGATTTCTAACTAGAATGACGAGGGT  740

Query  741  GTCTGAATTTCTCAAGGTTG------------------------------------------CAGAGGCTCCCA  772
            |||||||||.||||||||.|                                          ||.|||||||||
Sbjct  741  GTCTGAATTCCTCAAGGTCGCCGAGCAAGTTGGTATTGATAAAGGTGACATTCCCGACCTCACACAGGCTCCCA  814

Query  773  GCAGTCTTATGGAGACGCTTGAACAGCATCTAAATACATTAGAAGGAAAGAAACCTGGAAACAA------ATCT  840
            ||||||||||||||||.||||||||.|||||||||||..|||||||||||||||||||||||||      ||||
Sbjct  815  GCAGTCTTATGGAGACCCTTGAACAACATCTAAATACCCTAGAAGGAAAGAAACCTGGAAACAATGAAGGATCT  888

Query  841  GGTGCTCCCTCTCCATTAAGTAAGTCTTCTCCAGCCACAACTGTTACGTCTCCTAATTCTACACCAGCTAAAAC  914
            |||||||||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  889  GGTGCTCCCTCTCCACTAAGTAAGTCTTCTCCAGCCACAACTGTTACATCTCCTAATTCTACACCAGCTAAAAC  962

Query  915  TATTGACACATCCCCACCGGTTGATTTATTTGCAACTGCATCTGCGGCTGTCCCAGTCAGCACTTCTAAACCAT  988
            |||.|||||||||||.||.|||||..||||||||||.|||||.|||||||.||||||||||.||.||||.||||
Sbjct  963  TATCGACACATCCCCGCCAGTTGACATATTTGCAACAGCATCCGCGGCTGCCCCAGTCAGCTCTGCTAAGCCAT  1036

Query  989  CTAGTGATCTCCTGGACCTCCAGCCAGACTTTTCCTCTGGA---------GGGGCAGCAGCA------------  1041
            |.||.||||||||.||.||.|||||.|||||   |||||||         ||||||||||||            
Sbjct 1037  CAAGCGATCTCCTTGATCTTCAGCCCGACTT---CTCTGGAGCAGCTGCGGGGGCAGCAGCACCTGTAGTGCCT  1107

Query 1042  ------------------------------------GCCGCA--------------------------------  1047
                                                ||.|||                                
Sbjct 1108  CCTTCTGGGGGTGCGACCGCCTGGGGAGATTCCTTGGCTGCACTTTCCTCTGTTCCCTGTGAAGCACCGATTTC  1181

Query 1048  ----------GCACCAG----------------------------------------------------CACCA  1059
                      |||||||                                                    |||||
Sbjct 1182  AGACCCATTTGCACCAGAGCCTTCCCCTCCTACTACAACCACTGAGCCTGCTTCAGCCTCTGCCTCGACCACCA  1255

Query 1060  C-------------------------------------------------------------------------  1060
            |                                                                         
Sbjct 1256  CAGCTGTGACGGCTGTCACTACGGAAGTGGATCTCTTTGGAGATGCCTTTGCAGCTTCTCCTGGGGAGGCCCCT  1329

Query 1061  ----------------------CACCACCT--------------------------------------------  1068
                                  |||||.||                                            
Sbjct 1330  GCAGCATCCGAAGGGGCTACCGCACCAGCTACCCCGGCCCCAGTGGCTGCAGCTCTTGATGCATGCTCAGGAAA  1403

Query 1069  ---------------------------------------------GCTGGA-----------------------  1074
                                                         ||||||                       
Sbjct 1404  TGACCCTTTTGCCCCATCTGAAGGTAGCGCAGAGGCTGCACCTGAGCTGGACCTCTTTGCAATGAAGCCACCTG  1477

Query 1075  --------------------------------------------------------------------------  1074
                                                                                      
Sbjct 1478  AGACCAGCGCTCCTGTAGTTACCCCTACAGCTAGCACAGCCCCTCCAGTTCCCGCAACTGCTCCTTCTCCTGCT  1551

Query 1075  ------------GGAGCCACTGC---------------------------------------------------  1085
                        |.|||||||||                                                   
Sbjct 1552  CCCACGGCTGTGGCAGCCACTGCTGCCACCACCACCGCCGCCGCTGCAGCTACCACCACTGCCACCACCTCTGC  1625

Query 1086  --------------------------------------------------------------------------  1085
                                                                                      
Sbjct 1626  TGCTGCTGCCACCACCGCCGCTGCTCCTCCTGCTCTAGATATCTTTGGTGATTTGTTTGATTCTGCTCCTGAAG  1699

Query 1086  --------------------------------------------------------------------------  1085
                                                                                      
Sbjct 1700  TTGCTGCAGCACCTAAGCCAGACGCGGCTCCTAGCATAGACCTGTTTGGCACAGATGCTTTCTCCTCCCCGCCA  1773

Query 1086  --------------------------------------------------------------------------  1085
                                                                                      
Sbjct 1774  CGAGGGGCCTCTCCGGTGCCTGAGAGTTCTCTCACTGCTGACCTCTTATCTGTGGACGCATTTGCAGCGCCGTC  1847

Query 1086  --------------------------------------------------------ATGGGGA-----------  1092
                                                                    .||||||           
Sbjct 1848  TCCTGCATCCACTGCCTCTCCTGCAAAGGCGGAGTCCTCGGGTGTCATAGACCTTTTTGGGGATGCGTTTGGAA  1921

Query 1093  -----------------------------------------------------------------------GGA  1095
                                                                                   |||
Sbjct 1922  GTGGTGCTTCTGAAACCCAGCCAGCACCACAGGCTGTTTCTAGTTCATCAGCATCGGCAGATCTACTAGCTGGA  1995

Query 1096  TTTGGGGGTTCTTTCATGGCGCCTTCCCCATCTCCAGTGACTCCAGCTCAGAATAACCTGCTACAGCCCAATTT  1169
            ||||||||||||||||||||.|||||..||.|.|||||||||||||||||||||||||||||.||.||||.|||
Sbjct 1996  TTTGGGGGTTCTTTCATGGCCCCTTCTACAACGCCAGTGACTCCAGCTCAGAATAACCTGCTGCAACCCAGTTT  2069

Query 1170  TGAGGCAGCTTTTGGGACAACGCCTTCAACTTCCAGCAGCAGCTCCTTTGATCCATCAGTGTTTGATGGTCTAG  1243
            .||||||||||||||.||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||||.|||
Sbjct 2070  CGAGGCAGCTTTTGGAACGACGCCTTCGACTTCAAGCAGCAGCTCTTTTGACCCATCAGTGTTTGATGGTTTAG  2143

Query 1244  GTGATCTTTTGATGCCAACCATGGCACCAGCTGGGCAGCCTGCACCTGTCTCAATGGTACCACCCAGTCCTGCA  1317
            |.||||||.||||||||||||||||||||.|.|||||||||||.||||||||||||||.|||||||||||||||
Sbjct 2144  GCGATCTTCTGATGCCAACCATGGCACCATCCGGGCAGCCTGCCCCTGTCTCAATGGTCCCACCCAGTCCTGCA  2217

Query 1318  ATGGCAGCCAGCAAAGCCCTTGGAAGTGATCTTGATTCATCTCTTGCCAGCTTAGTAGGCAATCTTGGAATTTC  1391
            ||||||||||||||||.|||.||||||||.|||||.||.|||||.|||||.|||||||||||||||||.|||||
Sbjct 2218  ATGGCAGCCAGCAAAGGCCTCGGAAGTGACCTTGACTCGTCTCTGGCCAGTTTAGTAGGCAATCTTGGGATTTC  2291

Query 1392  TGGTACCACAACAAAAAAGGGAGATCTTCAGTGGAATGCTGGAGAGAAAAAGTTGACTGGTGGAGCCAACTGGC  1465
            ||||||||||.||||||||||||||||.||||||||||||||.|||||||||.|||||||||||||||||||||
Sbjct 2292  TGGTACCACATCAAAAAAGGGAGATCTCCAGTGGAATGCTGGGGAGAAAAAGCTGACTGGTGGAGCCAACTGGC  2365

Query 1466  AGCCTAAAGTAGCTCCAGCAACCTGGTCAGCAGGCGTTCCACCAAGTGCACCTTTGCAAGGAGCTGTACCTCCA  1539
            |.||.|||||..|||||||.||.||||||||.||.|||||.||            ||||||..||||.||.|||
Sbjct 2366  AACCGAAAGTCACTCCAGCCACATGGTCAGCGGGTGTTCCCCC------------GCAAGGCACTGTTCCACCA  2427

Query 1540  ACCAGTTCAGTTCCTCCTGTTGCCGGGGCCCCATCGGTTGGACAACCTGGAGCAGGATTTGGAATGCCTCCTGC  1613
            |||||.|||||.|||||.|.||||||||||||.||.|||||.||||||||||||||||||||||||||||||.|
Sbjct 2428  ACCAGCTCAGTCCCTCCGGGTGCCGGGGCCCCGTCCGTTGGGCAACCTGGAGCAGGATTTGGAATGCCTCCTTC  2501

Query 1614  TGGGACAGGCATGCCCATGATGCCTCAGCAGCCGGTCATGTTTGCACAGCCCATGATGAGGCCCCCCTTTGGAG  1687
            .||||||||||||.||||||||.||||||||||.|||||||||||||||||||||||||||||.||||||||||
Sbjct 2502  AGGGACAGGCATGACCATGATGTCTCAGCAGCCAGTCATGTTTGCACAGCCCATGATGAGGCCACCCTTTGGAG  2575

Query 1688  CTGCCGCTGTACCTGGCACGCAGCTTTCTCCAAGCCCTACACCTGCCAGTCAGAGTCCCAAGAAACCTCCAGCA  1761
            ||||.|||||.||.|||||.||||||||||||||||||||||||||||.||||||||||||||||||||||||.
Sbjct 2576  CTGCAGCTGTGCCCGGCACACAGCTTTCTCCAAGCCCTACACCTGCCACTCAGAGTCCCAAGAAACCTCCAGCC  2649

Query 1762  AAGGACCCATTAGCGGATCTTAAC---------------  1785
            ||||||||.|||||||||||||||               
Sbjct 2650  AAGGACCCGTTAGCGGATCTTAACATCAAGGATTTCTTG  2688